Back to Long Tests report for BioC 3.21

This page was generated on 2025-08-09 23:55 -0400 (Sat, 09 Aug 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.2 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4823
palomino7Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4565
merida1macOS 12.7.5 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4603
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 6/30HostnameOS / ArchCHECK
biodbChebi 1.14.0  (landing page)
Pierrick Roger
Snapshot Date: 2025-08-09 09:55 -0400 (Sat, 09 Aug 2025)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: RELEASE_3_21
git_last_commit: b8d718f
git_last_commit_date: 2025-04-15 12:39:10 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.2 LTS) / x86_64  OK  
palomino7Windows Server 2022 Datacenter / x64  OK  
merida1macOS 12.7.5 Monterey / x86_64  OK  

CHECK results for biodbChebi on palomino7

To the developers/maintainers of the biodbChebi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbChebi
Version: 1.14.0
Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.14.0.tar.gz
StartedAt: 2025-08-09 16:02:45 -0400 (Sat, 09 Aug 2025)
EndedAt: 2025-08-09 16:06:35 -0400 (Sat, 09 Aug 2025)
EllapsedTime: 229.7 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbChebi.Rcheck
Warnings: 0

Tests output

biodbChebi.Rcheck/tests/testthat.Rout


R version 4.5.1 (2025-06-13 ucrt) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-08-09 16:03:28.725][biodb::testContext]
biodb.INFO [2025-08-09 16:03:28.728][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-09 16:03:28.730][biodb::testContext] Test context - Generic long tests
biodb.INFO [2025-08-09 16:03:28.731][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-09 16:03:28.733][biodb::testContext]
biodb.INFO [2025-08-09 16:03:28.740][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-08-09 16:03:28.743][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-08-09 16:03:28.792][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-09 16:03:28.794][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-08-09 16:03:28.795][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-08-09 16:03:28.796][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:28.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:28.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:28.800][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-08-09 16:03:28.816][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-08-09 16:03:28.817][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:28.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:28.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:28.821][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-08-09 16:03:28.823][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-08-09 16:03:28.824][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:28.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:28.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:28.827][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-08-09 16:03:28.828][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-08-09 16:03:28.830][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-08-09 16:03:28.831][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:28.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:28.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:28.834][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-08-09 16:03:28.835][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-08-09 16:03:28.837][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-08-09 16:03:28.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:28.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:28.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:28.841][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-08-09 16:03:28.842][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-08-09 16:03:28.844][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:28.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:28.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:28.847][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-08-09 16:03:28.848][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-08-09 16:03:28.849][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-08-09 16:03:28.851][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:28.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:28.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:28.854][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-08-09 16:03:28.855][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-08-09 16:03:28.856][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:28.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:28.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:28.860][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-08-09 16:03:28.861][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-08-09 16:03:28.862][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-08-09 16:03:28.863][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:28.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:28.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:28.867][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-08-09 16:03:28.868][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-08-09 16:03:28.869][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-08-09 16:03:28.870][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-08-09 16:03:28.872][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-08-09 16:03:28.873][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-08-09 16:03:28.874][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:28.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:28.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:28.877][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-08-09 16:03:28.879][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-08-09 16:03:28.880][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:28.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:28.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:28.883][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-08-09 16:03:28.884][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-08-09 16:03:28.885][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:28.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:28.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:28.889][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-08-09 16:03:28.890][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-08-09 16:03:28.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:28.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:28.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:28.894][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-08-09 16:03:28.896][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-08-09 16:03:28.897][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:28.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:28.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:28.900][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-08-09 16:03:28.901][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-08-09 16:03:28.902][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:28.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:28.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:28.906][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-08-09 16:03:28.907][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-08-09 16:03:28.910][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-08-09 16:03:28.911][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:28.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:28.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:28.915][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-08-09 16:03:28.916][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-08-09 16:03:28.917][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-08-09 16:03:28.918][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:28.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:28.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:28.924][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-08-09 16:03:28.951][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-09 16:03:28.971][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-08-09 16:03:28.972][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-09 16:03:28.974][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-09 16:03:28.975][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-09 16:03:28.976][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-09 16:03:28.977][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-09 16:03:28.978][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-09 16:03:28.980][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-09 16:03:28.981][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-09 16:03:28.982][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-09 16:03:28.983][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-08-09 16:03:28.985][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-09 16:03:28.986][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-09 16:03:28.987][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-09 16:03:28.988][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-09 16:03:28.988][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-09 16:03:28.988][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-09 16:03:28.988][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-09 16:03:28.988][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-09 16:03:28.990][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-09 16:03:28.991][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-09 16:03:28.992][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-09 16:03:28.993][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-09 16:03:28.994][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-09 16:03:28.995][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-09 16:03:28.997][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-09 16:03:28.998][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-09 16:03:28.999][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-09 16:03:29.000][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-09 16:03:29.001][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-09 16:03:29.002][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-09 16:03:29.004][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-08-09 16:03:29.006][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-09 16:03:29.007][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-08-09 16:03:29.008][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-09 16:03:29.010][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-09 16:03:29.011][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-09 16:03:29.012][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-09 16:03:29.013][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-09 16:03:29.015][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-09 16:03:29.016][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-09 16:03:29.017][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-09 16:03:29.018][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-09 16:03:29.020][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-08-09 16:03:29.021][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-09 16:03:29.022][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-09 16:03:29.023][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-09 16:03:29.024][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-09 16:03:29.024][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-09 16:03:29.024][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-09 16:03:29.024][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-09 16:03:29.024][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-09 16:03:29.026][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-09 16:03:29.027][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-09 16:03:29.028][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-09 16:03:29.029][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-09 16:03:29.030][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-09 16:03:29.032][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-09 16:03:29.033][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-09 16:03:29.034][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-09 16:03:29.035][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-09 16:03:29.036][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-09 16:03:29.037][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-09 16:03:29.039][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-09 16:03:29.040][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-08-09 16:03:29.042][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-09 16:03:29.043][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-08-09 16:03:29.044][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-09 16:03:29.046][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-09 16:03:29.047][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-09 16:03:29.048][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-09 16:03:29.049][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-09 16:03:29.051][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-09 16:03:29.052][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-09 16:03:29.053][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-09 16:03:29.054][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-09 16:03:29.055][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-08-09 16:03:29.057][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-09 16:03:29.058][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-09 16:03:29.059][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-09 16:03:29.060][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-09 16:03:29.062][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-09 16:03:29.063][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-09 16:03:29.064][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-09 16:03:29.065][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-09 16:03:29.066][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-09 16:03:29.067][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-09 16:03:29.068][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-09 16:03:29.070][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-09 16:03:29.071][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-09 16:03:29.072][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-09 16:03:29.073][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-09 16:03:29.075][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-09 16:03:29.078][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-08-09 16:03:29.080][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-09 16:03:29.081][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-08-09 16:03:29.082][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-09 16:03:29.083][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-09 16:03:29.085][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-09 16:03:29.086][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-09 16:03:29.087][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-09 16:03:29.088][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-09 16:03:29.090][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-09 16:03:29.091][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-09 16:03:29.092][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-09 16:03:29.093][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-08-09 16:03:29.094][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-09 16:03:29.096][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-09 16:03:29.097][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-09 16:03:29.098][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-09 16:03:29.099][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-09 16:03:29.100][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-09 16:03:29.102][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-09 16:03:29.103][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-09 16:03:29.104][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-09 16:03:29.105][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-09 16:03:29.106][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-09 16:03:29.108][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-09 16:03:29.109][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-09 16:03:29.110][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-09 16:03:29.111][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-09 16:03:29.112][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-09 16:03:29.116][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-09 16:03:29.117][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.119][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.125][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.128][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.130][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.136][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.141][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.147][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.152][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.158][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.163][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.169][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.175][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.181][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.191][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.196][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.202][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.207][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.213][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.219][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-08-09 16:03:29.223][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-08-09 16:03:29.225][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-08-09 16:03:29.226][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-08-09 16:03:29.228][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-09 16:03:29.229][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-08-09 16:03:29.231][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-08-09 16:03:29.233][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-08-09 16:03:29.234][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-08-09 16:03:29.236][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-08-09 16:03:29.237][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-09 16:03:29.239][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-08-09 16:03:29.240][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-08-09 16:03:29.242][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-08-09 16:03:29.244][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-08-09 16:03:29.245][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-08-09 16:03:29.247][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-08-09 16:03:29.248][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-08-09 16:03:29.250][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-09 16:03:29.251][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-08-09 16:03:29.253][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-08-09 16:03:29.255][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-08-09 16:03:29.256][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-08-09 16:03:29.258][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-08-09 16:03:29.259][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-08-09 16:03:29.261][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-08-09 16:03:29.262][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-08-09 16:03:29.264][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-08-09 16:03:29.266][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-08-09 16:03:29.267][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-08-09 16:03:29.269][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-08-09 16:03:29.270][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-08-09 16:03:29.272][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-08-09 16:03:29.274][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-08-09 16:03:29.275][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-08-09 16:03:29.277][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-08-09 16:03:29.278][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-08-09 16:03:29.280][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-08-09 16:03:29.281][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-08-09 16:03:29.283][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-08-09 16:03:29.285][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-08-09 16:03:29.286][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-08-09 16:03:29.288][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-08-09 16:03:29.289][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-08-09 16:03:29.291][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-08-09 16:03:29.293][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-08-09 16:03:29.294][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-08-09 16:03:29.296][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-08-09 16:03:29.297][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-08-09 16:03:29.299][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-08-09 16:03:29.300][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-08-09 16:03:29.302][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-08-09 16:03:29.303][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-08-09 16:03:29.305][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-08-09 16:03:29.307][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-08-09 16:03:29.308][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-08-09 16:03:29.310][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-08-09 16:03:29.311][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-08-09 16:03:29.313][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-08-09 16:03:29.314][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-08-09 16:03:29.316][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-08-09 16:03:29.318][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-08-09 16:03:29.319][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-08-09 16:03:29.321][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-08-09 16:03:29.322][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-08-09 16:03:29.324][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-08-09 16:03:29.326][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-09 16:03:29.327][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-09 16:03:29.329][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-08-09 16:03:29.330][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-08-09 16:03:29.332][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-08-09 16:03:29.333][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-08-09 16:03:29.335][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-08-09 16:03:29.337][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-08-09 16:03:29.338][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-08-09 16:03:29.340][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-08-09 16:03:29.341][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-08-09 16:03:29.343][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-08-09 16:03:29.344][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-08-09 16:03:29.346][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-08-09 16:03:29.347][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-08-09 16:03:29.349][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-08-09 16:03:29.351][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-08-09 16:03:29.374][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-08-09 16:03:29.377][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-08-09 16:03:29.380][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-09 16:03:29.381][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.383][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.389][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:29.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:29.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.402][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:29.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:29.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.410][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:29.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:29.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.417][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:29.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:29.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.425][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:29.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:29.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.432][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:29.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:29.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.440][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:29.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:29.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.447][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:29.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:29.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:29.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:29.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.462][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:29.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:29.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:29.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:29.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.477][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:29.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:29.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.485][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:29.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:29.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.492][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:29.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:29.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.500][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:29.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:29.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.507][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:29.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:29.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.515][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:03:29.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:29.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:29.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:29.525][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2025-08-09 16:03:29.533][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-08-09 16:03:29.536][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-09 16:03:29.537][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-08-09 16:03:29.538][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-09 16:03:29.539][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-09 16:03:29.541][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-09 16:03:29.542][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-09 16:03:29.543][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-08-09 16:03:29.544][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-08-09 16:03:29.545][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-08-09 16:03:29.547][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-09 16:03:29.548][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-09 16:03:29.549][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-08-09 16:03:29.550][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-09 16:03:29.551][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-08-09 16:03:29.551][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-08-09 16:03:29.551][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-08-09 16:03:29.551][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-08-09 16:03:29.551][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-08-09 16:03:29.551][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-08-09 16:03:29.551][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-08-09 16:03:29.551][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-08-09 16:03:29.551][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-08-09 16:03:29.551][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-08-09 16:03:29.551][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-08-09 16:03:29.553][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-08-09 16:03:29.554][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-09 16:03:29.554][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-09 16:03:29.554][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-09 16:03:29.555][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-08-09 16:03:29.556][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-09 16:03:29.557][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-09 16:03:29.559][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-09 16:03:29.560][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-09 16:03:29.561][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-09 16:03:29.562][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-09 16:03:29.563][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:03:29.563][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-08-09 16:03:29.564][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-09 16:03:29.565][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-09 16:03:29.567][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-08-09 16:03:29.568][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-08-09 16:03:29.568][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-08-09 16:03:29.573][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-09 16:03:29.575][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-09 16:03:29.577][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-08-09 16:03:29.579][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-09 16:03:29.580][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-09 16:03:29.582][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-09 16:03:29.630][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-08-09 16:03:29.632][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-08-09 16:03:29.636][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-08-09 16:03:29.639][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-08-09 16:03:29.643][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-09 16:03:29.644][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-09 16:03:29.646][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-08-09 16:03:29.647][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-08-09 16:03:29.657][biodb::testThat]
biodb.INFO [2025-08-09 16:03:29.659][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-08-09 16:03:29.660][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-09 16:03:29.661][biodb::testThat]
biodb.TRACE[2025-08-09 16:03:29.666][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-08-09 16:03:29.668][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:03:29.671][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:03:29.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:29.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:29.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:29.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:29.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:29.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:29.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:29.760][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:29.761][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:29.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.764][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:29.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:29.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.781][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:29.782][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:29.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.784][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.807][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:29.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:29.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.812][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:29.813][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:29.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.816][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.817][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:29.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:29.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.822][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:29.823][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:29.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.826][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:29.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:29.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.832][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:29.834][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:29.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.836][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:29.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:29.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.842][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:29.844][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:29.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.846][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.847][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:29.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:29.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.862][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:29.864][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:29.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.866][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.868][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:29.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:29.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.872][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:29.874][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:29.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.876][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:29.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:29.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.883][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:29.884][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:29.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.886][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.888][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:29.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:29.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.893][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:29.894][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:29.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.896][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.898][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:29.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:29.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.903][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:29.904][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:29.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.906][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.908][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:29.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:29.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:29.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:29.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:29.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:29.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:29.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:29.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:29.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:29.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:29.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:29.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:29.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:29.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:29.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:29.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:29.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:29.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:29.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:29.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:29.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:29.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:29.988][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-08-09 16:03:29.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:29.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:29.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:29.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:29.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:29.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:29.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:30.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:30.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:30.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:30.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:30.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:30.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:30.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:30.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.046][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-09 16:03:30.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-09 16:03:30.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.051][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-09 16:03:30.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-09 16:03:30.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.056][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-09 16:03:30.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-09 16:03:30.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.061][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-09 16:03:30.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-09 16:03:30.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:30.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:30.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:30.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:30.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:30.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:30.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:30.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:30.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:30.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:30.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:30.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:30.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:30.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:30.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:30.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:30.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:30.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:30.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:30.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:30.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:30.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:30.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:30.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:30.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:30.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:30.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:30.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:30.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.192][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:30.193][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:30.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.196][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:30.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:30.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:30.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:30.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:30.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:30.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:30.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:30.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.227][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:30.228][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:30.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.231][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:30.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:30.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:30.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:30.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.252][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:30.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:30.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.257][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:30.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:30.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.261][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:30.263][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:30.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.265][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.266][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:30.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:30.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.281][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:30.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:30.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.286][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:30.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:30.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.291][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:30.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:30.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.296][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:30.297][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:30.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.299][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.301][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:30.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:30.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:30.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:30.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:30.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:30.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:30.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:30.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.331][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:30.332][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:30.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.334][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:30.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:30.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:30.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:30.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:30.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:30.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:30.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:30.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.370][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:30.372][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:30.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.374][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:30.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:30.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.390][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:30.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:30.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.395][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:30.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:30.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.400][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:30.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:30.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.405][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:30.406][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:30.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.408][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.410][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:30.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:30.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.424][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:03:30.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:30.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.429][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:03:30.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:30.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.434][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:03:30.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:30.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.439][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:03:30.440][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:30.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.442][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.444][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:03:30.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:30.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.458][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:30.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:30.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.463][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:30.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:30.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.468][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:30.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:30.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.473][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:30.474][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:30.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.476][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.478][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:30.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:30.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.492][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:30.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:30.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.497][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:30.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:30.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.502][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:30.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:30.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.512][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:30.513][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:30.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.515][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.517][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:30.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:30.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:30.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:30.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:30.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:30.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:30.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:30.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.546][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:30.547][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:30.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.549][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:30.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:30.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.565][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:30.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:30.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:30.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:30.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:30.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:30.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.580][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:30.581][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:30.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.583][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:30.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:30.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.599][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:30.601][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:30.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.603][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.609][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:30.611][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:30.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.613][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.620][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:30.621][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:30.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.623][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.630][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:30.631][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:30.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.633][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.640][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:30.641][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:30.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.644][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.650][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:30.652][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:30.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.654][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.661][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:30.662][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:30.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.664][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.671][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:30.672][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:30.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.675][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.681][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:03:30.683][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:30.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.685][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.697][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:30.698][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:30.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.700][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.707][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:30.708][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:30.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.711][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.729][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2025-08-09 16:03:30.760][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:03:30.761][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:03:30.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:30.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:30.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:30.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:30.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:30.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:30.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:30.778][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:30.780][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:30.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.782][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:30.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:30.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.802][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:30.803][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:30.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.806][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.807][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:30.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:30.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.812][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:30.818][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:30.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.821][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.823][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:30.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:30.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.828][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:30.829][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:30.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.831][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:30.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:30.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.838][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:30.839][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:30.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.842][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:30.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:30.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.848][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:30.849][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:30.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.852][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.853][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:30.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:30.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.858][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:30.860][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:30.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.862][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.863][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:30.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:30.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.868][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:30.870][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:30.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.872][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:30.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:30.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.879][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:30.880][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:30.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.882][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.884][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:30.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:30.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.889][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:30.890][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:30.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.892][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.894][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:30.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:30.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.899][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:30.900][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:30.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.902][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.904][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:30.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:30.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:30.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:30.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:30.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:30.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:30.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:30.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:30.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:30.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:30.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:30.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:30.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:30.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:30.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:30.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:30.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:30.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:30.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:30.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:30.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:30.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:30.957][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2025-08-09 16:03:30.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:30.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:30.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.984][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:30.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:30.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:30.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:30.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:30.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:30.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:30.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:30.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:31.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:31.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:31.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:31.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.008][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-09 16:03:31.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-09 16:03:31.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.013][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-09 16:03:31.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-09 16:03:31.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.018][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-09 16:03:31.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-09 16:03:31.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.023][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-09 16:03:31.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-09 16:03:31.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:31.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:31.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:31.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:31.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:31.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:31.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:31.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:31.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:31.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:31.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:31.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:31.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:31.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:31.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:31.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:31.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:31.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:31.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:31.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:31.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.134][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:31.135][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:31.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.137][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:31.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:31.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.168][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.169][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.171][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.187][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:31.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:31.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.192][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:31.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:31.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.197][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:31.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:31.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.202][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:31.203][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:31.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.205][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.206][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:31.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:31.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.221][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:31.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:31.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.226][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:31.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:31.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.231][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:31.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:31.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.235][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:31.237][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:31.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.239][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.240][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:31.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:31.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.255][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:31.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:31.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:31.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:31.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:31.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:31.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.269][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:31.270][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:31.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.273][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.274][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:31.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:31.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:31.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:31.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:31.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:31.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:31.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:31.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.307][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:31.309][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:31.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.311][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:31.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:31.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:31.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:31.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:31.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:31.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:31.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:31.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.342][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:31.343][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:31.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.345][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:31.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:31.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.361][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:31.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:31.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.366][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:31.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:31.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.371][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:31.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:31.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.378][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:31.379][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:31.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.381][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.383][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:31.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:31.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.398][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:03:31.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:31.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.403][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:03:31.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:31.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.407][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:03:31.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:31.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.412][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:03:31.414][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:31.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.416][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.417][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:03:31.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:31.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.432][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:31.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:31.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.437][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:31.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:31.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.442][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:31.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:31.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.447][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:31.448][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:31.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.450][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.452][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:31.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:31.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.466][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:31.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:31.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.476][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:31.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:31.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.481][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:31.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:31.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.486][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:31.487][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:31.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.490][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.491][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:31.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:31.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:31.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:31.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:31.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:31.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.516][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:31.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:31.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.521][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:31.522][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:31.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.524][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:31.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:31.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.540][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:31.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:31.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.545][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:31.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:31.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.550][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:31.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:31.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.555][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:31.556][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:31.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.559][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:31.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:31.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.575][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:31.576][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:31.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.578][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.585][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:31.586][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:31.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.589][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.595][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:31.597][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:31.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.599][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.606][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:31.607][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:31.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.609][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.616][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:31.617][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:31.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.620][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.626][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:31.628][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:31.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.630][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.637][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:31.638][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:31.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.640][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.652][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:31.654][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:31.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.656][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.663][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:03:31.664][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:31.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.666][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.673][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:31.675][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:31.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.677][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.684][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:31.685][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:31.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.687][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.695][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2025-08-09 16:03:31.697][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:03:31.698][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:03:31.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:31.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:31.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:31.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:31.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:31.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:31.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:31.715][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:31.716][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:31.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.719][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:31.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:31.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.725][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:31.726][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:31.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.728][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.730][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:31.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:31.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.735][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:31.736][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:31.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.738][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.740][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:31.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:31.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.744][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:31.746][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:31.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.748][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:31.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:31.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.754][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:31.755][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:31.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.758][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.759][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:31.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:31.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.764][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:31.765][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:31.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.768][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.769][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:31.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:31.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.774][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:31.775][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:31.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.778][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.779][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:31.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:31.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.784][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:31.785][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:31.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.787][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:31.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:31.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.794][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:31.795][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:31.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.797][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:31.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:31.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.804][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:31.805][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:31.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.807][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.809][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:31.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:31.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.814][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:31.815][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:31.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.817][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.824][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:31.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:31.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:31.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:31.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:31.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:31.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:31.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:31.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:31.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:31.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:31.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:31.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:31.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:31.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:31.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:31.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:31.877][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2025-08-09 16:03:31.880][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:31.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:31.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:31.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:31.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:31.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:31.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:31.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:31.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:31.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:31.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:31.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:31.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.908][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-09 16:03:31.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-09 16:03:31.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.913][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-09 16:03:31.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-09 16:03:31.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.918][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-09 16:03:31.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-09 16:03:31.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.922][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-09 16:03:31.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-09 16:03:31.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:31.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:31.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:31.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:31.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:31.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:31.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:31.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:31.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:31.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:31.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:31.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:31.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:31.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:31.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:31.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:31.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:31.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:32.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:32.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:32.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:32.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:32.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:32.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.021][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:32.023][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:32.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.025][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:32.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:32.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.040][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:32.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:32.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:32.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:32.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.050][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:32.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:32.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.055][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:32.056][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:32.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.058][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.060][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:32.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:32.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:32.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:32.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:32.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:32.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:32.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:32.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.094][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:32.095][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:32.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.099][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.101][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:32.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:32.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:32.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:32.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:32.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:32.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:32.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:32.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.137][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:32.138][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:32.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.141][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:32.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:32.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.156][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:32.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:32.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.161][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:32.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:32.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.171][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:32.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:32.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.177][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:32.178][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:32.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.180][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.182][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:32.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:32.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:32.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:32.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:32.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:32.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:32.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:32.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.212][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:32.213][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:32.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.216][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:32.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:32.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:32.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:32.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:32.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:32.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:32.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:32.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.247][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:32.248][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:32.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.250][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:32.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:32.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.266][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:32.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:32.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.271][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:32.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:32.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.276][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:32.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:32.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.281][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:32.282][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:32.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.284][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.286][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:32.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:32.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.300][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:03:32.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:32.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.306][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:03:32.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:32.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.310][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:03:32.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:32.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.315][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:03:32.317][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:32.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.319][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.320][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:03:32.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:32.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.335][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:32.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:32.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.345][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:32.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:32.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.350][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:32.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:32.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.355][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:32.356][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:32.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.358][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.360][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:32.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:32.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.375][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:32.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:32.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.380][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:32.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:32.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.385][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:32.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:32.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.390][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:32.391][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:32.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.393][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.395][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:32.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:32.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.409][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:32.411][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:32.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.413][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.420][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:32.421][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:32.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.423][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.430][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:32.431][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:32.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.434][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.440][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:32.442][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:32.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.444][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.451][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:32.452][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:32.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.455][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.461][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:32.463][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:32.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.465][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.472][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:32.473][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:32.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.476][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.483][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:32.484][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:32.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.486][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.493][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:03:32.495][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:32.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.497][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.504][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:32.505][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:32.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.508][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:32.515][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:32.516][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:32.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:32.518][ef$get] fields variable is a list.
biodb.INFO [2025-08-09 16:03:32.540][biodb::testThat]
biodb.INFO [2025-08-09 16:03:32.542][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-08-09 16:03:32.544][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-09 16:03:32.546][biodb::testThat]
biodb.DEBUG[2025-08-09 16:03:32.551][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2025-08-09 16:03:32.561][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2025-08-09 16:03:32.587][cch$loadFileContent] Trying to load 3 files from cache: [3]: "15440, 2528, 7799".
biodb.INFO [2025-08-09 16:03:32.590][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649" for "chebi-0c5076ac2a43d16dbce503a44b09f649".
biodb.TRACE[2025-08-09 16:03:32.592][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-08-09 16:03:32.594][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:03:32.595][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:03:32.596][conn$getEntryContent] 3 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:03:32.597][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:03:32.599][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:03:32.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:32.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:32.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:32.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:32.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:32.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:32.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:32.619][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.DEBUG[2025-08-09 16:03:32.637][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:03:32.638][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:03:32.639][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.TRACE[2025-08-09 16:03:33.379][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
biodb.DEBUG[2025-08-09 16:03:33.753][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:03:33.756][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.content"
biodb.TRACE[2025-08-09 16:03:33.772][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.request"
biodb.DEBUG[2025-08-09 16:03:33.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:33.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:33.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:33.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:33.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:33.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:33.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:33.814][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
biodb.DEBUG[2025-08-09 16:03:33.828][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:03:33.829][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:03:33.842][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
biodb.TRACE[2025-08-09 16:03:34.130][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
biodb.DEBUG[2025-08-09 16:03:34.417][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:03:34.420][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65267cab26ad2d71ed08b12751f9bef2.content"
biodb.TRACE[2025-08-09 16:03:34.425][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65267cab26ad2d71ed08b12751f9bef2.request"
biodb.DEBUG[2025-08-09 16:03:34.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:34.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:34.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:34.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:34.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:34.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:34.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:34.441][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
biodb.DEBUG[2025-08-09 16:03:34.444][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:03:34.446][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:03:34.447][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
biodb.TRACE[2025-08-09 16:03:34.746][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
biodb.DEBUG[2025-08-09 16:03:35.028][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:03:35.031][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/07eb1d5438367a7b1616709944d88b07.content"
biodb.TRACE[2025-08-09 16:03:35.036][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/07eb1d5438367a7b1616709944d88b07.request"
biodb.TRACE[2025-08-09 16:03:35.039][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml"
biodb.DEBUG[2025-08-09 16:03:35.042][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:03:35.044][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-08-09 16:03:35.045][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-08-09 16:03:35.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:35.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:35.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:35.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:35.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:35.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:35.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:35.074][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:35.077][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:35.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.080][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:35.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:35.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.090][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:35.091][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:35.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.095][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.097][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:35.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:35.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.105][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:35.107][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:35.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.111][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.114][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:35.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:35.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.119][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:35.121][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:35.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.123][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:35.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:35.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.130][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:35.131][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:35.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.133][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.135][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:35.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:35.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.140][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:35.141][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:35.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.144][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.145][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:35.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:35.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.150][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:35.152][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:35.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.154][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.155][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:35.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:35.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.160][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:35.162][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:35.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.164][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:35.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:35.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.171][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:35.172][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:35.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.174][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.176][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:35.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:35.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.181][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:35.182][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:35.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.185][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.186][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:35.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:35.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.191][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:35.193][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:35.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.195][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.196][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:35.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:35.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:35.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:35.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:35.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:35.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:35.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:35.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:35.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:35.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:35.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:35.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:35.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:35.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:35.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:35.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:35.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:35.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:35.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:35.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:35.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:35.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:35.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:35.282][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:35.283][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:35.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.285][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:35.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:35.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.292][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:35.293][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:35.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.296][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.297][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:35.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:35.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.302][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:35.303][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:35.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.306][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.307][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:35.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:35.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.312][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:35.314][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:35.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.316][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:35.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:35.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.322][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:35.324][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:35.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.326][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:35.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:35.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.332][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:35.334][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:35.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.336][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.338][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:35.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:35.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.342][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:35.344][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:35.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.346][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.347][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:35.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:35.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.358][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:35.359][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:35.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.361][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:35.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:35.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.368][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:35.369][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:35.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.372][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.373][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:35.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:35.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.378][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:35.380][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:35.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.382][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.383][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:35.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:35.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.388][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:35.390][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:35.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.392][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.393][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:35.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:35.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:35.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:35.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:35.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:35.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:35.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:35.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:35.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:35.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:35.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:35.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:35.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:35.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:35.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:35.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:35.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:35.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:35.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:35.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:35.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:35.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:35.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:35.448][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:35.449][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:35.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.452][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:35.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:35.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.458][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:35.460][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:35.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.464][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.466][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:35.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:35.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.472][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:35.473][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:35.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.475][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.477][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:35.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:35.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.487][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:35.489][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:35.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.491][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:35.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:35.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.498][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:35.499][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:35.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.501][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.503][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:35.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:35.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.508][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:35.509][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:35.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.511][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.513][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:35.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:35.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.518][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:35.519][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:35.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.521][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.523][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:35.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:35.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.528][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:35.529][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:35.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.531][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:35.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:35.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.538][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:35.539][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:35.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.541][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.543][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:35.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:35.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.548][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:35.549][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:35.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.552][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.553][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:35.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:35.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.558][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:35.559][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:35.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.562][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.563][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:35.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:35.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:35.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:35.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:35.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:35.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:35.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:35.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:35.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:35.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:35.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:35.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:35.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:35.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:35.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:35.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:35.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:35.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:35.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:35.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:35.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:35.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:35.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:35.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:35.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:35.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:35.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:35.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:35.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:35.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:35.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:35.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:35.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:35.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:35.652][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2025-08-09 16:03:35.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-08-09 16:03:35.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-08-09 16:03:35.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-08-09 16:03:35.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-08-09 16:03:35.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-08-09 16:03:35.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-08-09 16:03:35.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-08-09 16:03:35.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-08-09 16:03:35.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-08-09 16:03:35.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-08-09 16:03:35.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-08-09 16:03:35.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-08-09 16:03:35.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-08-09 16:03:35.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-08-09 16:03:35.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-08-09 16:03:35.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-08-09 16:03:35.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-08-09 16:03:35.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-08-09 16:03:35.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-09 16:03:35.721][biodb::testThat]
biodb.INFO [2025-08-09 16:03:35.722][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-08-09 16:03:35.723][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-09 16:03:35.724][biodb::testThat]
biodb.TRACE[2025-08-09 16:03:35.728][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:35.729][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:35.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.732][ef$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:35.734][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-08-09 16:03:35.769][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:35.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:35.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.775][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:35.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:35.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:35.779][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:35.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:35.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:35.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:35.787][function(conn, opt)] With value "squalene".
biodb.DEBUG[2025-08-09 16:03:35.790][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-08-09 16:03:35.793][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:03:35.794][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:03:35.796][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.TRACE[2025-08-09 16:03:36.070][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl).
biodb.DEBUG[2025-08-09 16:03:36.433][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:03:36.436][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content"
biodb.TRACE[2025-08-09 16:03:36.440][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.request"
biodb.DEBUG[2025-08-09 16:03:36.445][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:03:36.448][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:03:36.450][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:03:36.452][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-08-09 16:03:36.819][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-08-09 16:03:37.176][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:03:37.179][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content"
biodb.TRACE[2025-08-09 16:03:37.184][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.request"
biodb.DEBUG[2025-08-09 16:03:37.188][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-08-09 16:03:37.206][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:37.207][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:37.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:37.210][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:37.211][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:37.212][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:37.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:37.215][ef$get] fields variable is a list.
biodb.INFO [2025-08-09 16:03:37.221][biodb::testThat]
biodb.INFO [2025-08-09 16:03:37.231][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-08-09 16:03:37.233][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-09 16:03:37.234][biodb::testThat]
biodb.TRACE[2025-08-09 16:03:37.262][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:37.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:37.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:37.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:37.267][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:37.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:37.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:37.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:37.272][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:37.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:37.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:37.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:37.331][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:03:37.335][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:03:37.349][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-08-09 16:03:37.351][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:03:37.356][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2025-08-09 16:03:37.380][biodb::testThat]
biodb.INFO [2025-08-09 16:03:37.381][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-08-09 16:03:37.383][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-09 16:03:37.384][biodb::testThat]
biodb.TRACE[2025-08-09 16:03:37.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:37.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:37.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:37.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:37.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:37.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:37.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:37.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:37.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:37.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:37.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:37.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:37.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:37.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:37.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:37.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:37.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:37.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:37.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:37.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:37.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:37.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:37.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:37.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:37.426][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-09 16:03:37.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-09 16:03:37.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:37.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:37.431][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-09 16:03:37.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-09 16:03:37.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:37.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:37.436][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-09 16:03:37.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-09 16:03:37.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:37.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:37.447][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-09 16:03:37.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-09 16:03:37.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:37.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:37.460][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:37.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:37.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:37.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:37.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:37.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:37.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:37.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:37.470][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:37.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:37.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:37.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:37.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:37.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:37.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:37.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:37.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:37.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:37.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:37.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:37.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:37.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:37.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:37.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:37.490][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-09 16:03:37.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-09 16:03:37.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:37.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:37.495][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-09 16:03:37.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-09 16:03:37.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:37.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:37.499][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-09 16:03:37.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-09 16:03:37.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:37.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:37.504][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-09 16:03:37.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-09 16:03:37.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:37.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-09 16:03:37.518][biodb::testThat]
biodb.INFO [2025-08-09 16:03:37.519][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-08-09 16:03:37.520][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-09 16:03:37.521][biodb::testThat]
biodb.INFO [2025-08-09 16:03:37.533][biodb::testThat]
biodb.INFO [2025-08-09 16:03:37.534][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-08-09 16:03:37.536][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-09 16:03:37.537][biodb::testThat]
biodb.INFO [2025-08-09 16:03:37.550][biodb::testThat]
biodb.INFO [2025-08-09 16:03:37.551][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-08-09 16:03:37.552][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-09 16:03:37.553][biodb::testThat]
biodb.DEBUG[2025-08-09 16:03:37.558][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2025-08-09 16:03:37.956][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2025-08-09 16:03:38.634][biodb::testThat]
biodb.INFO [2025-08-09 16:03:38.636][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-08-09 16:03:38.637][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-09 16:03:38.638][biodb::testThat]
biodb.DEBUG[2025-08-09 16:03:38.937][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2025-08-09 16:03:39.241][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:39.243][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:39.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:39.246][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:39.247][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:39.249][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:39.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:39.251][ef$get] fields variable is a list.
biodb.INFO [2025-08-09 16:03:39.254][biodb::testThat]
biodb.INFO [2025-08-09 16:03:39.256][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-08-09 16:03:39.257][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-09 16:03:39.259][biodb::testThat]
biodb.TRACE[2025-08-09 16:03:39.277][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:39.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:39.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:39.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:39.282][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:39.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:39.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:39.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:39.287][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:39.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:39.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:39.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:39.396][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:03:39.400][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:03:39.402][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-08-09 16:03:39.403][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:03:39.406][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-08-09 16:03:39.472][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:03:39.476][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:03:39.477][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-08-09 16:03:39.479][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:03:39.482][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2025-08-09 16:03:39.501][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:03:39.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:03:39.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:39.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:39.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:39.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:39.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:39.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:39.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:39.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:39.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:39.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:39.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:39.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:39.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:39.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:39.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:39.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:39.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:39.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:39.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:39.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:39.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:39.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:39.544][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:03:39.548][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:03:39.549][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:03:39.551][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-08-09 16:03:39.850][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-08-09 16:03:40.147][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:03:40.150][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content"
biodb.TRACE[2025-08-09 16:03:40.154][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.request"
biodb.DEBUG[2025-08-09 16:03:40.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:40.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:40.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:40.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:40.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:40.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:40.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:40.172][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-08-09 16:03:40.211][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:03:40.213][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2025-08-09 16:03:40.215][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:03:40.216][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:03:40.371][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:03:40.372][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:03:40.374][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:03:40.375][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:03:40.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:40.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:40.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:40.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:40.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:40.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:40.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:40.401][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.DEBUG[2025-08-09 16:03:40.404][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:03:40.406][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:03:40.407][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.TRACE[2025-08-09 16:03:40.701][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288).
biodb.DEBUG[2025-08-09 16:03:40.996][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:03:40.999][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.content"
biodb.TRACE[2025-08-09 16:03:41.003][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.request"
biodb.TRACE[2025-08-09 16:03:41.007][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml"
biodb.DEBUG[2025-08-09 16:03:41.009][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:03:41.010][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:03:41.012][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:03:41.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:41.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:41.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:41.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:41.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:41.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:41.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:41.028][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:41.030][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:41.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.032][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:41.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:41.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.038][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:41.040][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:41.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.042][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.043][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:41.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:41.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.048][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:41.050][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:41.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.052][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.054][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:41.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:41.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.059][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:41.060][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:41.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.062][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:41.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:41.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.069][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:41.070][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:41.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.072][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:41.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:41.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.079][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:41.081][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:41.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.085][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.087][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:41.089][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:41.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.093][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.095][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:41.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:41.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.103][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:41.105][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:41.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.109][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:41.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:41.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.117][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:41.118][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:41.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.121][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.123][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:41.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:41.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.128][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:41.130][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:41.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.132][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.134][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:41.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:41.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.140][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:41.141][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:41.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.144][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.145][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:41.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:41.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:41.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:41.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:41.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:41.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:41.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:41.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:41.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:41.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:41.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:41.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:41.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:41.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:41.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:41.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:41.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:41.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:41.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:41.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:41.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:41.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:41.204][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2025-08-09 16:03:41.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:41.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:41.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:41.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:41.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:41.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:41.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:41.231][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:03:41.235][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:03:41.237][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:03:41.239][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-08-09 16:03:41.522][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-08-09 16:03:41.802][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:03:41.805][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content"
biodb.TRACE[2025-08-09 16:03:41.811][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.request"
biodb.DEBUG[2025-08-09 16:03:41.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:41.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:41.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:41.838][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:41.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:41.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:41.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:41.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:41.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:41.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:41.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:41.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:41.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:41.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:41.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:41.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:41.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:41.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:41.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:41.870][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:41.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:41.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:41.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:41.875][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-08-09 16:03:41.876][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:03:41.878][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2025-08-09 16:03:41.880][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:03:41.882][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:03:41.883][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:03:41.885][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:03:41.886][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:03:41.887][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:03:41.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:41.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:41.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:41.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:41.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:41.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:41.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:41.906][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.DEBUG[2025-08-09 16:03:41.909][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:03:41.911][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:03:41.913][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.TRACE[2025-08-09 16:03:42.201][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892).
biodb.DEBUG[2025-08-09 16:03:42.497][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:03:42.501][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.content"
biodb.TRACE[2025-08-09 16:03:42.505][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.request"
biodb.TRACE[2025-08-09 16:03:42.509][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml"
biodb.DEBUG[2025-08-09 16:03:42.512][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:03:42.513][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:03:42.515][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:03:42.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:42.518][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:42.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:42.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:42.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:42.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:42.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:42.534][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:42.535][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:42.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.538][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:42.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:42.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.545][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:42.546][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:42.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.549][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.551][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:42.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:42.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.566][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:42.567][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:42.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.569][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.571][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:42.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:42.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.576][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:42.577][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:42.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.579][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:42.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:42.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.586][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:42.587][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:42.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.589][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:42.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:42.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.595][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:42.597][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:42.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.599][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.600][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:42.602][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:42.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.604][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.605][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:42.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:42.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.610][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:42.611][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:42.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.614][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:42.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:42.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.620][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:42.621][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:42.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.623][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.625][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:42.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:42.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.630][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:42.631][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:42.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.633][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.635][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:42.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:42.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.640][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:42.641][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:42.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.643][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:42.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:42.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:42.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:42.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:42.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:42.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:42.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:42.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:42.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:42.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:42.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:42.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:42.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:42.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:42.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:42.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:42.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:42.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:42.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:42.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:42.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:42.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:42.698][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2025-08-09 16:03:42.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:42.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:42.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:42.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:42.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:42.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:42.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:42.739][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:03:42.743][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:03:42.745][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-08-09 16:03:42.747][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:03:42.749][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-08-09 16:03:42.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:42.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:42.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:42.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:42.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:42.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:42.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:42.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:42.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:42.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:42.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:42.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:42.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:42.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:42.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:42.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:42.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:42.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:42.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:42.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:42.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:42.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:42.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:42.796][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2025-08-09 16:03:42.797][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:03:42.799][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2025-08-09 16:03:42.800][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:03:42.802][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:03:42.803][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:03:42.804][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:03:42.806][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:03:42.807][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:03:42.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:42.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:42.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:42.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:42.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:42.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:42.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:42.823][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.DEBUG[2025-08-09 16:03:42.826][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:03:42.828][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:03:42.829][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.TRACE[2025-08-09 16:03:43.125][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747).
biodb.DEBUG[2025-08-09 16:03:43.414][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:03:43.417][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.content"
biodb.TRACE[2025-08-09 16:03:43.421][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.request"
biodb.TRACE[2025-08-09 16:03:43.424][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml"
biodb.DEBUG[2025-08-09 16:03:43.427][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:03:43.428][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:03:43.429][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:03:43.431][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:43.432][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:43.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:43.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:43.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:43.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:43.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:43.446][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:43.447][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:43.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:43.450][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:43.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:43.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:43.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:43.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:43.456][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:43.457][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:43.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:43.459][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:43.461][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:43.462][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:43.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:43.464][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:43.466][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:43.467][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:43.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:43.469][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:43.471][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:43.472][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:43.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:43.474][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:43.476][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:43.477][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:43.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:43.479][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:43.481][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:43.482][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:43.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:43.484][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:43.486][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:43.487][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:43.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:43.489][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:43.491][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:43.492][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:43.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:43.494][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:43.496][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:43.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:43.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:43.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:43.501][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:43.502][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:43.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:43.505][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:43.506][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:43.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:43.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:43.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:43.511][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:43.512][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:43.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:43.514][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:43.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:43.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:43.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:43.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:43.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:43.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:43.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:43.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:43.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:43.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:43.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:43.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:43.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:43.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:43.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:43.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:43.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:43.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:43.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:43.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:43.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:43.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:43.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:43.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:43.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:43.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:43.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:43.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:43.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:43.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:43.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:43.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:43.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:43.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:43.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:43.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:43.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:43.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:43.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:43.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:43.564][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2025-08-09 16:03:43.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:43.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:43.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:43.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:43.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:43.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:43.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:43.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:43.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:43.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:43.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:43.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:43.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:43.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:43.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:43.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:43.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:43.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:43.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:43.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:43.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:43.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:43.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:43.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:43.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:43.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:43.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:43.610][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2025-08-09 16:03:43.612][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:03:43.613][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2025-08-09 16:03:43.615][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:03:43.616][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:03:43.618][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:03:43.619][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:03:43.620][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:03:43.621][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:03:43.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:43.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:43.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:43.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:43.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:43.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:43.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:43.638][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.DEBUG[2025-08-09 16:03:43.641][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:03:43.642][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:03:43.644][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.TRACE[2025-08-09 16:03:43.945][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285).
biodb.DEBUG[2025-08-09 16:03:44.228][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:03:44.231][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.content"
biodb.TRACE[2025-08-09 16:03:44.235][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.request"
biodb.TRACE[2025-08-09 16:03:44.239][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml"
biodb.DEBUG[2025-08-09 16:03:44.241][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:03:44.242][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:03:44.244][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:03:44.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:44.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:44.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:44.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:44.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:44.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:44.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:44.261][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:44.262][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:44.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:44.264][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:44.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:44.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:44.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:44.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:44.271][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:44.272][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:44.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:44.274][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:44.276][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:44.277][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:44.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:44.279][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:44.281][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:44.282][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:44.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:44.284][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:44.286][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:44.287][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:44.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:44.289][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:44.291][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:44.292][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:44.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:44.295][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:44.296][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:44.297][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:44.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:44.300][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:44.301][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:44.302][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:44.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:44.305][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:44.306][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:44.307][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:44.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:44.310][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:44.311][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:44.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:44.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:44.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:44.316][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:44.318][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:44.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:44.320][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:44.321][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:44.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:44.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:44.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:44.326][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:44.328][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:44.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:44.330][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:44.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:44.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:44.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:44.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:44.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:44.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:44.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:44.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:44.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:44.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:44.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:44.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:44.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:44.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:44.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:44.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:44.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:44.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:44.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:44.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:44.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:44.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:44.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:44.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:44.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:44.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:44.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:44.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:44.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:44.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:44.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:44.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:44.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:44.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:44.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:44.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:44.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:44.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:44.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:44.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:44.379][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2025-08-09 16:03:44.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:44.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:44.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:44.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:44.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:44.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:44.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:44.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:44.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:44.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:44.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:44.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:44.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:44.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:44.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:44.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:44.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:44.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:44.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:44.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:44.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:44.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:44.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:44.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:44.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:44.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:44.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:44.418][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2025-08-09 16:03:44.419][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:03:44.421][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2025-08-09 16:03:44.423][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:03:44.424][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:03:44.425][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:03:44.427][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:03:44.428][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:03:44.429][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:03:44.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:44.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:44.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:44.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:44.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:44.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:44.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:44.446][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.DEBUG[2025-08-09 16:03:44.449][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:03:44.450][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:03:44.452][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.TRACE[2025-08-09 16:03:44.739][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174).
biodb.DEBUG[2025-08-09 16:03:45.034][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:03:45.037][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.content"
biodb.TRACE[2025-08-09 16:03:45.041][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.request"
biodb.TRACE[2025-08-09 16:03:45.045][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml"
biodb.DEBUG[2025-08-09 16:03:45.047][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:03:45.048][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:03:45.050][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:03:45.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:45.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:45.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:45.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:45.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:45.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:45.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:45.067][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:45.068][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:45.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.071][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:45.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:45.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.081][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:45.083][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:45.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.086][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.087][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:45.089][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:45.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.091][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.093][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:45.094][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:45.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.096][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.098][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:45.099][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:45.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.101][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.103][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:45.104][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:45.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.106][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.108][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:45.109][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:45.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.111][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.113][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:45.114][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:45.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.116][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.118][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:45.119][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:45.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.121][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.123][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:45.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:45.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.128][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:45.130][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:45.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.132][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.134][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:45.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:45.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.139][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:45.140][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:45.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.142][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:45.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:45.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:45.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:45.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:45.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:45.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:45.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:45.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:45.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:45.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:45.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:45.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:45.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:45.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:45.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:45.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:45.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:45.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:45.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:45.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:45.201][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2025-08-09 16:03:45.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:45.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:45.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:45.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:45.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:45.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:45.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:45.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:45.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:45.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:45.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:45.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:45.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:45.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:45.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:45.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:45.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:45.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:45.240][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2025-08-09 16:03:45.241][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:03:45.243][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2025-08-09 16:03:45.245][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:03:45.246][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:03:45.247][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:03:45.249][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:03:45.250][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:03:45.251][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:03:45.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:45.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:45.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:45.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:45.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:45.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:45.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:45.267][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.DEBUG[2025-08-09 16:03:45.271][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:03:45.272][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:03:45.273][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.TRACE[2025-08-09 16:03:45.570][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441).
biodb.DEBUG[2025-08-09 16:03:45.878][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:03:45.881][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.content"
biodb.TRACE[2025-08-09 16:03:45.885][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.request"
biodb.TRACE[2025-08-09 16:03:45.889][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml"
biodb.DEBUG[2025-08-09 16:03:45.891][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:03:45.893][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:03:45.894][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:03:45.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:45.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:45.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:45.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:45.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:45.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:45.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:45.911][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:45.913][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:45.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.915][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:45.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:45.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.921][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:45.923][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:45.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.925][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.927][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:45.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:45.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.931][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:45.933][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:45.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.935][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.937][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:45.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:45.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.942][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:45.943][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:45.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.945][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:45.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:45.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.951][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:45.953][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:45.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.955][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:45.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:45.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.961][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:45.962][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:45.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.965][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.966][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:45.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:45.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.971][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:45.972][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:45.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.975][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.976][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:45.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:45.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.981][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:45.982][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:45.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.984][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:45.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:45.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.991][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:45.992][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:45.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:45.994][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:45.996][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:45.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:45.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.001][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:46.002][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:46.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.005][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.006][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:46.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:46.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.011][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:46.012][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:46.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.014][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.016][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:46.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:46.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:46.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:46.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:46.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:46.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:46.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:46.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:46.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:46.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:46.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:46.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:46.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:46.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:46.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:46.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:46.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:46.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:46.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:46.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:46.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:46.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:46.068][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2025-08-09 16:03:46.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:46.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:46.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:46.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:46.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:46.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:46.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:46.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:46.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:46.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:46.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:46.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:46.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:46.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:46.101][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2025-08-09 16:03:46.102][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:03:46.104][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2025-08-09 16:03:46.106][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:03:46.107][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:03:46.109][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:03:46.110][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:03:46.111][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:03:46.112][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:03:46.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:46.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:46.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:46.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:46.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:46.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:46.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:46.129][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.DEBUG[2025-08-09 16:03:46.132][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:03:46.133][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:03:46.135][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.TRACE[2025-08-09 16:03:46.427][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442).
biodb.DEBUG[2025-08-09 16:03:46.736][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:03:46.739][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.content"
biodb.TRACE[2025-08-09 16:03:46.743][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.request"
biodb.TRACE[2025-08-09 16:03:46.747][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml"
biodb.DEBUG[2025-08-09 16:03:46.749][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:03:46.750][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:03:46.752][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:03:46.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:46.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:46.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:46.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:46.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:46.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:46.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:46.769][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:46.770][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:46.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.772][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:46.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:46.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.779][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:46.780][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:46.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.782][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.784][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:46.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:46.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.789][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:46.790][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:46.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.792][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.794][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:46.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:46.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.799][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:46.800][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:46.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.803][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:46.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:46.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.809][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:46.810][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:46.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.813][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:46.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:46.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.819][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:46.820][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:46.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.823][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.824][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:46.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:46.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.829][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:46.830][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:46.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.833][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.834][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:46.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:46.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.848][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:46.849][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:46.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.851][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:46.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:46.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.858][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:46.859][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:46.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.861][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:46.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:46.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.867][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:46.869][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:46.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.871][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.872][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:46.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:46.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.877][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:46.878][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:46.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.881][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.882][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:46.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:46.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:46.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:46.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:46.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:46.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:46.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:46.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:46.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:46.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:46.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:46.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:46.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:46.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:46.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:46.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:46.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:46.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:46.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:46.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:46.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:46.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:46.934][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2025-08-09 16:03:46.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:46.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:46.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:46.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:46.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:46.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:46.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:46.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:46.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:46.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:46.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:46.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:46.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:46.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:46.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:46.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:46.964][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2025-08-09 16:03:46.965][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:03:46.967][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2025-08-09 16:03:46.969][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:03:46.970][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:03:46.971][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:03:46.973][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:03:46.974][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:03:46.975][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:03:46.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:46.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:46.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:46.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:46.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:46.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:46.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:46.992][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.DEBUG[2025-08-09 16:03:46.995][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:03:46.996][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:03:46.998][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.TRACE[2025-08-09 16:03:47.301][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310).
biodb.DEBUG[2025-08-09 16:03:47.584][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:03:47.587][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.content"
biodb.TRACE[2025-08-09 16:03:47.592][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.request"
biodb.TRACE[2025-08-09 16:03:47.595][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml"
biodb.DEBUG[2025-08-09 16:03:47.597][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:03:47.599][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:03:47.600][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:03:47.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:47.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:47.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:47.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:47.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:47.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:47.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:47.617][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:47.618][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:47.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.621][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:47.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:47.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.627][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:47.628][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:47.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.631][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.632][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:47.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:47.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.637][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:47.638][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:47.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.640][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.642][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:47.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:47.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.647][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:47.648][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:47.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.650][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:47.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:47.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.657][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:47.658][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:47.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.660][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.661][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:47.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:47.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.666][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:47.668][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:47.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.670][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.671][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:47.673][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:47.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.675][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.676][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:47.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:47.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.681][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:47.682][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:47.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.685][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:47.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:47.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.691][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:47.692][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:47.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.694][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.696][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:47.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:47.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.701][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:47.702][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:47.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.704][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.706][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:47.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:47.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.711][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:47.712][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:47.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.714][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.716][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:47.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:47.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:47.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:47.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:47.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:47.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:47.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:47.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:47.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:47.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:47.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:47.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:47.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:47.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:47.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:47.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:47.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:47.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:47.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:47.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:47.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:47.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:47.768][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2025-08-09 16:03:47.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:47.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:47.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:47.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:47.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:47.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:47.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:47.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:47.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:47.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:47.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:47.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:47.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:47.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:47.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:47.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:47.797][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2025-08-09 16:03:47.799][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:03:47.801][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2025-08-09 16:03:47.803][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:03:47.804][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:03:47.806][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:03:47.807][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:03:47.808][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:03:47.809][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:03:47.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:47.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:47.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:47.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:47.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:47.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:47.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:47.826][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.DEBUG[2025-08-09 16:03:47.829][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:03:47.830][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:03:47.832][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.TRACE[2025-08-09 16:03:48.126][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216).
biodb.DEBUG[2025-08-09 16:03:48.415][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:03:48.418][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.content"
biodb.TRACE[2025-08-09 16:03:48.422][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.request"
biodb.TRACE[2025-08-09 16:03:48.425][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml"
biodb.DEBUG[2025-08-09 16:03:48.427][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:03:48.429][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:03:48.430][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:03:48.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:48.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:48.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:48.450][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:48.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:48.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:48.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:48.456][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:48.457][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:48.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.459][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:48.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:48.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.466][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:48.467][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:48.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.469][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.471][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:48.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:48.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.476][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:48.477][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:48.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.479][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.481][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:48.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:48.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.486][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:48.487][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:48.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.489][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:48.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:48.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.495][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:48.497][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:48.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.499][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:48.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:48.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.505][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:48.506][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:48.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.509][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.510][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:48.511][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:48.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.514][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.515][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:48.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:48.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.520][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:48.521][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:48.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.523][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:48.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:48.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.530][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:48.531][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:48.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.533][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.535][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:48.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:48.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.540][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:48.541][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:48.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.543][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.545][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:48.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:48.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.550][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:48.551][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:48.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.553][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.555][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:48.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:48.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:48.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:48.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:48.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:48.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:48.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:48.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:48.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:48.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:48.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:48.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:48.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:48.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:48.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:48.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:48.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:48.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:48.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:48.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:48.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:48.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:48.608][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2025-08-09 16:03:48.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:48.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:48.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:48.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:48.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:48.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:48.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:48.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:48.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:48.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:48.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:48.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:48.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:48.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:48.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:48.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:48.637][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2025-08-09 16:03:48.638][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:03:48.640][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2025-08-09 16:03:48.642][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:03:48.643][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:03:48.645][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:03:48.646][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:03:48.647][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:03:48.648][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:03:48.651][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:48.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:48.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:48.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:48.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:48.663][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:48.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:48.665][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.DEBUG[2025-08-09 16:03:48.668][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:03:48.670][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:03:48.671][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.TRACE[2025-08-09 16:03:48.970][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860).
biodb.DEBUG[2025-08-09 16:03:49.259][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:03:49.261][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.content"
biodb.TRACE[2025-08-09 16:03:49.266][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.request"
biodb.TRACE[2025-08-09 16:03:49.269][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml"
biodb.DEBUG[2025-08-09 16:03:49.272][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:03:49.273][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:03:49.275][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:03:49.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:49.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:49.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:49.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:49.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:49.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:49.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:49.292][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:49.294][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:49.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.296][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:49.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:49.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.302][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:49.304][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:49.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.306][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.307][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:49.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:49.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.312][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:49.314][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:49.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.316][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.317][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:49.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:49.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.322][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:49.324][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:49.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.326][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:49.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:49.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.332][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:49.334][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:49.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.336][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:49.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:49.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.342][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:49.344][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:49.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.346][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.347][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:49.349][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:49.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.351][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.353][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:49.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:49.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.357][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:49.359][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:49.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.361][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:49.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:49.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.367][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:49.369][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:49.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.371][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.372][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:49.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:49.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.377][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:49.379][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:49.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.381][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.382][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:49.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:49.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.387][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:49.388][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:49.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.391][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.392][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:49.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:49.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:49.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:49.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:49.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:49.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:49.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:49.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:49.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:49.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:49.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:49.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:49.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:49.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:49.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:49.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:49.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:49.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:49.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:49.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:49.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:49.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:49.445][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2025-08-09 16:03:49.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:49.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:49.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:49.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:49.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:49.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:49.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:49.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:49.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:49.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:49.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:49.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:49.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:49.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:49.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:49.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:49.481][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2025-08-09 16:03:49.483][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:03:49.484][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2025-08-09 16:03:49.486][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:03:49.487][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:03:49.489][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:03:49.490][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:03:49.491][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:03:49.492][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:03:49.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:49.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:49.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:49.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:49.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:49.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:49.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:49.509][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.DEBUG[2025-08-09 16:03:49.512][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:03:49.513][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:03:49.515][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.TRACE[2025-08-09 16:03:49.802][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861).
biodb.DEBUG[2025-08-09 16:03:50.084][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:03:50.088][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.content"
biodb.TRACE[2025-08-09 16:03:50.094][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.request"
biodb.TRACE[2025-08-09 16:03:50.098][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml"
biodb.DEBUG[2025-08-09 16:03:50.101][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:03:50.102][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:03:50.104][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:03:50.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:50.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:50.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:50.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:50.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:50.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:50.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:50.121][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:50.122][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:50.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.125][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:50.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:50.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.131][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:50.132][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:50.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.135][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.136][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:50.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:50.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.141][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:50.142][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:50.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.144][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.146][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:50.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:50.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.151][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:50.152][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:50.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.155][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:50.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:50.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.161][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:50.162][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:50.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.165][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.166][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:50.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:50.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.171][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:50.172][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:50.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.175][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.176][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:50.177][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:50.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.180][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.181][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:50.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:50.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.186][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:50.187][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:50.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.190][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:50.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:50.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.196][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:50.197][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:50.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.200][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.201][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:50.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:50.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.206][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:50.207][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:50.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.210][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.211][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:50.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:50.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.216][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:50.217][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:50.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.220][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.221][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:50.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:50.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:50.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:50.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:50.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:50.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:50.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:50.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:50.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:50.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:50.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:50.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:50.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:50.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:50.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:50.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:50.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:50.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:50.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:50.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:50.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:50.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:50.275][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2025-08-09 16:03:50.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:50.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:50.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:50.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:50.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:50.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:50.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:50.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:50.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:50.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:50.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:50.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:50.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:50.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:50.304][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2025-08-09 16:03:50.305][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:03:50.307][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2025-08-09 16:03:50.309][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:03:50.310][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:03:50.312][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:03:50.313][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:03:50.314][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:03:50.315][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:03:50.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:50.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:50.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:50.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:50.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:50.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:50.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:50.332][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.DEBUG[2025-08-09 16:03:50.335][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:03:50.337][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:03:50.338][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.TRACE[2025-08-09 16:03:50.631][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662).
biodb.DEBUG[2025-08-09 16:03:50.929][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:03:50.932][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.content"
biodb.TRACE[2025-08-09 16:03:50.937][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.request"
biodb.TRACE[2025-08-09 16:03:50.940][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml"
biodb.DEBUG[2025-08-09 16:03:50.942][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:03:50.944][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:03:50.945][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:03:50.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:50.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:50.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:50.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:50.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:50.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:50.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:50.962][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:50.964][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:50.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.966][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:50.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:50.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.972][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:50.973][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:50.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.976][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.977][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:50.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:50.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.982][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:50.983][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:50.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.986][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.987][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:50.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:50.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.992][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:50.993][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:50.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:50.995][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:50.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:50.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:50.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.002][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:51.003][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:51.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.005][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:51.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:51.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.012][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:51.013][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:51.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.015][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.017][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:51.018][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:51.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.020][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.022][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:51.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:51.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.026][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:51.028][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:51.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.030][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:51.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:51.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.036][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:51.038][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:51.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.040][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.041][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:51.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:51.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.046][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:51.048][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:51.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.050][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.051][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:51.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:51.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.065][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:51.067][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:51.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.070][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.072][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:51.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:51.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:51.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:51.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:51.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:51.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:51.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:51.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:51.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:51.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:51.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:51.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:51.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:51.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:51.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:51.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:51.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:51.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:51.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:51.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:51.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:51.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:51.125][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2025-08-09 16:03:51.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:51.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:51.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:51.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:51.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:51.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:51.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:51.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:51.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:51.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:51.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:51.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:51.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:51.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:51.155][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2025-08-09 16:03:51.156][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:03:51.158][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2025-08-09 16:03:51.159][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:03:51.161][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:03:51.162][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:03:51.163][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:03:51.165][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:03:51.166][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:03:51.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:51.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:51.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:51.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:51.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:51.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:51.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:51.183][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.DEBUG[2025-08-09 16:03:51.186][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:03:51.187][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:03:51.189][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.TRACE[2025-08-09 16:03:51.472][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084).
biodb.DEBUG[2025-08-09 16:03:51.753][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:03:51.756][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.content"
biodb.TRACE[2025-08-09 16:03:51.760][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.request"
biodb.TRACE[2025-08-09 16:03:51.763][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml"
biodb.DEBUG[2025-08-09 16:03:51.765][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:03:51.767][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:03:51.768][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:03:51.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:51.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:51.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:51.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:51.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:51.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:51.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:51.785][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:51.786][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:51.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.789][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:51.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:51.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.795][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:51.796][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:51.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.799][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.800][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:51.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:51.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.805][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:51.806][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:51.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.808][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.810][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:51.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:51.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.815][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:51.816][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:51.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.818][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.820][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:51.821][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:51.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.823][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.825][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:51.826][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:51.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.828][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.830][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:51.831][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:51.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.833][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.835][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:51.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:51.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.840][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:51.841][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:51.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.843][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:51.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:51.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.850][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:51.851][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:51.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.853][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.855][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:51.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:51.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.860][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:51.861][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:51.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.863][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.865][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:51.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:51.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.870][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:51.871][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:51.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.873][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:51.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:51.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:51.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:51.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:51.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:51.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:51.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:51.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:51.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:51.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:51.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:51.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:51.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:51.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:51.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:51.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:51.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:51.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:51.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:51.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:51.927][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2025-08-09 16:03:51.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:51.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:51.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:51.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:51.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:51.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:51.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:51.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:51.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:51.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:51.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:51.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:51.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:51.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:51.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:51.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:51.956][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2025-08-09 16:03:51.958][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:03:51.960][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2025-08-09 16:03:51.961][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:03:51.963][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:03:51.964][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:03:51.965][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:03:51.966][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:03:51.968][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:03:51.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:51.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:51.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:51.980][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:51.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:51.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:51.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:51.984][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.DEBUG[2025-08-09 16:03:51.988][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:03:51.989][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:03:51.990][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.TRACE[2025-08-09 16:03:52.276][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086).
biodb.DEBUG[2025-08-09 16:03:52.574][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:03:52.577][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.content"
biodb.TRACE[2025-08-09 16:03:52.581][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.request"
biodb.TRACE[2025-08-09 16:03:52.585][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml"
biodb.DEBUG[2025-08-09 16:03:52.587][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:03:52.588][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:03:52.590][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:03:52.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:52.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:52.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:52.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:52.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:52.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:52.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:52.607][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:52.608][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:52.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.611][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:52.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:52.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:52.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:52.617][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:52.618][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:52.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.621][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:52.622][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:52.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:52.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:52.627][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:52.628][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:52.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.631][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:52.632][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:52.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:52.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:52.637][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:52.639][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:52.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.641][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:52.642][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:52.644][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:52.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.655][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:52.656][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:52.658][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:52.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.660][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:52.661][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:52.663][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:52.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.665][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:52.666][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:52.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:52.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:52.671][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:52.673][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:52.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.675][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:52.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:52.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:52.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:52.681][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:52.683][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:52.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.685][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:52.687][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:52.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:52.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:52.692][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:52.693][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:52.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.695][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:52.697][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:52.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:52.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:52.702][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:52.703][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:52.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.705][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:52.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:52.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:52.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:52.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:52.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:52.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:52.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:52.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:52.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:52.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:52.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:52.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:52.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:52.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:52.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:52.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:52.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:52.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:52.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:52.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:52.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:52.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:52.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:52.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:52.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:52.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:52.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:52.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:52.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:52.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:52.755][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2025-08-09 16:03:52.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:52.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:52.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:52.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:52.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:52.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:52.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:52.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:52.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:52.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:52.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:52.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:52.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:52.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:52.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:52.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:52.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:52.786][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2025-08-09 16:03:52.787][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:03:52.789][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2025-08-09 16:03:52.791][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:03:52.792][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:03:52.794][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:03:52.795][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:03:52.796][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:03:52.797][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:03:52.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:52.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:52.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:52.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:52.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:52.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:52.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:52.815][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.DEBUG[2025-08-09 16:03:52.818][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:03:52.819][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:03:52.821][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.TRACE[2025-08-09 16:03:53.121][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123).
biodb.DEBUG[2025-08-09 16:03:53.419][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:03:53.421][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.content"
biodb.TRACE[2025-08-09 16:03:53.426][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.request"
biodb.TRACE[2025-08-09 16:03:53.429][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml"
biodb.DEBUG[2025-08-09 16:03:53.431][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:03:53.433][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:03:53.434][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:03:53.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:53.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:53.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:53.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:53.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:53.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:53.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:53.451][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:53.453][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:53.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.455][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:53.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:53.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.461][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:53.463][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:53.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.465][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.466][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:53.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:53.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.471][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:53.473][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:53.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.475][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.476][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:53.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:53.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.481][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:53.483][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:53.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.485][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.486][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:53.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:53.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.491][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:53.493][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:53.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.495][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:53.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:53.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.501][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:53.503][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:53.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.505][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.506][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:53.508][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:53.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.510][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.511][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:53.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:53.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.516][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:53.518][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:53.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.520][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:53.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:53.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.526][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:53.528][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:53.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.530][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.532][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:53.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:53.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.537][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:53.538][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:53.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.540][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.542][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:53.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:53.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.547][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:53.548][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:53.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.550][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.552][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:53.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:53.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:53.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:53.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:53.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:53.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:53.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:53.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:53.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:53.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:53.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:53.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:53.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:53.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:53.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:53.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:53.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:53.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:53.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:53.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:53.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:53.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:53.605][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2025-08-09 16:03:53.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:53.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:53.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:53.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:53.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:53.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:53.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:53.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:53.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:53.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:53.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:53.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:53.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:53.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:53.632][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:53.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:53.634][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2025-08-09 16:03:53.636][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:03:53.637][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2025-08-09 16:03:53.639][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:03:53.640][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:03:53.642][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:03:53.643][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:03:53.644][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:03:53.645][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:03:53.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:53.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:53.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:53.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:53.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:53.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:53.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:53.662][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.DEBUG[2025-08-09 16:03:53.665][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:03:53.667][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:03:53.668][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.TRACE[2025-08-09 16:03:53.970][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117).
biodb.DEBUG[2025-08-09 16:03:54.267][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:03:54.270][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.content"
biodb.TRACE[2025-08-09 16:03:54.274][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.request"
biodb.TRACE[2025-08-09 16:03:54.278][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml"
biodb.DEBUG[2025-08-09 16:03:54.288][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:03:54.290][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:03:54.291][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:03:54.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:54.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:54.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:54.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:54.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:54.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:54.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:54.308][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:54.309][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:54.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.311][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:54.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:54.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.318][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:54.319][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:54.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.321][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.323][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:54.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:54.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.328][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:54.329][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:54.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.331][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.333][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:54.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:54.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.337][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:54.339][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:54.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.341][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:54.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:54.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.347][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:54.348][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:54.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.351][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:54.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:54.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.357][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:54.358][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:54.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.360][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.362][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:54.363][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:54.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.365][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.367][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:54.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:54.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.372][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:54.373][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:54.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.375][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:54.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:54.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.382][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:54.383][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:54.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.385][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.387][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:54.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:54.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.392][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:54.393][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:54.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.395][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.397][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:54.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:54.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.402][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:54.403][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:54.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.405][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.407][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:54.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:54.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:54.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:54.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:54.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:54.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:54.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:54.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:54.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:54.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:54.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:54.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:54.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:54.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:54.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:54.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:54.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:54.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:54.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:54.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:54.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:54.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:54.460][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2025-08-09 16:03:54.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:54.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:54.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:54.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:54.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:54.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:54.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:54.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:54.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:54.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:54.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:54.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:54.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:54.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:54.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:54.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:54.490][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2025-08-09 16:03:54.491][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:03:54.493][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2025-08-09 16:03:54.495][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:03:54.496][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:03:54.498][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:03:54.499][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:03:54.500][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:03:54.501][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:03:54.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:54.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:54.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:54.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:54.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:54.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:54.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:54.518][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.DEBUG[2025-08-09 16:03:54.521][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:03:54.522][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:03:54.524][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.TRACE[2025-08-09 16:03:54.815][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307).
biodb.DEBUG[2025-08-09 16:03:55.114][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:03:55.117][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.content"
biodb.TRACE[2025-08-09 16:03:55.121][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.request"
biodb.TRACE[2025-08-09 16:03:55.125][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml"
biodb.DEBUG[2025-08-09 16:03:55.128][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:03:55.129][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:03:55.131][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:03:55.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:55.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:55.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:55.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:55.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:55.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:55.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:55.149][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:55.150][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:55.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.153][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:55.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:55.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.159][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:55.161][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:55.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.163][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.165][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:55.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:55.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.170][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:55.171][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:55.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.173][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.175][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:55.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:55.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.180][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:55.181][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:55.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.184][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:55.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:55.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.190][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:55.192][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:55.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.194][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:55.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:55.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.201][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:55.202][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:55.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.204][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.206][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:55.207][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:55.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.209][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.211][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:55.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:55.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.216][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:55.217][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:55.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.219][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:55.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:55.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.226][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:55.227][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:55.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.230][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.231][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:55.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:55.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.236][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:55.238][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:55.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.240][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.241][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:55.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:55.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.246][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:55.248][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:55.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.250][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.252][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:55.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:55.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:55.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:55.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:55.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:55.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:55.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:55.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:55.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:55.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:55.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:55.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:55.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:55.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:55.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:55.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:55.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:55.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:55.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:55.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:55.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:55.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:55.306][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2025-08-09 16:03:55.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:55.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:55.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:55.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:55.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:55.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:55.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:55.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:55.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:55.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:55.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:55.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:55.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:55.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:55.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:55.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:55.344][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2025-08-09 16:03:55.345][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:03:55.347][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2025-08-09 16:03:55.349][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:03:55.350][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:03:55.351][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:03:55.353][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:03:55.354][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:03:55.355][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:03:55.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:55.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:55.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:55.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:55.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:55.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:55.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:55.372][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.DEBUG[2025-08-09 16:03:55.375][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:03:55.377][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:03:55.378][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.TRACE[2025-08-09 16:03:55.678][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803).
biodb.DEBUG[2025-08-09 16:03:55.966][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:03:55.969][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.content"
biodb.TRACE[2025-08-09 16:03:55.973][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.request"
biodb.TRACE[2025-08-09 16:03:55.977][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml"
biodb.DEBUG[2025-08-09 16:03:55.979][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:03:55.980][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:03:55.982][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:03:55.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:55.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:55.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:55.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:55.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:55.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:55.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:55.999][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:56.000][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:56.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.002][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:56.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:56.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.009][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:56.010][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:56.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.012][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.014][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:56.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:56.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.019][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:56.020][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:56.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.022][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.024][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:56.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:56.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.029][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:56.030][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:56.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.032][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.034][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:56.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:56.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.039][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:56.040][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:56.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.043][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:56.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:56.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.049][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:56.050][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:56.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.052][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.054][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:56.055][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:56.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.058][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.059][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:56.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:56.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.064][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:56.065][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:56.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.068][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:56.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:56.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.074][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:56.076][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:56.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.078][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.080][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:56.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:56.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.085][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:56.086][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:56.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.088][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.090][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:56.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:56.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.094][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:56.096][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:56.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.098][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.100][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:56.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:56.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:56.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:56.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:56.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:56.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:56.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:56.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:56.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:56.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:56.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:56.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:56.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:56.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:56.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:56.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:56.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:56.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:56.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:56.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:56.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:56.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:56.154][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2025-08-09 16:03:56.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:56.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:56.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:56.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:56.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:56.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:56.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:56.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:56.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:56.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:56.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:56.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:56.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:56.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:56.184][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2025-08-09 16:03:56.185][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:03:56.187][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2025-08-09 16:03:56.189][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:03:56.190][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:03:56.192][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:03:56.193][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:03:56.194][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:03:56.195][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:03:56.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:56.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:56.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:56.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:56.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:56.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:56.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:56.212][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.DEBUG[2025-08-09 16:03:56.216][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:03:56.217][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:03:56.219][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.TRACE[2025-08-09 16:03:56.507][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962).
biodb.DEBUG[2025-08-09 16:03:56.809][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:03:56.812][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.content"
biodb.TRACE[2025-08-09 16:03:56.816][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.request"
biodb.TRACE[2025-08-09 16:03:56.820][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml"
biodb.DEBUG[2025-08-09 16:03:56.822][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:03:56.824][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:03:56.825][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:03:56.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:56.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:56.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:56.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:56.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:56.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:56.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:56.842][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:56.844][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:56.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.846][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:56.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:56.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.852][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:56.853][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:56.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.856][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.857][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:56.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:56.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.862][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:56.863][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:56.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.866][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.867][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:56.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:56.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.872][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:56.873][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:56.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.876][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:56.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:56.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.882][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:56.883][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:56.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.886][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:56.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:56.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.892][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:56.893][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:56.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.896][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.897][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:56.898][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:56.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.901][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.902][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:56.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:56.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.907][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:56.908][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:56.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.911][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:56.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:56.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.917][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:56.918][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:56.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:56.921][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:56.922][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:56.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:57.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.094][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:57.096][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:57.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.098][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.099][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:57.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:57.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.104][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:57.105][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:57.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.108][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.109][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:57.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:57.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:57.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:57.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:57.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:57.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:57.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:57.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:57.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:57.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:57.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:57.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:57.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:57.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:57.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:57.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:57.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:57.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:57.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:57.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:57.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:57.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:57.161][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2025-08-09 16:03:57.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:57.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:57.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:57.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:57.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:57.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:57.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:57.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:57.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:57.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:57.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:57.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:57.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:57.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:57.190][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2025-08-09 16:03:57.192][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:03:57.193][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2025-08-09 16:03:57.195][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:03:57.196][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:03:57.198][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:03:57.199][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:03:57.200][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:03:57.201][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:03:57.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:57.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:57.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:57.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:57.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:57.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:57.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:57.218][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655".
biodb.DEBUG[2025-08-09 16:03:57.221][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:03:57.222][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:03:57.224][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655".
biodb.TRACE[2025-08-09 16:03:57.527][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655).
biodb.DEBUG[2025-08-09 16:03:57.817][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:03:57.820][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2e175d021d3c86c1362fa584a90fbad.content"
biodb.TRACE[2025-08-09 16:03:57.824][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2e175d021d3c86c1362fa584a90fbad.request"
biodb.TRACE[2025-08-09 16:03:57.828][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml"
biodb.DEBUG[2025-08-09 16:03:57.830][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:03:57.831][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:03:57.833][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:03:57.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:57.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:57.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:57.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:57.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:57.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:57.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:57.849][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:57.851][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:57.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.853][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:57.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:57.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.859][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:57.861][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:57.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.863][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.864][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:57.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:57.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.869][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:57.871][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:57.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.873][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.874][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:57.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:57.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.879][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:57.881][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:57.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.883][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:57.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:57.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.889][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:57.890][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:57.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.893][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:57.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:57.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.899][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:57.900][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:57.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.902][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.904][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:57.905][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:57.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.910][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.911][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:57.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:57.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.916][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:57.917][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:57.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.920][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:57.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:57.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.926][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:57.927][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:57.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.930][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.931][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:57.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:57.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.936][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:57.937][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:57.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.939][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.941][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:57.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:57.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.946][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:57.947][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:57.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.949][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.951][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:57.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:57.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:57.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:57.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:57.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:57.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:57.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:57.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:57.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:57.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:57.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:57.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:57.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:57.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:57.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:57.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:57.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:57.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:57.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:57.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:57.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:57.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:57.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:58.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:58.003][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2025-08-09 16:03:58.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:58.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:58.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:58.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:58.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:58.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:58.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:58.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:58.033][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2025-08-09 16:03:58.034][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:03:58.036][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2025-08-09 16:03:58.037][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:03:58.039][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:03:58.040][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:03:58.041][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:03:58.043][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:03:58.044][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:03:58.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:58.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:58.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:58.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:58.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:58.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:58.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:03:58.061][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045".
biodb.DEBUG[2025-08-09 16:03:58.064][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:03:58.065][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:03:58.067][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045".
biodb.TRACE[2025-08-09 16:03:58.357][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045).
biodb.DEBUG[2025-08-09 16:03:58.639][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:03:58.642][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5fb598055294db64f197c61a6e36b01a.content"
biodb.TRACE[2025-08-09 16:03:58.646][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5fb598055294db64f197c61a6e36b01a.request"
biodb.TRACE[2025-08-09 16:03:58.650][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml"
biodb.DEBUG[2025-08-09 16:03:58.652][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:03:58.654][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:03:58.655][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:03:58.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:58.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:58.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:58.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:58.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:58.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:58.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:58.673][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:58.674][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:58.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.677][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:58.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:58.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.683][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:58.685][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:58.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.696][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.697][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:03:58.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:03:58.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.702][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:58.704][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:58.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.706][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.707][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:03:58.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:03:58.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.712][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:58.714][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:58.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.716][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.717][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:03:58.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:03:58.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.722][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:58.724][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:58.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.726][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:03:58.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:03:58.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.732][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:58.733][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:03:58.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.736][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.737][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:58.738][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.741][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.742][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:03:58.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.747][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:58.748][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:58.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.751][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:58.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:58.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.757][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:58.758][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:58.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.761][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.762][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:03:58.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:03:58.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.767][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:58.768][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:58.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.771][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.772][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:03:58.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:03:58.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.777][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:58.778][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:58.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.781][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.782][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:03:58.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:03:58.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:58.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:58.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:58.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:58.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:58.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:58.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:03:58.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:03:58.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:58.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:58.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:58.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:58.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:58.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:58.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:58.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:58.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:58.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:58.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:03:58.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:03:58.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:58.836][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2025-08-09 16:03:58.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:58.877][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:03:58.881][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:03:58.883][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-08-09 16:03:58.884][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:03:58.887][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-08-09 16:03:58.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:58.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:58.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:58.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:58.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:58.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:58.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:58.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:58.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:58.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:58.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:58.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:58.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:58.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:58.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:58.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:58.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:58.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:58.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:58.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:58.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:58.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:58.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:58.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:58.989][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:58.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:58.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:58.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:58.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:58.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:59.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:59.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:59.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:59.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:59.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:59.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:59.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:59.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:59.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:59.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:59.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:59.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:59.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:59.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:59.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:59.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:59.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:59.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:59.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:59.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:59.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:59.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:59.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:59.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:59.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:59.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:59.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:59.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:59.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:59.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:59.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:59.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:59.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:59.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:59.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:59.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:59.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:59.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:59.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:59.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:59.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:59.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:59.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:59.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:59.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.178][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:59.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:59.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:59.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:59.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:59.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:59.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:59.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:59.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:59.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:59.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:59.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:59.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:59.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:59.222][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:59.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:59.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:59.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:59.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:59.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:59.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:59.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:59.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:59.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:59.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:59.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:59.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:59.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:59.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:59.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:59.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:59.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:59.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:59.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:59.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:59.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:59.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:59.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:59.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:59.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:59.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:59.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:59.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:59.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:59.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:59.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:59.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:59.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:59.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:59.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:59.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:59.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:59.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:59.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:59.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:59.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:59.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:59.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:59.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:59.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:59.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:59.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:59.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:59.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:59.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:59.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:59.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:59.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:59.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:59.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:59.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:59.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:59.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:59.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:59.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:59.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:59.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:59.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:59.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:59.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:59.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:59.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:03:59.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:03:59.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:03:59.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:03:59.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:03:59.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:03:59.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:03:59.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:03:59.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:59.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:59.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:59.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:59.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:59.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:59.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:59.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:59.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:03:59.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:59.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:03:59.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:03:59.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:03:59.560][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:03:59.564][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:03:59.565][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:03:59.567][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-08-09 16:03:59.850][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-08-09 16:04:00.157][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:00.160][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content"
biodb.TRACE[2025-08-09 16:04:00.164][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.request"
biodb.DEBUG[2025-08-09 16:04:00.168][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:00.172][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:00.173][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:00.175][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-08-09 16:04:00.462][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-08-09 16:04:00.750][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:00.753][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content"
biodb.TRACE[2025-08-09 16:04:00.757][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.request"
biodb.DEBUG[2025-08-09 16:04:00.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:00.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:00.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:00.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:00.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:00.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:00.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:00.774][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2025-08-09 16:04:00.776][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:00.777][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2025-08-09 16:04:00.779][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:00.780][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:00.782][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:00.783][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:00.784][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:00.785][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:00.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:00.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:00.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:00.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:00.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:00.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:00.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:00.802][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.DEBUG[2025-08-09 16:04:00.805][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:00.806][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:00.808][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.TRACE[2025-08-09 16:04:01.101][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648).
biodb.DEBUG[2025-08-09 16:04:01.406][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:01.409][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.content"
biodb.TRACE[2025-08-09 16:04:01.413][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.request"
biodb.TRACE[2025-08-09 16:04:01.416][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml"
biodb.DEBUG[2025-08-09 16:04:01.419][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:01.420][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:01.422][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:01.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:01.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:01.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:01.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:01.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:01.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:01.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:01.439][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:01.440][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:01.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.443][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:01.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:01.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.449][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:01.450][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:01.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.453][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.454][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:01.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:01.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.459][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:01.460][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:01.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.463][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.464][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:01.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:01.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.469][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:01.470][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:01.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.473][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.474][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:01.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:01.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.479][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:01.480][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:01.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.483][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:01.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:01.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.489][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:01.490][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:01.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.493][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.494][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:01.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:01.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.499][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:01.500][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:01.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.502][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.504][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:01.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:01.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.509][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:01.510][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:01.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.512][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:01.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:01.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.519][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:01.520][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:01.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.522][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.524][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:01.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:01.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.529][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:01.530][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:01.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.532][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.534][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:01.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:01.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.538][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:01.540][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:01.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.542][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.543][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:01.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:01.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:01.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:01.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:01.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:01.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:01.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:01.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:01.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:01.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:01.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:01.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:01.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:01.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:01.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:01.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:01.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:01.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:01.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:01.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:01.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:01.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:01.596][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2025-08-09 16:04:01.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:01.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:01.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:01.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:01.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:01.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:01.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:01.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:01.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:01.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:01.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:01.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:01.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:01.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:01.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:01.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:01.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:01.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:01.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:01.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:01.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:01.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:01.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:01.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:01.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:01.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:01.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:01.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:01.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:01.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:01.654][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2025-08-09 16:04:01.655][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:01.657][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2025-08-09 16:04:01.659][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:01.660][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:01.662][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:01.663][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:01.664][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:01.665][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:01.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:01.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:01.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:01.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:01.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:01.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:01.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:01.682][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.DEBUG[2025-08-09 16:04:01.685][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:01.686][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:01.688][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.TRACE[2025-08-09 16:04:01.974][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447).
biodb.DEBUG[2025-08-09 16:04:02.272][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:02.275][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.content"
biodb.TRACE[2025-08-09 16:04:02.279][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.request"
biodb.TRACE[2025-08-09 16:04:02.282][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml"
biodb.DEBUG[2025-08-09 16:04:02.284][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:02.286][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:02.287][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:02.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:02.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:02.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:02.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:02.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:02.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:02.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:02.304][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:02.306][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:02.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.308][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:02.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:02.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.314][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:02.315][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:02.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.318][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.319][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:02.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:02.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.324][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:02.325][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:02.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.328][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.329][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:02.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:02.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.334][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:02.336][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:02.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.338][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:02.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:02.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.355][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:02.356][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:02.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.358][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:02.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:02.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.364][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:02.365][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:02.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.368][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.369][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:02.370][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:02.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.373][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.374][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:02.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:02.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.379][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.380][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.382][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.389][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:02.390][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:02.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.392][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.394][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:02.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:02.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.398][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:02.400][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:02.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.402][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.403][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:02.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:02.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.408][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:02.409][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:02.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.411][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.413][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:02.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:02.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:02.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:02.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:02.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:02.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:02.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:02.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:02.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:02.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:02.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:02.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:02.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:02.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:02.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:02.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:02.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:02.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:02.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:02.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:02.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:02.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:02.465][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2025-08-09 16:04:02.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:02.505][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:02.509][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:04:02.510][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-08-09 16:04:02.512][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:04:02.514][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-08-09 16:04:02.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:02.518][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:02.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:02.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:02.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:02.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:02.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:02.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:02.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:02.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:02.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:02.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:02.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:02.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:02.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:02.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:02.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:02.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:02.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:02.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:02.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:02.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:02.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:02.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:02.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:02.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:02.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:02.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:02.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:02.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:02.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:02.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:02.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:02.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:02.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:02.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:02.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:02.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:02.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:02.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:02.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:02.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:02.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:02.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:02.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:02.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:02.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:02.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:02.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:02.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:02.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:02.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:02.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:02.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:02.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:02.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:02.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:02.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:02.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:02.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:02.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:02.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:02.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:02.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:02.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:02.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:02.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:02.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:02.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:02.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:02.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:02.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:02.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:02.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:02.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:02.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:02.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:02.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:02.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:02.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:02.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:02.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:02.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:02.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:02.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:02.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:02.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:02.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:02.861][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:02.862][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:02.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:02.870][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:02.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:02.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:02.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:02.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:02.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:02.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:02.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:02.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:02.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:02.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:02.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:02.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:02.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:02.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:02.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:02.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:02.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:02.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:02.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:02.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:02.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:02.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:02.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:02.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:02.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:02.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:02.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:02.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:02.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:02.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:02.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:02.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:02.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:02.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:02.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:02.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:02.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:02.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:02.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:03.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:03.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:03.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:03.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:03.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:03.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:03.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:03.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:03.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:03.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:03.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:03.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:03.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:03.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:03.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:03.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:03.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:03.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:03.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:03.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:03.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:03.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:03.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:03.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:03.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:03.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:03.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:03.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:03.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:03.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:03.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:03.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:03.137][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:03.141][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:04:03.143][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-08-09 16:04:03.144][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:04:03.147][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-08-09 16:04:03.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:03.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:03.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:03.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:03.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:03.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:03.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:03.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:03.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:03.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:03.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:03.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:03.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:03.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:03.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:03.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:03.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:03.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:03.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:03.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:03.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:03.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:03.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:03.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:03.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:03.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:03.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:03.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:03.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:03.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:03.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:03.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:03.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:03.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:03.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:03.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:03.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:03.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:03.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:03.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:03.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:03.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:03.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:03.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:03.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:03.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:03.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:03.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:03.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:03.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:03.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:03.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:03.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:03.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:03.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:03.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:03.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:03.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:03.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:03.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:03.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:03.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:03.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:03.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:03.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:03.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:03.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:03.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:03.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:03.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:03.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:03.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:03.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:03.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:03.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:03.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:03.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:03.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:03.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:03.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:03.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:03.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:03.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:03.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:03.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:03.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:03.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:03.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:03.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:03.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:03.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:03.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:03.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:03.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:03.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:03.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:03.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:03.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:03.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:03.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:03.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:03.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:03.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:03.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:03.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:03.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:03.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:03.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:03.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:03.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:03.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:03.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:03.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:03.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:03.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:03.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:03.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:03.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:03.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:03.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:03.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:03.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:03.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:03.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:03.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:03.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:03.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:03.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:03.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:03.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:03.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:03.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:03.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:03.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:03.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:03.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:03.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:03.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:03.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:03.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:03.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:03.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:03.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:03.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:03.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:03.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:03.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:03.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:03.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:03.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:03.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:03.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:03.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:03.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:03.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:03.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:03.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:03.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:03.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:03.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:03.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.770][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:04:03.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:04:03.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-09 16:04:03.786][biodb::testThat]
biodb.INFO [2025-08-09 16:04:03.787][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-08-09 16:04:03.788][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-09 16:04:03.789][biodb::testThat]
biodb.TRACE[2025-08-09 16:04:03.793][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:04:03.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:04:03.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.798][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:04:03.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:04:03.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.802][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:04:03.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:04:03.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:03.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:03.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:03.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:03.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:03.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:03.878][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:03.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:03.882][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:03.886][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:04:03.887][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-08-09 16:04:03.889][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:04:03.891][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-08-09 16:04:03.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:03.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:03.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:03.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:03.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:03.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:03.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:03.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:03.922][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:03.925][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:04:03.927][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-08-09 16:04:03.928][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:04:03.931][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-08-09 16:04:03.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:03.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:03.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:03.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:03.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:03.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:03.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:03.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:03.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:03.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:03.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:03.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:03.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:03.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:03.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:03.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:03.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:03.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:03.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:03.989][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:04:03.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:03.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:03.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:04.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:04.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:04.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:04.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:04.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:04.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:04.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:04.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:04.017][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:04.018][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:04.019][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:04.021][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:04.022][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:04.023][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.024][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:04.027][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:04.028][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.029][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:04.031][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:04.033][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:04.034][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:04.035][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.036][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:04.039][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:04.040][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:04.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:04.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:04.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:04.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:04.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:04.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:04.063][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-08-09 16:04:04.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:04.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:04.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:04.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:04.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:04.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:04.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:04.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:04.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:04.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:04.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:04.088][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:04.089][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:04.090][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:04.091][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:04.093][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:04.094][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.096][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:04.100][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:04.101][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.103][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:04.106][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:04.108][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:04.110][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:04.112][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.113][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:04.117][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:04.118][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:04.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:04.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:04.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:04.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:04.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:04.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:04.147][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-09 16:04:04.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:04.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:04.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:04.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:04.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:04.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:04.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:04.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:04.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:04.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:04.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:04.171][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:04.173][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:04.174][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:04.175][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:04.176][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:04.177][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.178][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:04.181][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:04.182][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.183][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:04.185][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:04.186][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:04.188][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:04.189][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.190][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:04.192][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:04.193][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:04.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:04.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:04.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:04.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:04.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:04.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:04.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:04.209][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-08-09 16:04:04.210][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:04:04.212][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:04:04.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:04.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:04.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:04.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:04.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:04.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:04.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:04.230][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:04.233][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:04.235][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:04.237][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-08-09 16:04:04.521][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-08-09 16:04:04.809][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:04.812][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content"
biodb.TRACE[2025-08-09 16:04:04.816][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.request"
biodb.DEBUG[2025-08-09 16:04:04.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:04.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:04.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:04.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:04.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:04.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:04.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:04.834][private$loadEntries] Creating entries from ids [1]: "113227".
biodb.DEBUG[2025-08-09 16:04:04.835][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:04.837][cch$loadFileContent] Trying to load 1 files from cache: [1]: "113227".
biodb.TRACE[2025-08-09 16:04:04.838][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:04.840][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:04.841][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:04.842][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:04.843][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:04.844][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:04.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:04.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:04.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:04.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:04.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:04.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:04.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:04.861][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.DEBUG[2025-08-09 16:04:04.864][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:04.865][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:04.867][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.TRACE[2025-08-09 16:04:05.171][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227).
biodb.DEBUG[2025-08-09 16:04:05.462][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:05.464][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.content"
biodb.TRACE[2025-08-09 16:04:05.469][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.request"
biodb.TRACE[2025-08-09 16:04:05.472][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/113227.xml"
biodb.DEBUG[2025-08-09 16:04:05.474][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:05.476][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:05.477][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:05.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:05.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:05.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:05.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:05.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:05.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:05.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:05.493][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:05.495][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:05.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.497][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:05.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:05.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.503][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:05.504][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:05.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.507][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.508][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:05.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:05.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.513][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:05.514][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:05.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.516][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.518][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:05.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:05.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.523][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:05.524][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:05.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.526][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.528][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:05.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:05.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.533][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:05.534][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:05.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.536][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.538][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:05.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:05.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.542][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:05.544][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:05.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.546][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.547][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:05.549][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:05.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.551][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.552][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:05.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:05.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.557][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:05.558][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:05.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.561][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:05.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:05.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.567][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:05.568][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:05.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.571][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.572][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:05.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:05.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.577][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:05.578][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:05.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.581][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.582][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:05.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:05.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.587][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:05.588][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:05.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.590][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.592][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:05.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:05.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:05.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:05.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:05.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:05.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:05.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:05.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:05.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:05.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:05.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:05.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:05.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:05.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:05.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:05.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:05.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:05.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:05.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:05.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:05.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:05.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:05.644][self$createEntryFromContent] Accession numbers: 113227.
biodb.TRACE[2025-08-09 16:04:05.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:05.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:05.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:05.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:05.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:05.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:05.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:05.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:05.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:05.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:05.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:05.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:05.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:05.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:05.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:05.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:05.674][private$loadEntries] Creating entries from ids [1]: "169712".
biodb.DEBUG[2025-08-09 16:04:05.675][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:05.677][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169712".
biodb.TRACE[2025-08-09 16:04:05.679][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:05.680][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:05.681][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:05.683][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:05.684][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:05.685][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:05.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:05.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:05.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:05.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:05.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:05.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:05.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:05.702][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.DEBUG[2025-08-09 16:04:05.705][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:05.706][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:05.708][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.TRACE[2025-08-09 16:04:05.999][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712).
biodb.DEBUG[2025-08-09 16:04:06.282][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:06.285][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.content"
biodb.TRACE[2025-08-09 16:04:06.289][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.request"
biodb.TRACE[2025-08-09 16:04:06.293][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169712.xml"
biodb.DEBUG[2025-08-09 16:04:06.306][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:06.308][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:06.310][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:06.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:06.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:06.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:06.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:06.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:06.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:06.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:06.328][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:06.329][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:06.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.331][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:06.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:06.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.338][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:06.339][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:06.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.341][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.343][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:06.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:06.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.348][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:06.349][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:06.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.351][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.353][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:06.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:06.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.358][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:06.359][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:06.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.361][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:06.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:06.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.368][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:06.369][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:06.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.371][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.373][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:06.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:06.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.378][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:06.379][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:06.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.381][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.383][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:06.384][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:06.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.386][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.388][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:06.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:06.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.393][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:06.394][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:06.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.396][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:06.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:06.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.403][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:06.404][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:06.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.407][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.409][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:06.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:06.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.415][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:06.416][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:06.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.418][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.420][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:06.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:06.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.425][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:06.426][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:06.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.428][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.430][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:06.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:06.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:06.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:06.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:06.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:06.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:06.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:06.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:06.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:06.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:06.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:06.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:06.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:06.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:06.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:06.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:06.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:06.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:06.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:06.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:06.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:06.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:06.485][self$createEntryFromContent] Accession numbers: 169712.
biodb.TRACE[2025-08-09 16:04:06.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:06.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:06.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:06.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:06.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:06.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:06.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:06.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:06.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:06.502][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:06.505][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:06.506][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:06.509][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-08-09 16:04:06.793][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-08-09 16:04:07.085][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:07.087][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content"
biodb.TRACE[2025-08-09 16:04:07.092][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.request"
biodb.DEBUG[2025-08-09 16:04:07.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:07.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:07.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:07.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:07.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:07.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:07.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:07.112][private$loadEntries] Creating entries from ids [1]: "4781".
biodb.DEBUG[2025-08-09 16:04:07.113][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:07.115][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4781".
biodb.TRACE[2025-08-09 16:04:07.116][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:07.118][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:07.119][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:07.120][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:07.121][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:07.122][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:07.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:07.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:07.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:07.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:07.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:07.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:07.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:07.139][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.DEBUG[2025-08-09 16:04:07.142][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:07.143][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:07.145][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.TRACE[2025-08-09 16:04:07.445][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781).
biodb.DEBUG[2025-08-09 16:04:07.752][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:07.756][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.content"
biodb.TRACE[2025-08-09 16:04:07.760][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.request"
biodb.TRACE[2025-08-09 16:04:07.764][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4781.xml"
biodb.DEBUG[2025-08-09 16:04:07.766][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:07.768][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:07.769][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:07.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:07.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:07.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:07.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:07.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:07.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:07.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:07.788][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:07.789][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:07.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.792][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:07.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:07.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.798][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:07.799][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:07.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.801][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.803][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:07.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:07.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.808][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:07.809][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:07.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.811][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.813][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:07.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:07.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.818][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:07.819][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:07.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.821][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:07.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:07.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.828][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:07.829][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:07.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.831][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:07.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:07.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.838][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:07.839][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:07.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.841][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.843][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:07.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:07.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.848][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:07.849][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:07.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.851][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.853][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:07.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:07.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.858][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:07.859][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:07.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.861][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:07.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:07.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.868][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:07.869][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:07.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.871][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.873][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:07.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:07.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.878][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:07.879][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:07.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.881][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.883][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:07.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:07.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.888][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:07.889][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:07.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.891][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.893][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:07.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:07.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:07.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:07.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:07.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:07.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:07.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:07.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:07.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:07.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:07.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:07.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:07.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:07.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:07.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:07.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:07.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:07.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:07.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:07.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:07.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:07.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:07.955][self$createEntryFromContent] Accession numbers: 4781.
biodb.TRACE[2025-08-09 16:04:07.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:07.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:07.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:07.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:07.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:07.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:07.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:07.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:07.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:07.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:07.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:07.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:07.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:07.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:07.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:07.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:07.984][private$loadEntries] Creating entries from ids [1]: "16587".
biodb.DEBUG[2025-08-09 16:04:07.985][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:07.987][cch$loadFileContent] Trying to load 1 files from cache: [1]: "16587".
biodb.TRACE[2025-08-09 16:04:07.988][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:07.990][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:07.991][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:07.992][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:07.993][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:07.995][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:07.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:07.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:07.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:08.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:08.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:08.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:08.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:08.011][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.DEBUG[2025-08-09 16:04:08.014][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:08.015][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:08.017][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.TRACE[2025-08-09 16:04:08.298][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587).
biodb.DEBUG[2025-08-09 16:04:08.607][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:08.610][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.content"
biodb.TRACE[2025-08-09 16:04:08.614][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.request"
biodb.TRACE[2025-08-09 16:04:08.617][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/16587.xml"
biodb.DEBUG[2025-08-09 16:04:08.619][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:08.621][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:08.622][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:08.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:08.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:08.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:08.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:08.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:08.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:08.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:08.639][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:08.640][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:08.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.643][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:08.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:08.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.649][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:08.650][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:08.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.653][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.654][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:08.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:08.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.659][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:08.660][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:08.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.662][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.664][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:08.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:08.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.669][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:08.670][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:08.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.672][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:08.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:08.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.679][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:08.680][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:08.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.682][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.684][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:08.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:08.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.688][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:08.690][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:08.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.692][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.693][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:08.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:08.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.698][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:08.699][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:08.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.702][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.703][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:08.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:08.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.708][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:08.709][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:08.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.711][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:08.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:08.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.718][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:08.719][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:08.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.721][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.723][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:08.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:08.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.728][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:08.729][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:08.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.731][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.733][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:08.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:08.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.738][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:08.739][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:08.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.741][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.742][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:08.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:08.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:08.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:08.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:08.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:08.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:08.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:08.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:08.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:08.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:08.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:08.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:08.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:08.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:08.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:08.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:08.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:08.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:08.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:08.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:08.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:08.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:08.795][self$createEntryFromContent] Accession numbers: 16587.
biodb.TRACE[2025-08-09 16:04:08.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:08.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:08.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:08.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:08.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:08.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:08.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:08.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:08.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:08.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:08.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:08.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:08.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:08.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:08.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:08.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:08.825][private$loadEntries] Creating entries from ids [1]: "19804".
biodb.DEBUG[2025-08-09 16:04:08.826][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:08.828][cch$loadFileContent] Trying to load 1 files from cache: [1]: "19804".
biodb.TRACE[2025-08-09 16:04:08.829][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:08.831][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:08.832][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:08.833][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:08.834][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:08.836][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:08.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:08.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:08.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:08.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:08.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:08.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:08.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:08.852][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.DEBUG[2025-08-09 16:04:08.855][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:08.857][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:08.858][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.TRACE[2025-08-09 16:04:09.153][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804).
biodb.DEBUG[2025-08-09 16:04:09.435][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:09.437][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.content"
biodb.TRACE[2025-08-09 16:04:09.442][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.request"
biodb.TRACE[2025-08-09 16:04:09.445][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19804.xml"
biodb.DEBUG[2025-08-09 16:04:09.447][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:09.449][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:09.450][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:09.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:09.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:09.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:09.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:09.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:09.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:09.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:09.467][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:09.468][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:09.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.470][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:09.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:09.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.477][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:09.478][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:09.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.480][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.482][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:09.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:09.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.487][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:09.488][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:09.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.490][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.492][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:09.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:09.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.497][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:09.498][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:09.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.500][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:09.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:09.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.506][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:09.508][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:09.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.510][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:09.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:09.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.525][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:09.526][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:09.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.528][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.530][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:09.531][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:09.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.533][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.535][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:09.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:09.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.540][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:09.541][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:09.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.543][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:09.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:09.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.549][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:09.551][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:09.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.553][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.554][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:09.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:09.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.559][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:09.560][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:09.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.563][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.564][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:09.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:09.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.569][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:09.570][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:09.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.572][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.574][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:09.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:09.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:09.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:09.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:09.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:09.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:09.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:09.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:09.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:09.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:09.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:09.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:09.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:09.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:09.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:09.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:09.626][self$createEntryFromContent] Accession numbers: 19804.
biodb.TRACE[2025-08-09 16:04:09.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:09.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:09.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:09.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:09.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:09.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:09.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:09.660][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:04:09.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:09.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:09.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:09.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:09.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:09.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:09.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:09.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.703][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:09.704][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:09.705][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:09.707][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:09.708][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:09.709][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.710][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.712][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.714][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.715][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.717][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.718][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:09.719][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:09.720][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.722][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.724][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.725][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:09.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.741][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-09 16:04:09.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:09.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:09.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:09.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:09.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:09.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:09.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:09.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.765][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:09.766][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:09.767][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:09.768][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:09.770][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:09.771][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.772][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.774][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.775][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.777][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.779][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.780][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:09.781][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:09.782][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.784][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.786][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.787][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:09.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.803][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-09 16:04:09.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:09.805][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:09.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:09.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:09.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:09.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:09.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:09.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.827][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:09.829][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:09.830][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:09.831][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:09.832][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:09.833][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.834][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.837][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.838][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.839][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.841][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.843][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:09.844][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:09.845][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.846][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.848][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.850][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:09.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:09.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:09.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:09.865][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-09 16:04:09.867][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:04:09.868][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:04:09.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:09.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:09.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:09.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:09.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:09.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:09.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:09.885][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:09.889][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:09.890][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:09.892][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-08-09 16:04:10.189][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-08-09 16:04:10.478][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:10.480][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content"
biodb.TRACE[2025-08-09 16:04:10.485][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.request"
biodb.DEBUG[2025-08-09 16:04:10.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:10.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:10.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:10.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:10.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:10.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:10.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:10.503][private$loadEntries] Creating entries from ids [1]: "159630".
biodb.DEBUG[2025-08-09 16:04:10.504][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:10.506][cch$loadFileContent] Trying to load 1 files from cache: [1]: "159630".
biodb.TRACE[2025-08-09 16:04:10.507][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:10.509][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:10.510][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:10.511][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:10.512][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:10.513][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:10.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:10.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:10.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:10.525][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:10.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:10.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:10.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:10.530][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.DEBUG[2025-08-09 16:04:10.533][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:10.534][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:10.536][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.TRACE[2025-08-09 16:04:10.840][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630).
biodb.DEBUG[2025-08-09 16:04:11.128][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:11.131][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.content"
biodb.TRACE[2025-08-09 16:04:11.136][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.request"
biodb.TRACE[2025-08-09 16:04:11.139][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/159630.xml"
biodb.DEBUG[2025-08-09 16:04:11.141][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:11.143][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:11.144][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:11.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:11.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:11.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:11.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:11.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:11.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:11.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:11.161][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:11.162][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:11.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.164][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:11.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:11.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.171][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:11.172][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:11.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.174][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.176][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:11.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:11.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.181][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:11.182][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:11.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.184][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.186][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:11.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:11.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.190][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:11.192][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:11.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.194][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:11.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:11.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.200][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:11.201][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:11.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.204][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:11.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:11.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.210][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:11.211][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:11.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.213][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.215][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:11.216][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:11.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.218][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.220][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:11.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:11.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.225][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:11.226][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:11.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.228][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:11.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:11.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.234][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:11.236][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:11.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.238][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.240][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:11.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:11.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.244][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:11.246][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:11.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.248][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.249][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:11.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:11.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.254][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:11.255][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:11.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.258][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.259][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:11.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:11.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:11.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:11.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:11.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:11.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:11.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:11.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:11.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:11.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:11.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:11.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:11.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:11.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:11.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:11.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:11.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:11.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:11.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:11.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:11.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:11.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:11.311][self$createEntryFromContent] Accession numbers: 159630.
biodb.TRACE[2025-08-09 16:04:11.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:11.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:11.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:11.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:11.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:11.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:11.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:11.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:11.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:11.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:11.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:11.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:11.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:11.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:11.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:11.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:11.340][private$loadEntries] Creating entries from ids [1]: "160202".
biodb.DEBUG[2025-08-09 16:04:11.341][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:11.343][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160202".
biodb.TRACE[2025-08-09 16:04:11.345][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:11.346][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:11.348][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:11.349][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:11.350][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:11.351][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:11.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:11.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:11.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:11.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:11.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:11.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:11.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:11.368][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.DEBUG[2025-08-09 16:04:11.371][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:11.372][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:11.373][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.TRACE[2025-08-09 16:04:11.677][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202).
biodb.DEBUG[2025-08-09 16:04:11.973][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:11.975][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.content"
biodb.TRACE[2025-08-09 16:04:11.979][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.request"
biodb.TRACE[2025-08-09 16:04:11.983][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160202.xml"
biodb.DEBUG[2025-08-09 16:04:11.985][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:11.986][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:11.988][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:11.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:11.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:11.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:11.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:11.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:12.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:12.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:12.004][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:12.005][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:12.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.008][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:12.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:12.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.014][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:12.015][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:12.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.017][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.019][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:12.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:12.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.024][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:12.025][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:12.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.027][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.029][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:12.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:12.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.034][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:12.035][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:12.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.037][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:12.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:12.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.043][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:12.045][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:12.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.047][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:12.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:12.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.053][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:12.054][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:12.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.056][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.058][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:12.059][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:12.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.061][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.063][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:12.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:12.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.068][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:12.069][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:12.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.071][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:12.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:12.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.077][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:12.079][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:12.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.081][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.083][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:12.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:12.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.099][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:12.100][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:12.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.102][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.104][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:12.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:12.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.109][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:12.110][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:12.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.113][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:12.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:12.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:12.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:12.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:12.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:12.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:12.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:12.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:12.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:12.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:12.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:12.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:12.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:12.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:12.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:12.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:12.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:12.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:12.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:12.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:12.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:12.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:12.168][self$createEntryFromContent] Accession numbers: 160202.
biodb.TRACE[2025-08-09 16:04:12.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:12.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:12.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:12.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:12.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:12.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:12.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:12.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:12.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:12.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:12.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:12.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:12.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:12.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:12.198][private$loadEntries] Creating entries from ids [1]: "160393".
biodb.DEBUG[2025-08-09 16:04:12.199][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:12.201][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160393".
biodb.TRACE[2025-08-09 16:04:12.202][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:12.204][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:12.205][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:12.206][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:12.208][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:12.209][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:12.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:12.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:12.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:12.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:12.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:12.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:12.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:12.226][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.DEBUG[2025-08-09 16:04:12.229][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:12.230][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:12.232][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.TRACE[2025-08-09 16:04:12.525][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393).
biodb.DEBUG[2025-08-09 16:04:12.817][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:12.819][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.content"
biodb.TRACE[2025-08-09 16:04:12.824][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.request"
biodb.TRACE[2025-08-09 16:04:12.827][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160393.xml"
biodb.DEBUG[2025-08-09 16:04:12.829][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:12.831][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:12.832][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:12.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:12.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:12.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:12.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:12.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:12.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:12.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:12.849][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:12.851][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:12.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.853][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:12.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:12.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.859][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:12.860][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:12.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.863][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.864][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:12.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:12.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.869][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:12.870][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:12.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.873][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.874][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:12.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:12.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.879][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:12.880][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:12.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.883][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:12.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:12.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.889][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:12.890][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:12.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.892][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:12.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:12.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.899][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:12.900][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:12.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.902][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.903][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:12.905][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:12.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.907][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.908][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:12.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:12.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.913][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:12.914][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:12.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.917][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:12.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:12.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.923][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:12.924][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:12.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.926][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.928][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:12.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:12.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.933][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:12.934][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:12.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.936][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.938][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:12.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:12.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.943][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:12.944][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:12.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.946][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.947][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:12.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:12.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:12.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:12.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:12.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:12.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:12.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:12.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:12.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:12.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:12.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:12.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:12.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:12.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:12.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:12.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:12.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:12.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:12.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:12.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:12.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:12.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:12.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:12.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:13.000][self$createEntryFromContent] Accession numbers: 160393.
biodb.TRACE[2025-08-09 16:04:13.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:13.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:13.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:13.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:13.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:13.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:13.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:13.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:13.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:13.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:13.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:13.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:13.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:13.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:13.029][private$loadEntries] Creating entries from ids [1]: "160991".
biodb.DEBUG[2025-08-09 16:04:13.030][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:13.032][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160991".
biodb.TRACE[2025-08-09 16:04:13.034][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:13.035][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:13.037][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:13.038][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:13.039][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:13.040][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:13.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:13.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:13.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:13.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:13.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:13.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:13.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:13.057][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.DEBUG[2025-08-09 16:04:13.060][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:13.061][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:13.063][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.TRACE[2025-08-09 16:04:13.358][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991).
biodb.DEBUG[2025-08-09 16:04:13.654][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:13.657][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.content"
biodb.TRACE[2025-08-09 16:04:13.661][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.request"
biodb.TRACE[2025-08-09 16:04:13.665][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160991.xml"
biodb.DEBUG[2025-08-09 16:04:13.667][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:13.669][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:13.670][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:13.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:13.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:13.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:13.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:13.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:13.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:13.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:13.687][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:13.688][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:13.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.691][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:13.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:13.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.706][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:13.707][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:13.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.709][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.711][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:13.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:13.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.715][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:13.717][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:13.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.719][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.721][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:13.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:13.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.725][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:13.727][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:13.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.729][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:13.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:13.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.735][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:13.736][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:13.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.738][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.740][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:13.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:13.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.745][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:13.746][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:13.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.748][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.749][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:13.751][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:13.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.753][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.754][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:13.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:13.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.759][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:13.760][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:13.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.763][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:13.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:13.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.769][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:13.770][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:13.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.772][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.774][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:13.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:13.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.779][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:13.780][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:13.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.782][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.783][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:13.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:13.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.788][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:13.789][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:13.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.792][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.793][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:13.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:13.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:13.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:13.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:13.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:13.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:13.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:13.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:13.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:13.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:13.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:13.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:13.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:13.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:13.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:13.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:13.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:13.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:13.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:13.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:13.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:13.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:13.845][self$createEntryFromContent] Accession numbers: 160991.
biodb.TRACE[2025-08-09 16:04:13.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:13.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:13.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:13.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:13.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:13.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:13.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:13.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:13.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:13.861][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:13.862][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:13.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:13.870][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:13.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:13.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:13.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:13.874][private$loadEntries] Creating entries from ids [1]: "164975".
biodb.DEBUG[2025-08-09 16:04:13.875][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:13.877][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164975".
biodb.TRACE[2025-08-09 16:04:13.879][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:13.880][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:13.881][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:13.883][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:13.884][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:13.885][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:13.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:13.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:13.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:13.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:13.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:13.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:13.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:13.901][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.DEBUG[2025-08-09 16:04:13.905][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:13.906][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:13.908][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.TRACE[2025-08-09 16:04:14.208][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975).
biodb.DEBUG[2025-08-09 16:04:14.494][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:14.497][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.content"
biodb.TRACE[2025-08-09 16:04:14.501][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.request"
biodb.TRACE[2025-08-09 16:04:14.504][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164975.xml"
biodb.DEBUG[2025-08-09 16:04:14.507][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:14.508][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:14.509][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:14.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:14.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:14.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:14.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:14.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:14.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:14.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:14.526][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:14.527][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:14.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.529][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:14.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:14.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.536][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:14.537][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:14.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.539][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.540][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:14.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:14.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.545][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:14.546][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:14.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.549][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.550][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:14.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:14.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.555][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:14.556][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:14.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.558][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:14.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:14.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.565][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:14.566][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:14.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.568][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.569][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:14.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:14.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.574][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:14.575][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:14.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.578][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.579][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:14.580][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:14.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.583][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.584][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:14.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:14.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.589][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:14.590][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:14.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.592][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:14.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:14.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.599][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:14.600][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:14.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.602][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.604][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:14.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:14.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.608][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:14.610][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:14.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.612][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.613][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:14.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:14.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.618][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:14.619][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:14.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.622][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.623][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:14.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:14.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:14.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:14.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:14.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:14.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:14.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:14.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:14.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:14.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:14.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:14.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:14.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:14.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:14.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:14.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:14.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:14.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:14.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:14.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:14.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:14.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:14.675][self$createEntryFromContent] Accession numbers: 164975.
biodb.TRACE[2025-08-09 16:04:14.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:14.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:14.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:14.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:14.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:14.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:14.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:14.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:14.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:14.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:14.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:14.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:14.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:14.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:14.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:14.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:14.712][private$loadEntries] Creating entries from ids [1]: "164994".
biodb.DEBUG[2025-08-09 16:04:14.713][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:14.715][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164994".
biodb.TRACE[2025-08-09 16:04:14.717][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:14.718][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:14.720][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:14.721][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:14.722][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:14.723][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:14.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:14.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:14.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:14.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:14.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:14.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:14.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:14.740][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.DEBUG[2025-08-09 16:04:14.743][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:14.744][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:14.745][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.TRACE[2025-08-09 16:04:15.035][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994).
biodb.DEBUG[2025-08-09 16:04:15.324][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:15.326][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.content"
biodb.TRACE[2025-08-09 16:04:15.331][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.request"
biodb.TRACE[2025-08-09 16:04:15.334][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164994.xml"
biodb.DEBUG[2025-08-09 16:04:15.336][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:15.338][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:15.339][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:15.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:15.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:15.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:15.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:15.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:15.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:15.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:15.356][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:15.358][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:15.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.360][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:15.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:15.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.366][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:15.368][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:15.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.370][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.371][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:15.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:15.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.376][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:15.378][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:15.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.380][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.382][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:15.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:15.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.386][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:15.388][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:15.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.390][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:15.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:15.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.396][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:15.398][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:15.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.400][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:15.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:15.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.406][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:15.408][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:15.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.410][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.411][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:15.413][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:15.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.415][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.416][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:15.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:15.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.421][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:15.422][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:15.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.425][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:15.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:15.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.431][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:15.432][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:15.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.434][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.436][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:15.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:15.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.441][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:15.442][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:15.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.444][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.446][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:15.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:15.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.451][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:15.452][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:15.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.454][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.456][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:15.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:15.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:15.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:15.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:15.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:15.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:15.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:15.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:15.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:15.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:15.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:15.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:15.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:15.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:15.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:15.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:15.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:15.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:15.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:15.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:15.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:15.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:15.509][self$createEntryFromContent] Accession numbers: 164994.
biodb.TRACE[2025-08-09 16:04:15.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:15.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:15.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:15.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:15.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:15.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:15.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:15.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:15.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:15.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:15.525][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:15.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:15.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:15.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:15.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:15.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:15.538][private$loadEntries] Creating entries from ids [1]: "169251".
biodb.DEBUG[2025-08-09 16:04:15.539][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:15.541][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169251".
biodb.TRACE[2025-08-09 16:04:15.543][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:15.544][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:15.546][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:15.547][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:15.548][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:15.549][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:15.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:15.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:15.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:15.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:15.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:15.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:15.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:15.566][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.DEBUG[2025-08-09 16:04:15.569][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:15.570][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:15.572][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.TRACE[2025-08-09 16:04:15.873][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251).
biodb.DEBUG[2025-08-09 16:04:16.172][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:16.175][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.content"
biodb.TRACE[2025-08-09 16:04:16.179][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.request"
biodb.TRACE[2025-08-09 16:04:16.183][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169251.xml"
biodb.DEBUG[2025-08-09 16:04:16.185][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:16.186][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:16.188][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:16.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:16.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:16.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:16.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:16.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:16.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:16.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:16.205][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:16.206][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:16.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.208][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:16.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:16.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.215][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:16.216][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:16.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.219][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.220][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:16.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:16.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.225][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:16.227][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:16.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.229][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.231][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:16.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:16.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.236][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:16.237][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:16.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.239][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:16.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:16.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.246][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:16.247][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:16.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.249][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:16.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:16.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.256][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:16.257][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:16.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.259][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.261][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:16.262][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:16.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.264][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.266][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:16.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:16.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.271][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:16.272][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:16.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.275][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:16.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:16.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.281][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:16.282][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:16.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.285][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.286][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:16.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:16.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.291][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:16.292][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:16.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.295][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.296][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:16.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:16.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.302][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:16.303][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:16.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.314][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.316][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:16.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:16.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:16.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:16.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:16.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:16.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:16.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:16.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:16.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:16.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:16.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:16.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:16.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:16.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:16.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:16.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:16.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:16.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:16.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:16.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:16.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:16.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:16.369][self$createEntryFromContent] Accession numbers: 169251.
biodb.TRACE[2025-08-09 16:04:16.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:16.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:16.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:16.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:16.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:16.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:16.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:16.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:16.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:16.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:16.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:16.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:16.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:16.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:16.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:16.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:16.399][private$loadEntries] Creating entries from ids [1]: "224261".
biodb.DEBUG[2025-08-09 16:04:16.400][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:16.402][cch$loadFileContent] Trying to load 1 files from cache: [1]: "224261".
biodb.TRACE[2025-08-09 16:04:16.404][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:16.405][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:16.406][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:16.408][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:16.409][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:16.410][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:16.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:16.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:16.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:16.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:16.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:16.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:16.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:16.427][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
biodb.DEBUG[2025-08-09 16:04:16.430][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:16.431][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:16.433][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
biodb.TRACE[2025-08-09 16:04:16.722][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261).
biodb.DEBUG[2025-08-09 16:04:17.013][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:17.015][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7ba99c29fa5d3888a543698650c3997e.content"
biodb.TRACE[2025-08-09 16:04:17.019][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7ba99c29fa5d3888a543698650c3997e.request"
biodb.TRACE[2025-08-09 16:04:17.023][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/224261.xml"
biodb.DEBUG[2025-08-09 16:04:17.025][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:17.026][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:17.028][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:17.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:17.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:17.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:17.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:17.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:17.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:17.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:17.045][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:17.046][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:17.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.048][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:17.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:17.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.055][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:17.056][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:17.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.058][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.060][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:17.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:17.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.065][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:17.066][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:17.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.068][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.070][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:17.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:17.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.075][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:17.076][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:17.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.078][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:17.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:17.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.085][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:17.086][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:17.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.088][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:17.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:17.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.095][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:17.096][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:17.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.099][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.101][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:17.103][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:17.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.106][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.107][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:17.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:17.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.112][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:17.113][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:17.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.116][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:17.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:17.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.122][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:17.123][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:17.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.125][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.127][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:17.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:17.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.132][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:17.133][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:17.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.135][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.137][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:17.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:17.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.142][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:17.143][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:17.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.145][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.147][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:17.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:17.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:17.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:17.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:17.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:17.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:17.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:17.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:17.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:17.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:17.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:17.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:17.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:17.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:17.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:17.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:17.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:17.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:17.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:17.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:17.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:17.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:17.200][self$createEntryFromContent] Accession numbers: 224261.
biodb.TRACE[2025-08-09 16:04:17.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:17.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:17.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:17.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:17.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:17.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:17.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:17.217][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:17.220][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:17.221][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:17.224][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-08-09 16:04:17.512][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-08-09 16:04:17.812][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:17.815][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content"
biodb.TRACE[2025-08-09 16:04:17.820][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.request"
biodb.DEBUG[2025-08-09 16:04:17.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:17.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:17.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:17.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:17.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:17.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:17.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:17.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:17.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:17.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:17.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:17.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:17.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:17.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:17.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:17.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:17.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:17.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:17.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:17.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:17.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:17.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:17.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:17.866][private$loadEntries] Creating entries from ids [1]: "71954".
biodb.DEBUG[2025-08-09 16:04:17.867][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:17.869][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71954".
biodb.TRACE[2025-08-09 16:04:17.871][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:17.872][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:17.874][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:17.875][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:17.876][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:17.877][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:17.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:17.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:17.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:17.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:17.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:17.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:17.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:17.894][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.DEBUG[2025-08-09 16:04:17.897][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:17.898][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:17.900][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.TRACE[2025-08-09 16:04:18.195][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954).
biodb.DEBUG[2025-08-09 16:04:18.505][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:18.508][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.content"
biodb.TRACE[2025-08-09 16:04:18.512][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.request"
biodb.TRACE[2025-08-09 16:04:18.515][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71954.xml"
biodb.DEBUG[2025-08-09 16:04:18.518][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:18.519][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:18.520][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:18.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:18.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:18.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:18.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:18.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:18.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:18.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:18.537][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:18.538][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:18.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.541][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:18.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:18.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.547][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:18.548][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:18.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.551][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.552][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:18.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:18.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.557][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:18.558][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:18.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.560][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.562][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:18.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:18.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.567][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:18.568][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:18.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.570][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:18.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:18.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.577][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:18.578][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:18.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.580][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:18.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:18.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.586][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:18.588][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:18.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.590][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.591][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:18.593][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:18.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.595][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.596][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:18.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:18.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.601][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:18.602][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:18.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.605][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:18.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:18.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.611][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:18.612][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:18.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.614][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.616][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:18.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:18.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.621][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:18.622][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:18.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.624][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.626][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:18.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:18.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.631][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:18.632][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:18.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.634][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.636][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:18.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:18.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:18.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:18.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:18.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:18.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:18.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:18.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:18.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:18.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:18.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:18.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:18.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:18.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:18.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:18.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:18.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:18.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:18.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:18.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:18.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:18.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:18.688][self$createEntryFromContent] Accession numbers: 71954.
biodb.TRACE[2025-08-09 16:04:18.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:18.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:18.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:18.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:18.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:18.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:18.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:18.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:18.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:18.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:18.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:18.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:18.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:18.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:18.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:18.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:18.717][private$loadEntries] Creating entries from ids [1]: "197612".
biodb.DEBUG[2025-08-09 16:04:18.719][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:18.720][cch$loadFileContent] Trying to load 1 files from cache: [1]: "197612".
biodb.TRACE[2025-08-09 16:04:18.722][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:18.723][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:18.725][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:18.726][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:18.727][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:18.728][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:18.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:18.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:18.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:18.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:18.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:18.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:18.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:18.745][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
biodb.DEBUG[2025-08-09 16:04:18.748][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:18.749][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:18.751][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
biodb.TRACE[2025-08-09 16:04:19.052][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612).
biodb.DEBUG[2025-08-09 16:04:19.344][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:19.347][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d602b140c80212c04a1a2ba98ef7dc4f.content"
biodb.TRACE[2025-08-09 16:04:19.351][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d602b140c80212c04a1a2ba98ef7dc4f.request"
biodb.TRACE[2025-08-09 16:04:19.355][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/197612.xml"
biodb.DEBUG[2025-08-09 16:04:19.357][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:19.358][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:19.360][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:19.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:19.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:19.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:19.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:19.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:19.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:19.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:19.377][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:19.378][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:19.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.380][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:19.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:19.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.386][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:19.388][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:19.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.390][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.391][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:19.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:19.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.396][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:19.397][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:19.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.400][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.401][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:19.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:19.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.406][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:19.408][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:19.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.410][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:19.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:19.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.416][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:19.417][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:19.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.420][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:19.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:19.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.426][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:19.427][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:19.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.430][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.431][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:19.432][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:19.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.435][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.436][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:19.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:19.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.441][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:19.442][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:19.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.444][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:19.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:19.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.453][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:19.455][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:19.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.457][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.459][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:19.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:19.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.463][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:19.465][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:19.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.467][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.469][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:19.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:19.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.473][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:19.475][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:19.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.477][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.478][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:19.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:19.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:19.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:19.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:19.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:19.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:19.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:19.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:19.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:19.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:19.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:19.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:19.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:19.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:19.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:19.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:19.540][self$createEntryFromContent] Accession numbers: 197612.
biodb.TRACE[2025-08-09 16:04:19.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:19.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:19.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:19.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:19.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:19.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:19.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:19.556][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:04:19.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:19.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:19.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:19.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:19.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:19.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:19.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:19.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.581][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:19.582][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:19.583][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:19.584][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:19.585][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:19.586][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.587][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.590][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.591][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.592][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.594][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.595][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:19.597][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:19.598][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.599][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.601][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.602][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:19.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.618][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-09 16:04:19.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:19.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:19.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:19.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:19.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:19.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:19.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:19.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.643][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:19.644][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:19.645][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:19.646][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:19.647][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:19.648][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.650][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.652][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.653][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.654][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.656][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.658][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:19.659][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:19.660][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.661][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.663][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.665][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:19.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.680][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-08-09 16:04:19.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:19.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:19.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:19.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:19.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:19.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:19.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:19.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.704][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:19.706][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:19.707][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:19.708][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:19.709][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:19.710][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.711][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.714][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.715][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.716][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.718][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.719][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:19.721][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:19.722][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.723][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.725][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.726][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:19.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:19.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.742][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-08-09 16:04:19.743][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:04:19.745][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-09 16:04:19.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:19.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:19.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:19.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:19.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:19.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:19.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:19.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:19.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:19.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:19.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:19.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:19.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:19.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:19.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:19.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:19.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:19.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:19.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:19.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:19.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:19.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:19.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:19.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:19.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:19.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:19.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:19.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:19.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:19.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:19.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:19.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:19.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:19.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:19.871][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:19.875][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:19.876][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:19.878][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-08-09 16:04:20.174][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-08-09 16:04:20.457][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:20.459][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content"
biodb.TRACE[2025-08-09 16:04:20.464][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.request"
biodb.DEBUG[2025-08-09 16:04:20.468][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:20.479][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:20.481][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:20.483][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-08-09 16:04:20.766][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-08-09 16:04:21.051][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:21.054][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content"
biodb.TRACE[2025-08-09 16:04:21.059][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.request"
biodb.DEBUG[2025-08-09 16:04:21.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:21.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:21.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:21.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:21.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:21.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:21.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:21.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:21.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:21.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:21.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:21.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:21.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:21.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:21.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:21.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:21.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:21.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:21.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:21.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:21.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:21.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:21.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:21.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:21.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:21.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:21.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:21.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:21.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:21.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:21.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:21.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:21.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:21.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:21.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:21.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:21.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:21.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:21.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:21.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:21.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:21.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:21.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:21.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:21.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:21.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:21.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:21.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:21.153][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:04:21.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:21.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:21.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:21.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:21.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:21.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:21.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:21.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:21.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:21.178][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:21.179][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:21.180][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:21.181][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:21.182][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:21.184][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.185][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.187][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:21.188][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.190][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.192][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:21.193][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:21.194][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:21.196][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.197][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.199][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:21.200][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:21.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:21.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:21.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:21.216][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-09 16:04:21.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:21.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:21.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:21.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:21.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:21.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:21.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:21.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:21.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:21.267][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:21.269][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:21.270][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:21.271][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:21.272][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:21.274][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.275][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.277][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:21.278][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.280][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.282][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:21.283][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:21.292][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:21.293][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.295][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.297][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:21.298][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:21.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:21.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:21.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:21.314][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-09 16:04:21.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:21.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:21.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:21.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:21.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:21.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:21.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:21.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:21.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:21.339][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:21.340][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:21.341][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:21.342][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:21.343][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:21.345][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.346][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.348][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:21.349][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.351][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.353][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:21.354][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:21.355][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:21.356][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.358][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.360][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:21.361][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:21.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:21.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:21.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:21.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:21.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:21.377][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-09 16:04:21.378][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:04:21.380][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:04:21.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:21.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:21.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:21.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:21.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:21.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:21.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:21.397][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:21.401][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:21.402][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:21.404][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-08-09 16:04:21.694][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-08-09 16:04:21.979][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:21.982][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content"
biodb.TRACE[2025-08-09 16:04:21.987][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.request"
biodb.DEBUG[2025-08-09 16:04:21.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:21.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:21.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:22.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:22.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:22.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:22.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:22.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:22.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:22.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:22.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:22.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:22.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:22.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:22.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:22.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:22.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:22.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:22.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:22.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:22.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:22.042][private$loadEntries] Creating entries from ids [1]: "91601".
biodb.DEBUG[2025-08-09 16:04:22.043][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:22.045][cch$loadFileContent] Trying to load 1 files from cache: [1]: "91601".
biodb.TRACE[2025-08-09 16:04:22.047][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:22.048][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:22.049][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:22.051][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:22.052][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:22.053][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:22.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:22.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:22.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:22.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:22.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:22.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:22.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:22.070][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.DEBUG[2025-08-09 16:04:22.073][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:22.074][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:22.076][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.TRACE[2025-08-09 16:04:22.365][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601).
biodb.DEBUG[2025-08-09 16:04:22.663][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:22.666][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.content"
biodb.TRACE[2025-08-09 16:04:22.670][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.request"
biodb.TRACE[2025-08-09 16:04:22.673][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91601.xml"
biodb.DEBUG[2025-08-09 16:04:22.675][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:22.677][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:22.678][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:22.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:22.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:22.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:22.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:22.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:22.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:22.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:22.694][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:22.696][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:22.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.698][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:22.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:22.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.704][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:22.705][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:22.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.708][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.709][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:22.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:22.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.714][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:22.715][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:22.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.717][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.719][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:22.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:22.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.724][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:22.725][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:22.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.727][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.729][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:22.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:22.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.734][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:22.735][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:22.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.737][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.739][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:22.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:22.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.743][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:22.745][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:22.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.747][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.748][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:22.749][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:22.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.752][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.753][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:22.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:22.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.758][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:22.759][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:22.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.761][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:22.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:22.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.768][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:22.769][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:22.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.771][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.773][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:22.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:22.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.777][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:22.779][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:22.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.781][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.782][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:22.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:22.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.787][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:22.788][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:22.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.791][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.792][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:22.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:22.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:22.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:22.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:22.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:22.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:22.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:22.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:22.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:22.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:22.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:22.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:22.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:22.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:22.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:22.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:22.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:22.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:22.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:22.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:22.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:22.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:22.844][self$createEntryFromContent] Accession numbers: 91601.
biodb.TRACE[2025-08-09 16:04:22.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:22.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:22.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:22.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:22.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:22.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:22.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:22.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:22.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:22.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:22.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:22.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:22.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:22.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:22.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:22.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:22.873][private$loadEntries] Creating entries from ids [1]: "95147".
biodb.DEBUG[2025-08-09 16:04:22.874][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:22.876][cch$loadFileContent] Trying to load 1 files from cache: [1]: "95147".
biodb.TRACE[2025-08-09 16:04:22.878][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:22.879][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:22.880][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:22.882][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:22.883][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:22.884][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:22.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:22.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:22.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:22.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:22.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:22.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:22.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:22.900][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.DEBUG[2025-08-09 16:04:22.903][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:22.905][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:22.906][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.TRACE[2025-08-09 16:04:23.203][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147).
biodb.DEBUG[2025-08-09 16:04:23.491][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:23.494][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.content"
biodb.TRACE[2025-08-09 16:04:23.498][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.request"
biodb.TRACE[2025-08-09 16:04:23.502][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/95147.xml"
biodb.DEBUG[2025-08-09 16:04:23.504][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:23.505][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:23.507][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:23.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:23.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:23.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:23.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:23.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:23.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:23.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:23.523][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:23.525][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:23.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.527][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:23.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:23.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.533][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:23.535][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:23.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.537][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.538][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:23.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:23.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.543][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:23.544][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:23.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.547][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.548][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:23.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:23.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.553][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:23.554][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:23.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.557][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:23.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:23.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.563][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:23.564][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:23.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.566][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:23.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:23.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.573][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:23.574][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:23.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.576][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.578][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:23.579][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:23.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.581][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.583][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:23.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:23.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.587][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:23.589][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:23.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.591][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:23.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:23.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.597][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:23.599][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:23.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.601][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.603][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:23.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:23.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.632][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:23.634][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:23.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.636][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.637][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:23.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:23.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.642][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:23.644][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:23.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.646][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.647][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:23.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:23.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:23.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:23.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:23.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:23.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:23.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:23.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:23.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:23.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:23.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:23.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:23.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:23.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:23.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:23.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:23.700][self$createEntryFromContent] Accession numbers: 95147.
biodb.TRACE[2025-08-09 16:04:23.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:23.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:23.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:23.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:23.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:23.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:23.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:23.716][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:04:23.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:23.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:23.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:23.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:23.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:23.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:23.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:23.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.740][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:23.741][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:23.743][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:23.744][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:23.745][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:23.746][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.747][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.749][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.751][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.752][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.754][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.755][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:23.756][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:23.758][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.759][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.761][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.762][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:23.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.778][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-09 16:04:23.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:23.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:23.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:23.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:23.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:23.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:23.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:23.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.803][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:23.804][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:23.805][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:23.806][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:23.807][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:23.808][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.810][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.812][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.813][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.814][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.817][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.818][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:23.819][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:23.820][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.822][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.824][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.825][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:23.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.841][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-08-09 16:04:23.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:23.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:23.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:23.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:23.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:23.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:23.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:23.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.865][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:23.866][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:23.868][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:23.869][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:23.870][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:23.871][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.872][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.875][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.876][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.877][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.879][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.880][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:23.882][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:23.883][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.884][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.886][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.887][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:23.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:23.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:23.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:23.903][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-08-09 16:04:23.905][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:04:23.906][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:04:23.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:23.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:23.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:23.917][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:23.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:23.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:23.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:23.923][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:23.927][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:23.928][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:23.930][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-08-09 16:04:24.226][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-08-09 16:04:24.512][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:24.515][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content"
biodb.TRACE[2025-08-09 16:04:24.520][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.request"
biodb.DEBUG[2025-08-09 16:04:24.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:24.525][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:24.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:24.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:24.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:24.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:24.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:24.538][private$loadEntries] Creating entries from ids [1]: "636".
biodb.DEBUG[2025-08-09 16:04:24.539][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:24.541][cch$loadFileContent] Trying to load 1 files from cache: [1]: "636".
biodb.TRACE[2025-08-09 16:04:24.542][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:24.544][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:24.545][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:24.546][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:24.548][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:24.549][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:24.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:24.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:24.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:24.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:24.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:24.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:24.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:24.566][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.DEBUG[2025-08-09 16:04:24.569][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:24.570][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:24.571][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.TRACE[2025-08-09 16:04:24.873][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636).
biodb.DEBUG[2025-08-09 16:04:25.170][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:25.173][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.content"
biodb.TRACE[2025-08-09 16:04:25.178][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.request"
biodb.TRACE[2025-08-09 16:04:25.181][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/636.xml"
biodb.DEBUG[2025-08-09 16:04:25.183][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:25.184][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:25.186][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:25.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:25.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:25.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:25.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:25.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:25.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:25.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:25.203][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:25.205][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:25.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.207][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:25.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:25.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.214][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:25.215][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:25.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.217][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.219][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:25.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:25.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.224][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:25.225][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:25.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.236][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.238][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:25.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:25.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.243][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:25.244][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:25.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.247][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:25.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:25.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.253][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:25.254][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:25.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.257][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:25.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:25.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.263][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:25.264][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:25.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.266][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.268][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:25.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:25.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.273][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:25.274][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:25.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.276][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.278][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:25.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:25.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.283][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:25.284][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:25.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.286][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:25.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:25.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.292][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:25.294][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:25.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.296][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.298][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:25.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:25.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.302][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:25.304][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:25.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.306][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.307][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:25.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:25.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.312][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:25.313][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:25.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.316][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.317][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:25.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:25.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:25.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:25.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:25.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:25.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:25.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:25.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:25.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:25.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:25.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:25.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:25.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:25.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:25.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:25.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:25.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:25.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:25.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:25.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:25.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:25.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:25.370][self$createEntryFromContent] Accession numbers: 636.
biodb.TRACE[2025-08-09 16:04:25.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:25.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:25.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:25.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:25.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:25.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:25.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:25.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:25.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:25.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:25.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:25.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:25.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:25.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:25.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:25.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:25.399][private$loadEntries] Creating entries from ids [1]: "64199".
biodb.DEBUG[2025-08-09 16:04:25.401][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:25.403][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64199".
biodb.TRACE[2025-08-09 16:04:25.404][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:25.406][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:25.407][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:25.408][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:25.410][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:25.411][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:25.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:25.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:25.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:25.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:25.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:25.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:25.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:25.427][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.DEBUG[2025-08-09 16:04:25.431][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:25.432][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:25.433][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.TRACE[2025-08-09 16:04:25.724][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199).
biodb.DEBUG[2025-08-09 16:04:26.019][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:26.021][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.content"
biodb.TRACE[2025-08-09 16:04:26.026][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.request"
biodb.TRACE[2025-08-09 16:04:26.029][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64199.xml"
biodb.DEBUG[2025-08-09 16:04:26.031][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:26.033][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:26.034][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:26.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:26.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:26.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:26.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:26.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:26.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:26.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:26.051][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:26.052][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:26.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.055][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:26.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:26.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.061][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:26.062][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:26.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.064][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.066][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:26.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:26.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.071][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:26.072][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:26.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.074][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.076][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:26.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:26.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.081][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:26.082][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:26.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.084][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:26.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:26.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.091][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:26.092][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:26.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.094][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:26.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:26.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.101][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:26.103][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:26.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.105][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.106][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:26.108][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:26.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.110][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.111][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:26.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:26.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.116][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:26.118][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:26.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.120][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:26.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:26.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.126][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:26.127][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:26.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.130][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.131][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:26.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:26.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.136][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:26.137][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:26.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.140][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.141][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:26.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:26.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.146][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:26.147][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:26.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.150][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.151][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:26.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:26.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:26.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:26.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:26.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:26.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:26.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:26.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:26.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:26.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:26.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:26.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:26.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:26.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:26.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:26.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:26.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:26.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:26.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:26.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:26.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:26.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:26.204][self$createEntryFromContent] Accession numbers: 64199.
biodb.TRACE[2025-08-09 16:04:26.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:26.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:26.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:26.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:26.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:26.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:26.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:26.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:26.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:26.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:26.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:26.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:26.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:26.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:26.234][private$loadEntries] Creating entries from ids [1]: "65648".
biodb.DEBUG[2025-08-09 16:04:26.235][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:26.237][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65648".
biodb.TRACE[2025-08-09 16:04:26.246][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:26.248][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:26.249][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:26.250][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:26.252][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:26.253][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:26.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:26.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:26.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:26.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:26.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:26.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:26.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:26.269][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.DEBUG[2025-08-09 16:04:26.272][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:26.274][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:26.275][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.TRACE[2025-08-09 16:04:26.582][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648).
biodb.DEBUG[2025-08-09 16:04:26.879][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:26.882][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.content"
biodb.TRACE[2025-08-09 16:04:26.886][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.request"
biodb.TRACE[2025-08-09 16:04:26.889][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65648.xml"
biodb.DEBUG[2025-08-09 16:04:26.891][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:26.893][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:26.894][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:26.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:26.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:26.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:26.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:26.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:26.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:26.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:26.911][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:26.912][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:26.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.914][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:26.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:26.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.921][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:26.922][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:26.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.924][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.926][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:26.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:26.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.931][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:26.932][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:26.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.934][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.936][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:26.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:26.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.941][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:26.942][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:26.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.944][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:26.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:26.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.950][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:26.952][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:26.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.954][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:26.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:26.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.960][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:26.961][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:26.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.964][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.965][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:26.966][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:26.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.969][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.970][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:26.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:26.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.975][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:26.976][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:26.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.978][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:26.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:26.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.985][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:26.986][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:26.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.988][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.990][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:26.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:26.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:26.995][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:26.996][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:26.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:26.998][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.000][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:27.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:27.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.005][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:27.006][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:27.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.008][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.010][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:27.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:27.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:27.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:27.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:27.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:27.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:27.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:27.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:27.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:27.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:27.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:27.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:27.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:27.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:27.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:27.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:27.063][self$createEntryFromContent] Accession numbers: 65648.
biodb.TRACE[2025-08-09 16:04:27.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:27.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:27.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:27.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:27.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:27.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:27.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:27.078][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:04:27.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:27.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:27.082][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:27.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:27.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:27.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:27.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:27.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.105][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:27.106][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:27.107][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:27.108][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:27.109][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:27.110][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.112][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.114][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.115][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.117][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.119][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.120][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:27.121][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:27.122][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.124][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.126][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.127][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:27.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.143][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-08-09 16:04:27.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:27.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:27.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:27.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:27.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:27.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:27.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:27.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.168][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:27.169][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:27.170][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:27.171][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:27.173][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:27.174][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.175][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.177][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.179][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.180][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.182][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.183][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:27.185][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:27.186][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.187][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.189][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.190][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:27.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.207][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-08-09 16:04:27.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:27.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:27.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:27.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:27.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:27.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:27.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:27.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.232][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:27.233][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:27.234][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:27.235][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:27.236][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:27.237][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.239][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.241][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.242][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.243][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.246][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.247][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:27.248][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:27.249][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.251][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.253][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.254][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:27.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.278][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-08-09 16:04:27.280][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:04:27.281][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-09 16:04:27.291][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:04:27.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:04:27.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.296][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:04:27.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:04:27.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.301][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:04:27.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:04:27.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-09 16:04:27.312][biodb::testThat]
biodb.INFO [2025-08-09 16:04:27.313][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-08-09 16:04:27.314][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-09 16:04:27.315][biodb::testThat]
biodb.TRACE[2025-08-09 16:04:27.319][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:04:27.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:04:27.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.324][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:04:27.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:04:27.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.328][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:04:27.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:04:27.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:27.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:27.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:27.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:27.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:27.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:27.405][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:27.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:27.409][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:27.412][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:04:27.414][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-08-09 16:04:27.415][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:04:27.418][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-08-09 16:04:27.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:27.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:27.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:27.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:27.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:27.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:27.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:27.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:27.449][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:27.453][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:04:27.455][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-08-09 16:04:27.456][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:04:27.459][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-08-09 16:04:27.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:27.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:27.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:27.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:27.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:27.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:27.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:27.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:27.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:27.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:27.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:27.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:27.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:27.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:27.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:27.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:27.518][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:04:27.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:27.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:27.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:27.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:27.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:27.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:27.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:27.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.543][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:27.544][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:27.545][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:27.546][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:27.547][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:27.548][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.550][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.552][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.553][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.554][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.557][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.558][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:27.559][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:27.560][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.562][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.564][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.565][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:27.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.581][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-08-09 16:04:27.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:27.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:27.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:27.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:27.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:27.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:27.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:27.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.606][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:27.607][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:27.608][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:27.609][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:27.610][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:27.611][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.613][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.615][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.616][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.617][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.620][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.621][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:27.622][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:27.623][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.624][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.627][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.628][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:27.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.644][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-09 16:04:27.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:27.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:27.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:27.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:27.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:27.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:27.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:27.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.669][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:27.670][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:27.671][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:27.672][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:27.674][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:27.675][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.676][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.678][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.680][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.681][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.683][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.684][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:27.686][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:27.687][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.688][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.690][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.691][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:27.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.714][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-08-09 16:04:27.715][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:04:27.716][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:04:27.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:27.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:27.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:27.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:27.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:27.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:27.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:27.734][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:27.737][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:04:27.739][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-08-09 16:04:27.740][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:04:27.743][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-08-09 16:04:27.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:27.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:27.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:27.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:27.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:27.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:27.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:27.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:27.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:27.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:27.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:27.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:27.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:27.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:27.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:27.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:27.804][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:27.807][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:04:27.809][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-08-09 16:04:27.810][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:04:27.813][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-08-09 16:04:27.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:27.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:27.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:27.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:27.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:27.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:27.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:27.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:27.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:27.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:27.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:27.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:27.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:27.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:27.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:27.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:27.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:27.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:27.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:27.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:27.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:27.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:27.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:27.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:27.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:27.901][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:04:27.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:27.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:27.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:27.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:27.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:27.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:27.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:27.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.926][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:27.927][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:27.928][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:27.929][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:27.930][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:27.932][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.933][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.935][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.936][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.937][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.940][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.941][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:27.942][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:27.943][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.945][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.947][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.948][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:27.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.964][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-09 16:04:27.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:27.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:27.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:27.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:27.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:27.977][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:27.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:27.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:27.989][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:27.990][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:27.991][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:27.993][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:27.994][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:27.995][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.996][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:27.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:27.998][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:28.000][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:28.001][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:28.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:28.003][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:28.004][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:28.006][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:28.007][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:28.008][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:28.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:28.010][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:28.012][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:28.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:28.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:28.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:28.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:28.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:28.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:28.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:28.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:28.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:28.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:28.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:28.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:28.028][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-09 16:04:28.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:28.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:28.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:28.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:28.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:28.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:28.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:28.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:28.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:28.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:28.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:28.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:28.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:28.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:28.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:28.053][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:28.054][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:28.055][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:28.056][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:28.057][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:28.058][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:28.060][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:28.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:28.062][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:28.063][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:28.065][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:28.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:28.067][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:28.068][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:28.069][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:28.070][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:28.072][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:28.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:28.074][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:28.075][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:28.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:28.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:28.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:28.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:28.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:28.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:28.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:28.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:28.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:28.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:28.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:28.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:28.091][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-09 16:04:28.092][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:04:28.094][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:04:28.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:28.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:28.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:28.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:28.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:28.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:28.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:28.112][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:28.116][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:04:28.118][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-08-09 16:04:28.119][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:04:28.122][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-08-09 16:04:28.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:28.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:28.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:28.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:28.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:28.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:28.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:28.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:28.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:28.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:28.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:28.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:28.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:28.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:28.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:28.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:28.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:28.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:28.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:28.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:28.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:28.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:28.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:28.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:28.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:28.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:28.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:28.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:28.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:28.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:28.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:28.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:28.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:28.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:28.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:28.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:28.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:28.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:28.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:28.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:28.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:28.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:28.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:28.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:28.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:28.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:28.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:28.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:28.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:28.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:28.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:28.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:28.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:28.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:28.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:28.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:28.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:28.218][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:28.221][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:28.222][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:28.224][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-08-09 16:04:28.520][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-08-09 16:04:28.899][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:28.902][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content"
biodb.TRACE[2025-08-09 16:04:28.908][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.request"
biodb.DEBUG[2025-08-09 16:04:28.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:28.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:28.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:28.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:28.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:28.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:28.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:28.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:28.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:28.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:28.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:28.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:28.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:28.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:28.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:28.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:28.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:28.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:28.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:28.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:28.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:28.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:28.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:28.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:28.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:28.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:28.956][private$loadEntries] Creating entries from ids [1]: "3017".
biodb.DEBUG[2025-08-09 16:04:28.957][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:28.959][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3017".
biodb.TRACE[2025-08-09 16:04:28.961][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:28.962][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:28.963][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:28.964][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:28.966][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:28.967][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:28.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:28.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:28.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:28.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:28.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:28.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:28.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:28.984][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.DEBUG[2025-08-09 16:04:28.987][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:28.988][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:28.990][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.TRACE[2025-08-09 16:04:29.286][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017).
biodb.DEBUG[2025-08-09 16:04:29.595][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:29.598][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.content"
biodb.TRACE[2025-08-09 16:04:29.602][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.request"
biodb.TRACE[2025-08-09 16:04:29.606][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3017.xml"
biodb.DEBUG[2025-08-09 16:04:29.608][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:29.609][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:29.611][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:29.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:29.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:29.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:29.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:29.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:29.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:29.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:29.628][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:29.629][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:29.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.632][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:29.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:29.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.638][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:29.639][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:29.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.642][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.643][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:29.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:29.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.648][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:29.649][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:29.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.651][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.653][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:29.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:29.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.658][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:29.659][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:29.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.661][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:29.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:29.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.668][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:29.669][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:29.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.671][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:29.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:29.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.678][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:29.679][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:29.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.681][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.683][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:29.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:29.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.688][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:29.689][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:29.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.691][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.693][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:29.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:29.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.698][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:29.699][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:29.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.701][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:29.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:29.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.708][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:29.709][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:29.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.711][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:29.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:29.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.718][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:29.719][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:29.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.721][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.723][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:29.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:29.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.728][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:29.729][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:29.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.731][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.733][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:29.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:29.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:29.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:29.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:29.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:29.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:29.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:29.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:29.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:29.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:29.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:29.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:29.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:29.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:29.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:29.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:29.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:29.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:29.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:29.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:29.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:29.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:29.786][self$createEntryFromContent] Accession numbers: 3017.
biodb.TRACE[2025-08-09 16:04:29.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:29.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:29.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:29.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:29.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:29.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:29.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:29.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:29.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:29.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:29.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:29.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:29.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:29.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:29.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:29.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:29.816][private$loadEntries] Creating entries from ids [1]: "3510".
biodb.DEBUG[2025-08-09 16:04:29.817][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:29.819][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3510".
biodb.TRACE[2025-08-09 16:04:29.821][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:29.822][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:29.823][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:29.824][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:29.826][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:29.827][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:29.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:29.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:29.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:29.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:29.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:29.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:29.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:29.844][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.DEBUG[2025-08-09 16:04:29.847][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:29.848][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:29.849][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.TRACE[2025-08-09 16:04:30.139][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510).
biodb.DEBUG[2025-08-09 16:04:30.441][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:30.444][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.content"
biodb.TRACE[2025-08-09 16:04:30.449][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.request"
biodb.TRACE[2025-08-09 16:04:30.452][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3510.xml"
biodb.DEBUG[2025-08-09 16:04:30.454][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:30.456][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:30.457][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:30.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:30.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:30.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:30.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:30.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:30.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:30.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:30.474][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:30.476][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:30.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.478][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:30.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:30.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.484][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:30.485][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:30.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.488][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.489][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:30.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:30.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.494][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:30.495][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:30.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.498][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.499][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:30.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:30.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.504][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:30.505][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:30.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.508][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:30.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:30.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.516][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:30.517][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:30.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.520][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:30.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:30.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.526][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:30.527][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:30.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.529][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.531][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:30.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:30.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.536][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:30.537][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:30.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.539][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.541][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:30.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:30.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.546][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:30.547][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:30.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.549][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:30.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:30.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.555][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:30.557][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:30.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.559][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.561][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:30.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:30.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.565][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:30.567][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:30.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.569][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.570][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:30.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:30.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.575][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:30.576][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:30.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.579][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.580][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:30.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:30.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:30.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:30.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:30.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:30.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:30.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:30.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:30.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:30.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:30.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:30.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:30.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:30.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:30.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:30.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:30.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:30.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:30.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:30.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:30.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:30.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:30.633][self$createEntryFromContent] Accession numbers: 3510.
biodb.TRACE[2025-08-09 16:04:30.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:30.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:30.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:30.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:30.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:30.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:30.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:30.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:30.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:30.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:30.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:30.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:30.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:30.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:30.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:30.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:30.662][private$loadEntries] Creating entries from ids [1]: "7554".
biodb.DEBUG[2025-08-09 16:04:30.663][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:30.665][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7554".
biodb.TRACE[2025-08-09 16:04:30.667][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:30.668][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:30.669][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:30.671][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:30.672][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:30.673][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:30.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:30.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:30.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:30.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:30.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:30.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:30.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:30.690][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.DEBUG[2025-08-09 16:04:30.693][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:30.694][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:30.696][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.TRACE[2025-08-09 16:04:30.994][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554).
biodb.DEBUG[2025-08-09 16:04:31.293][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:31.296][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.content"
biodb.TRACE[2025-08-09 16:04:31.300][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.request"
biodb.TRACE[2025-08-09 16:04:31.304][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7554.xml"
biodb.DEBUG[2025-08-09 16:04:31.306][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:31.308][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:31.309][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:31.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:31.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:31.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:31.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:31.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:31.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:31.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:31.326][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:31.327][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:31.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.330][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:31.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:31.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.336][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:31.337][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:31.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.340][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.341][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:31.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:31.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.346][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:31.347][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:31.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.350][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.351][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:31.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:31.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.356][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:31.357][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:31.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.360][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.361][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:31.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:31.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.366][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:31.367][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:31.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.369][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:31.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:31.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.376][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:31.377][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:31.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.379][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.381][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:31.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:31.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.386][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:31.387][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:31.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.389][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.391][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:31.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:31.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.396][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.397][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.399][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.406][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:31.407][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:31.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.409][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.411][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:31.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:31.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.416][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:31.417][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:31.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.419][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.421][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:31.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:31.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.426][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:31.427][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:31.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.429][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.431][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:31.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:31.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:31.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:31.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:31.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:31.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:31.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:31.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:31.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:31.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:31.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:31.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:31.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:31.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:31.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:31.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:31.493][self$createEntryFromContent] Accession numbers: 7554.
biodb.TRACE[2025-08-09 16:04:31.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:31.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:31.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:31.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:31.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:31.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:31.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:31.509][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:04:31.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:31.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:31.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:31.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:31.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:31.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:31.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:31.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.534][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:31.535][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:31.536][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:31.537][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:31.538][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:31.539][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.540][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.543][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.544][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.545][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.547][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.549][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:31.550][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:31.551][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.552][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.554][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.555][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:31.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.571][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-09 16:04:31.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:31.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:31.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:31.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:31.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:31.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:31.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:31.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.595][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:31.597][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:31.598][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:31.599][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:31.600][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:31.601][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.602][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.605][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.606][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.607][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.609][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.610][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:31.612][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:31.613][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.614][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.616][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.618][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:31.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.634][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2025-08-09 16:04:31.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:31.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:31.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:31.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:31.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:31.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:31.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:31.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.658][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:31.659][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:31.660][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:31.661][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:31.662][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:31.664][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.665][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.667][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.668][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.669][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.672][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.673][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:31.674][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:31.675][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.676][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.679][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.680][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:31.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.696][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7554].
biodb.DEBUG[2025-08-09 16:04:31.697][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:04:31.698][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-09 16:04:31.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:31.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:31.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:31.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:31.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:31.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:31.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:31.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:31.783][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:31.787][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:04:31.788][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-08-09 16:04:31.790][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:04:31.792][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-08-09 16:04:31.796][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:31.799][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:04:31.800][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-08-09 16:04:31.802][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:04:31.804][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-08-09 16:04:31.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:31.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:31.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:31.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:31.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:31.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:31.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:31.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:31.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:31.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:31.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:31.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:31.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:31.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:31.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:31.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:31.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:31.864][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:31.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:31.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:31.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:31.874][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:31.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:31.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:31.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:31.900][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:04:31.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:31.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:31.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:31.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:31.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:31.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:31.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:31.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.925][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:31.926][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:31.927][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:31.928][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:31.930][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:31.931][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.932][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.934][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.937][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.939][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.940][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:31.941][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:31.942][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.944][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.946][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.947][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:31.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.963][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-09 16:04:31.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:31.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:31.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:31.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:31.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:31.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:31.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:31.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.987][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:31.988][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:31.989][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:31.990][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:31.992][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:31.993][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.994][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:31.996][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:31.997][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:31.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:32.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:32.001][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:32.002][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:32.003][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:32.004][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:32.006][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:32.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:32.008][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:32.009][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:32.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:32.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:32.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:32.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:32.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:32.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:32.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:32.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:32.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:32.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:32.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:32.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:32.025][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-09 16:04:32.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:32.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:32.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:32.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:32.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:32.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:32.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:32.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:32.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:32.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:32.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:32.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:32.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:32.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:32.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:32.049][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:32.050][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:32.051][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:32.052][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:32.054][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:32.055][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:32.056][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:32.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:32.058][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:32.060][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:32.061][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:32.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:32.063][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:32.064][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:32.066][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:32.067][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:32.068][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:32.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:32.070][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:32.071][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:32.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:32.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:32.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:32.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:32.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:32.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:32.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:32.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:32.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:32.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:32.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:32.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:32.087][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-09 16:04:32.089][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:04:32.090][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:04:32.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:32.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:32.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:32.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:32.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:32.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:32.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:32.108][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:32.111][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:32.112][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:32.115][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-08-09 16:04:32.399][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-08-09 16:04:32.892][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:32.894][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.content"
biodb.TRACE[2025-08-09 16:04:32.899][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.request"
biodb.DEBUG[2025-08-09 16:04:32.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:32.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:32.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:32.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:32.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:32.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:32.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:32.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:32.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:32.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:32.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:32.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:32.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:32.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:32.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:32.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:32.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:32.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:32.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:32.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:32.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:32.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:32.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:32.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:32.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:32.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:32.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:32.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:32.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:32.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:32.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:32.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:32.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:32.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:32.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:32.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:32.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:32.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:32.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:32.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:32.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:32.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:32.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:32.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:32.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:32.973][private$loadEntries] Creating entries from ids [1]: "27495".
biodb.DEBUG[2025-08-09 16:04:32.975][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:32.977][cch$loadFileContent] Trying to load 1 files from cache: [1]: "27495".
biodb.TRACE[2025-08-09 16:04:32.978][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:32.979][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:32.981][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:32.982][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:32.983][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:32.984][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:32.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:32.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:32.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:32.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:32.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:32.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:33.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:33.001][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.DEBUG[2025-08-09 16:04:33.004][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:33.005][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:33.007][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.TRACE[2025-08-09 16:04:33.304][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495).
biodb.DEBUG[2025-08-09 16:04:33.594][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:33.597][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.content"
biodb.TRACE[2025-08-09 16:04:33.601][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.request"
biodb.TRACE[2025-08-09 16:04:33.604][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/27495.xml"
biodb.DEBUG[2025-08-09 16:04:33.607][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:33.608][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:33.610][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:33.611][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:33.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:33.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:33.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:33.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:33.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:33.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:33.627][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:33.628][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:33.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.630][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:33.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:33.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.637][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:33.638][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:33.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.640][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.642][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:33.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:33.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.646][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:33.648][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:33.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.650][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.652][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:33.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:33.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.657][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:33.658][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:33.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.660][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:33.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:33.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.667][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:33.668][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:33.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.670][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:33.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:33.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.686][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:33.688][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:33.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.690][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.692][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:33.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:33.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.696][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:33.698][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:33.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.700][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.701][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:33.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:33.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.706][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:33.708][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:33.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.710][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:33.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:33.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.716][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:33.718][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:33.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.720][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.721][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:33.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:33.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.726][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:33.727][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:33.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.730][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.731][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:33.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:33.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.736][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:33.737][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:33.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.740][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.741][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:33.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:33.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:33.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:33.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:33.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:33.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:33.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:33.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:33.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:33.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:33.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:33.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:33.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:33.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:33.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:33.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:33.794][self$createEntryFromContent] Accession numbers: 27495.
biodb.TRACE[2025-08-09 16:04:33.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:33.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:33.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:33.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:33.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:33.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:33.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:33.810][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:04:33.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:33.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:33.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:33.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:33.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:33.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:33.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:33.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.835][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:33.837][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:33.838][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:33.839][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:33.840][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:33.841][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.843][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.845][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.846][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.847][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.850][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.851][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:33.852][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:33.853][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.855][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.857][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.858][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:33.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.874][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-09 16:04:33.875][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:33.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:33.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:33.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:33.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:33.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:33.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:33.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.899][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:33.900][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:33.901][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:33.903][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:33.904][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:33.905][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.906][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.909][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.910][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.911][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.913][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.915][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:33.916][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:33.917][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.918][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.921][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.922][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:33.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.938][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-09 16:04:33.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:33.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:33.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:33.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:33.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:33.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:33.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:33.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.964][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:33.965][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:33.966][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:33.967][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:33.968][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:33.970][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.971][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.973][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.974][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.976][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.978][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.979][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:33.980][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:33.982][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.983][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.985][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.986][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:33.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:33.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:33.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:33.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:34.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.002][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [27495].
biodb.DEBUG[2025-08-09 16:04:34.004][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:04:34.005][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:04:34.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:34.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:34.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:34.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:34.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:34.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:34.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:34.022][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:34.026][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:04:34.027][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-08-09 16:04:34.029][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:04:34.031][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-08-09 16:04:34.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:34.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:34.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:34.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:34.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:34.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:34.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:34.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:34.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:34.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:34.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:34.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:34.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:34.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:34.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:34.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:34.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:34.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:34.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:34.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:34.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:34.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:34.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:34.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:34.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:34.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:34.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:34.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:34.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:34.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:34.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:34.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:34.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:34.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:34.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:34.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:34.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:34.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:34.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:34.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:34.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:34.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:34.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:34.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:34.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:34.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:34.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:34.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:34.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:34.142][private$loadEntries] Creating entries from ids [1]: "65675".
biodb.DEBUG[2025-08-09 16:04:34.143][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:34.145][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65675".
biodb.TRACE[2025-08-09 16:04:34.147][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:34.148][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:34.149][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:34.151][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:34.152][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:34.153][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:34.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:34.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:34.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:34.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:34.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:34.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:34.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:34.170][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.DEBUG[2025-08-09 16:04:34.173][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:34.174][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:34.176][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.TRACE[2025-08-09 16:04:34.464][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675).
biodb.DEBUG[2025-08-09 16:04:34.751][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:34.753][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.content"
biodb.TRACE[2025-08-09 16:04:34.758][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.request"
biodb.TRACE[2025-08-09 16:04:34.761][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65675.xml"
biodb.DEBUG[2025-08-09 16:04:34.764][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:34.765][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:34.767][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:34.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:34.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:34.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:34.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:34.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:34.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:34.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:34.784][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:34.785][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:34.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.788][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:34.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:34.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.794][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:34.795][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:34.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.798][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.799][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:34.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:34.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.804][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:34.805][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:34.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.808][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.809][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:34.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:34.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.814][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:34.816][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:34.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.818][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:34.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:34.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.824][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:34.826][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:34.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.828][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:34.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:34.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.835][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:34.836][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:34.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.838][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.840][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:34.841][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:34.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.844][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.845][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:34.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:34.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.851][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:34.853][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:34.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.855][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:34.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:34.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.862][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:34.863][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:34.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.865][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.867][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:34.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:34.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.872][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:34.873][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:34.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.876][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.877][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:34.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:34.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.882][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:34.883][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:34.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.885][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.887][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:34.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:34.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:34.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:34.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:34.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:34.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:34.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:34.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:34.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:34.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:34.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:34.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:34.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:34.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:34.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:34.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:34.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:34.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:34.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:34.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:34.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:34.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:34.943][self$createEntryFromContent] Accession numbers: 65675.
biodb.TRACE[2025-08-09 16:04:34.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:34.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:34.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:34.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:34.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:34.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:34.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:34.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:34.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:34.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:34.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:34.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:34.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:34.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:34.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:34.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:34.974][private$loadEntries] Creating entries from ids [1]: "66318".
biodb.DEBUG[2025-08-09 16:04:34.975][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:34.977][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66318".
biodb.TRACE[2025-08-09 16:04:34.978][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:34.980][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:34.981][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:34.982][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:34.984][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:34.985][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:34.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:34.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:34.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:34.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:34.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:35.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:35.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:35.002][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.DEBUG[2025-08-09 16:04:35.006][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:35.007][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:35.009][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.TRACE[2025-08-09 16:04:35.298][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318).
biodb.DEBUG[2025-08-09 16:04:35.598][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:35.601][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.content"
biodb.TRACE[2025-08-09 16:04:35.606][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.request"
biodb.TRACE[2025-08-09 16:04:35.609][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66318.xml"
biodb.DEBUG[2025-08-09 16:04:35.612][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:35.613][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:35.615][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:35.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:35.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:35.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:35.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:35.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:35.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:35.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:35.632][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:35.633][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:35.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.635][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:35.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:35.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.642][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:35.643][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:35.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.645][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.647][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:35.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:35.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.652][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:35.653][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:35.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.655][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.657][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:35.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:35.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.662][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:35.663][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:35.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.665][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:35.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:35.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.672][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:35.673][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:35.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.675][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:35.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:35.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.682][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:35.683][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:35.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.685][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.687][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:35.688][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:35.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.690][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.692][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:35.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:35.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.697][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:35.698][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:35.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.700][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:35.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:35.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.717][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:35.718][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:35.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.720][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.722][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:35.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:35.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.727][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:35.728][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:35.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.730][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.732][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:35.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:35.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.737][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:35.738][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:35.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.740][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.742][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:35.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:35.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:35.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:35.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:35.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:35.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:35.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:35.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:35.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:35.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:35.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:35.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:35.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:35.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:35.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:35.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:35.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:35.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:35.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:35.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:35.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:35.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:35.794][self$createEntryFromContent] Accession numbers: 66318.
biodb.TRACE[2025-08-09 16:04:35.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:35.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:35.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:35.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:35.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:35.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:35.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:35.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:35.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:35.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:35.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:35.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:35.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:35.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:35.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:35.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:35.823][private$loadEntries] Creating entries from ids [1]: "67547".
biodb.DEBUG[2025-08-09 16:04:35.825][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:35.827][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67547".
biodb.TRACE[2025-08-09 16:04:35.828][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:35.830][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:35.831][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:35.832][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:35.833][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:35.834][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:35.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:35.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:35.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:35.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:35.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:35.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:35.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:35.852][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.DEBUG[2025-08-09 16:04:35.855][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:35.856][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:35.858][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.TRACE[2025-08-09 16:04:36.155][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547).
biodb.DEBUG[2025-08-09 16:04:36.456][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:36.458][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.content"
biodb.TRACE[2025-08-09 16:04:36.463][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.request"
biodb.TRACE[2025-08-09 16:04:36.466][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67547.xml"
biodb.DEBUG[2025-08-09 16:04:36.468][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:36.470][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:36.471][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:36.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:36.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:36.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:36.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:36.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:36.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:36.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:36.489][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:36.490][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:36.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.493][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:36.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:36.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.499][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:36.500][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:36.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.502][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.504][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:36.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:36.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.509][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:36.510][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:36.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.512][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.514][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:36.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:36.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.519][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:36.520][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:36.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.522][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:36.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:36.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.529][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:36.530][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:36.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.532][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:36.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:36.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.539][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:36.540][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:36.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.542][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.544][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:36.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:36.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.548][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:36.550][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:36.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.552][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.554][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:36.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:36.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.559][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:36.560][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:36.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.562][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:36.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:36.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.569][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:36.570][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:36.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.572][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.574][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:36.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:36.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.579][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:36.580][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:36.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.582][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.584][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:36.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:36.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.589][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:36.590][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:36.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.592][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.594][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:36.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:36.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:36.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:36.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:36.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:36.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:36.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:36.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:36.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:36.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:36.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:36.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:36.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:36.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:36.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:36.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:36.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:36.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:36.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:36.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:36.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:36.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:36.647][self$createEntryFromContent] Accession numbers: 67547.
biodb.TRACE[2025-08-09 16:04:36.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:36.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:36.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:36.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:36.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:36.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:36.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:36.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:36.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:36.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:36.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:36.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:36.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:36.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:36.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:36.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:36.677][private$loadEntries] Creating entries from ids [1]: "69550".
biodb.DEBUG[2025-08-09 16:04:36.678][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:36.680][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69550".
biodb.TRACE[2025-08-09 16:04:36.682][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:36.683][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:36.685][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:36.686][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:36.687][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:36.688][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:36.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:36.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:36.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:36.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:36.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:36.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:36.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:36.706][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.DEBUG[2025-08-09 16:04:36.709][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:36.710][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:36.712][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.TRACE[2025-08-09 16:04:37.008][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550).
biodb.DEBUG[2025-08-09 16:04:37.299][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:37.302][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.content"
biodb.TRACE[2025-08-09 16:04:37.306][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.request"
biodb.TRACE[2025-08-09 16:04:37.310][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69550.xml"
biodb.DEBUG[2025-08-09 16:04:37.312][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:37.313][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:37.315][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:37.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:37.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:37.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:37.335][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:37.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:37.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:37.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:37.341][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:37.343][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:37.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.345][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:37.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:37.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.351][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:37.353][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:37.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.355][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.356][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:37.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:37.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.361][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:37.362][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:37.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.365][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.366][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:37.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:37.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.371][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:37.372][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:37.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.374][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:37.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:37.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.380][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:37.382][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:37.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.384][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:37.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:37.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.390][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:37.391][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:37.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.393][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.395][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:37.396][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:37.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.398][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.400][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:37.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:37.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.405][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:37.406][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:37.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.408][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:37.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:37.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.414][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:37.416][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:37.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.418][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.423][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:37.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:37.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.428][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:37.429][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:37.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.432][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.433][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:37.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:37.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.438][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:37.439][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:37.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.441][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.443][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:37.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:37.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:37.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:37.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:37.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:37.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:37.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:37.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:37.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:37.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:37.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:37.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:37.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:37.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:37.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:37.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:37.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:37.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:37.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:37.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:37.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:37.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:37.496][self$createEntryFromContent] Accession numbers: 69550.
biodb.TRACE[2025-08-09 16:04:37.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:37.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:37.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:37.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:37.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:37.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:37.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:37.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:37.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:37.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:37.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:37.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:37.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:37.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:37.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:37.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:37.525][private$loadEntries] Creating entries from ids [1]: "71520".
biodb.DEBUG[2025-08-09 16:04:37.526][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:37.528][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71520".
biodb.TRACE[2025-08-09 16:04:37.529][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:37.531][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:37.532][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:37.533][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:37.534][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:37.536][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:37.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:37.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:37.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:37.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:37.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:37.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:37.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:37.552][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.DEBUG[2025-08-09 16:04:37.555][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:37.556][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:37.558][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.TRACE[2025-08-09 16:04:37.857][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520).
biodb.DEBUG[2025-08-09 16:04:38.152][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:38.155][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.content"
biodb.TRACE[2025-08-09 16:04:38.159][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.request"
biodb.TRACE[2025-08-09 16:04:38.163][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71520.xml"
biodb.DEBUG[2025-08-09 16:04:38.165][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:38.166][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:38.168][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:38.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:38.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:38.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:38.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:38.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:38.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:38.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:38.185][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:38.186][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:38.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.188][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:38.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:38.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.195][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:38.196][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:38.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.198][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.200][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:38.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:38.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.205][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:38.206][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:38.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.208][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.210][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:38.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:38.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.215][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:38.216][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:38.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.218][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:38.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:38.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.224][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:38.226][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:38.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.228][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:38.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:38.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.234][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:38.235][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:38.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.238][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.239][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:38.240][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:38.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.243][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.244][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:38.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:38.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.249][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:38.250][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:38.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.252][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:38.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:38.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.259][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:38.260][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:38.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.262][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.264][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:38.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:38.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.269][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:38.270][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:38.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.273][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.274][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:38.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:38.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.279][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:38.280][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:38.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.283][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.284][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:38.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:38.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:38.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:38.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:38.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:38.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:38.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:38.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:38.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:38.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:38.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:38.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:38.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:38.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:38.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:38.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:38.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:38.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:38.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:38.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:38.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:38.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:38.345][self$createEntryFromContent] Accession numbers: 71520.
biodb.TRACE[2025-08-09 16:04:38.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:38.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:38.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:38.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:38.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:38.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:38.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:38.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:38.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:38.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:38.362][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:38.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:38.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:38.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:38.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:38.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:38.375][private$loadEntries] Creating entries from ids [1]: "77600".
biodb.DEBUG[2025-08-09 16:04:38.376][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:38.378][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77600".
biodb.TRACE[2025-08-09 16:04:38.380][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:38.381][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:38.382][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:38.383][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:38.385][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:38.386][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:38.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:38.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:38.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:38.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:38.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:38.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:38.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:38.402][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.DEBUG[2025-08-09 16:04:38.405][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:38.406][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:38.408][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.TRACE[2025-08-09 16:04:38.700][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600).
biodb.DEBUG[2025-08-09 16:04:38.998][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:39.000][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.content"
biodb.TRACE[2025-08-09 16:04:39.004][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.request"
biodb.TRACE[2025-08-09 16:04:39.008][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77600.xml"
biodb.DEBUG[2025-08-09 16:04:39.010][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:39.011][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:39.013][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:39.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:39.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:39.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:39.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:39.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:39.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:39.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:39.029][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:39.030][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:39.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.033][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:39.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:39.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.039][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:39.040][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:39.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.042][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.044][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:39.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:39.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.049][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:39.050][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:39.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.052][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.054][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:39.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:39.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.058][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:39.060][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:39.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.062][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:39.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:39.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.068][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:39.070][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:39.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.072][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:39.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:39.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.078][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:39.080][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:39.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.082][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.083][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:39.085][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:39.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.087][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.088][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:39.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:39.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.093][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:39.095][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:39.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.098][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:39.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:39.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.105][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:39.106][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:39.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.108][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.110][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:39.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:39.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.115][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:39.116][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:39.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.118][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.120][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:39.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:39.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.124][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:39.126][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:39.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.128][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.129][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:39.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:39.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:39.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:39.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:39.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:39.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:39.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:39.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:39.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:39.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:39.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:39.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:39.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:39.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:39.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:39.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:39.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:39.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:39.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:39.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:39.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:39.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:39.182][self$createEntryFromContent] Accession numbers: 77600.
biodb.TRACE[2025-08-09 16:04:39.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:39.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:39.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:39.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:39.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:39.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:39.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:39.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:39.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:39.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:39.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:39.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:39.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:39.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:39.212][private$loadEntries] Creating entries from ids [1]: "77601".
biodb.DEBUG[2025-08-09 16:04:39.213][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:39.215][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77601".
biodb.TRACE[2025-08-09 16:04:39.216][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:39.218][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:39.219][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:39.220][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:39.221][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:39.223][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:39.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:39.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:39.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:39.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:39.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:39.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:39.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:39.239][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.DEBUG[2025-08-09 16:04:39.243][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:39.244][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:39.245][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.TRACE[2025-08-09 16:04:39.544][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601).
biodb.DEBUG[2025-08-09 16:04:39.843][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:39.845][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.content"
biodb.TRACE[2025-08-09 16:04:39.850][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.request"
biodb.TRACE[2025-08-09 16:04:39.853][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77601.xml"
biodb.DEBUG[2025-08-09 16:04:39.855][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:39.857][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:39.858][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:39.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:39.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:39.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:39.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:39.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:39.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:39.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:39.875][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:39.877][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:39.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.879][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:39.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:39.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.885][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:39.886][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:39.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.889][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.890][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:39.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:39.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.895][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:39.896][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:39.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.899][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.900][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:39.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:39.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.905][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:39.906][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:39.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.909][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:39.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:39.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.915][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:39.916][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:39.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.919][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:39.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:39.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.925][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:39.926][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:39.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.928][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.930][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:39.931][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:39.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.933][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.935][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:39.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:39.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.940][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:39.941][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:39.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.953][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:39.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:39.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.960][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:39.961][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:39.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.963][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.965][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:39.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:39.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.969][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:39.971][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:39.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.973][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.974][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:39.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:39.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.979][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:39.980][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:39.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.983][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:39.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:39.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:39.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:39.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:39.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:39.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:39.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:39.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:40.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:40.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:40.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:40.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:40.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:40.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:40.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:40.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:40.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:40.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:40.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:40.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:40.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:40.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:40.036][self$createEntryFromContent] Accession numbers: 77601.
biodb.TRACE[2025-08-09 16:04:40.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:40.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:40.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:40.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:40.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:40.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:40.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:40.052][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:04:40.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:40.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:40.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:40.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:40.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:40.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:40.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:40.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.077][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.079][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:40.080][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:40.081][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:40.082][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.083][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.085][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.087][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.088][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.089][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.091][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.093][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.094][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.095][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.096][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.100][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.102][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:40.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.118][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-08-09 16:04:40.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:40.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:40.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:40.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:40.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:40.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:40.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:40.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.142][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.143][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:40.145][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:40.146][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:40.147][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.148][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.149][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.152][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.153][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.154][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.156][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.157][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.159][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.160][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.161][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.163][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.164][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:40.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.180][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77600].
biodb.DEBUG[2025-08-09 16:04:40.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:40.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:40.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:40.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:40.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:40.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:40.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:40.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.205][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.206][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:40.208][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:40.209][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:40.210][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.211][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.212][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.215][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.216][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.217][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.219][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.221][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.222][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.223][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.224][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.226][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.228][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:40.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.244][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77601].
biodb.DEBUG[2025-08-09 16:04:40.245][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:04:40.246][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-09 16:04:40.257][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:04:40.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:04:40.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.262][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:04:40.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:04:40.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.266][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:04:40.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:04:40.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-09 16:04:40.277][biodb::testThat]
biodb.INFO [2025-08-09 16:04:40.278][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-08-09 16:04:40.279][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-09 16:04:40.280][biodb::testThat]
biodb.TRACE[2025-08-09 16:04:40.284][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:04:40.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:04:40.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.289][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:04:40.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:04:40.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.294][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:04:40.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:04:40.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:40.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:40.362][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:40.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:40.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:40.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:40.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:40.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:40.383][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:40.387][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:04:40.388][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-08-09 16:04:40.390][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:04:40.392][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-08-09 16:04:40.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:40.396][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:40.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:40.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:40.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:40.406][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:40.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:40.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:40.424][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:40.427][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:04:40.429][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-08-09 16:04:40.431][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:04:40.433][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-08-09 16:04:40.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:40.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:40.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:40.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:40.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:40.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:40.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:40.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:40.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:40.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:40.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:40.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:40.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:40.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:40.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:40.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:40.493][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:04:40.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:40.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:40.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:40.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:40.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:40.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:40.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:40.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.518][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.519][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:40.520][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:40.521][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:40.522][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.523][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.525][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.527][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.528][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.529][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.532][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.533][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.534][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.537][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.539][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.540][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:40.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.556][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-08-09 16:04:40.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:40.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:40.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:40.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:40.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:40.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:40.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:40.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.581][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.582][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:40.583][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:40.584][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:40.585][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.587][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.588][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.590][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.591][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.593][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.595][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.596][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.597][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.598][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.600][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.602][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.603][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:40.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.619][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-09 16:04:40.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:40.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:40.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:40.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:40.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:40.632][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:40.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:40.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.644][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.645][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:40.646][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:40.647][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:40.648][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.649][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.651][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.653][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.654][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.655][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.658][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.659][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.660][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.661][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.662][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.665][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.666][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:40.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.682][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-08-09 16:04:40.683][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:04:40.684][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:04:40.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:40.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:40.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:40.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:40.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:40.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:40.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:40.702][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:40.706][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:04:40.707][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-08-09 16:04:40.709][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:04:40.711][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-08-09 16:04:40.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:40.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:40.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:40.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:40.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:40.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:40.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:40.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:40.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:40.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:40.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:40.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:40.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:40.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:40.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:40.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:40.772][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:40.775][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:04:40.777][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-08-09 16:04:40.778][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:04:40.781][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-08-09 16:04:40.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:40.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:40.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:40.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:40.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:40.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:40.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:40.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:40.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:40.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:40.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:40.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:40.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:40.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:40.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:40.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:40.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:40.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:40.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:40.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:40.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:40.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:40.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:40.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:40.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:40.874][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:04:40.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:40.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:40.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:40.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:40.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:40.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:40.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:40.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.899][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.900][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:40.901][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:40.902][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:40.904][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.905][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.906][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.908][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.909][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.911][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.913][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.914][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.915][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.916][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.918][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.920][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.921][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:40.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.937][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-09 16:04:40.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:40.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:40.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:40.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:40.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:40.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:40.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:40.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.962][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.963][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:40.964][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:40.965][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:40.966][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.968][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.969][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.971][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.972][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.974][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.976][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.977][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.979][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:40.980][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.981][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.983][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.985][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:40.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:40.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:40.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:40.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.001][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-09 16:04:41.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:41.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:41.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:41.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:41.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:41.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:41.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:41.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.025][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:41.027][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:41.028][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:41.029][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:41.030][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:41.031][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.033][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.035][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.036][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.037][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.039][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.041][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:41.042][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:41.043][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.044][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.047][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.048][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:41.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.064][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-09 16:04:41.065][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:04:41.066][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:04:41.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:41.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:41.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:41.077][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:41.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:41.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:41.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:41.084][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:41.087][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:04:41.089][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-08-09 16:04:41.091][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:04:41.093][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-08-09 16:04:41.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:41.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:41.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:41.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:41.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:41.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:41.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:41.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:41.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:41.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:41.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:41.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:41.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:41.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:41.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:41.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:41.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:41.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:41.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:41.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:41.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:41.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:41.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:41.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:41.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:41.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:41.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:41.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:41.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:41.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:41.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:41.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:41.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:41.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:41.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:41.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:41.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:41.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:41.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:41.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:41.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:41.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:41.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:41.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:41.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:41.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:41.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:41.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:41.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:41.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:41.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:41.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:41.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:41.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:41.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:41.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:41.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:41.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:41.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:41.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:41.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:41.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:41.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:41.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:41.332][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:41.336][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:04:41.337][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-08-09 16:04:41.339][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:04:41.341][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-08-09 16:04:41.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:41.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:41.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:41.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:41.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:41.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:41.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:41.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:41.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:41.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:41.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:41.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:41.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:41.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:41.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:41.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:41.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:41.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:41.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:41.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:41.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:41.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:41.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:41.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:41.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:41.428][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:04:41.430][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:41.431][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:41.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:41.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:41.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:41.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:41.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:41.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.454][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:41.455][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:41.456][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:41.457][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:41.458][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:41.460][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.461][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.463][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.464][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.466][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.468][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.469][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:41.470][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:41.471][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.473][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.475][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.476][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:41.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.492][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-09 16:04:41.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:41.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:41.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:41.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:41.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:41.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:41.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:41.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.517][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:41.518][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:41.519][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:41.520][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:41.522][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:41.523][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.524][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.526][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.528][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.529][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.531][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.532][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:41.533][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:41.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.538][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.539][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:41.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.555][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-08-09 16:04:41.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:41.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:41.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:41.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:41.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:41.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:41.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:41.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.580][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:41.581][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:41.582][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:41.583][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:41.584][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:41.585][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.587][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.589][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.590][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.591][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.594][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.595][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:41.596][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:41.597][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.599][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.601][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.602][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:41.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.618][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-08-09 16:04:41.619][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:04:41.620][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-09 16:04:41.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:41.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:41.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:41.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:41.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:41.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:41.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:41.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:41.732][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:41.735][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:04:41.737][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-08-09 16:04:41.738][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:04:41.741][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-08-09 16:04:41.744][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:41.748][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:04:41.749][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-08-09 16:04:41.751][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:04:41.753][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-08-09 16:04:41.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:41.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:41.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:41.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:41.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:41.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:41.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:41.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:41.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:41.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:41.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:41.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:41.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:41.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:41.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:41.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:41.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:41.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:41.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:41.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:41.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:41.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:41.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:41.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:41.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:41.840][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:04:41.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:41.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:41.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:41.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:41.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:41.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:41.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:41.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.865][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:41.866][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:41.867][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:41.868][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:41.870][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:41.871][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.872][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.874][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.875][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.877][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.879][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.880][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:41.881][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:41.883][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.884][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.886][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.887][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:41.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.903][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-09 16:04:41.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:41.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:41.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:41.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:41.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:41.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:41.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:41.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.928][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:41.929][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:41.930][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:41.931][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:41.932][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:41.933][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.935][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.937][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.938][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.939][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.942][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.943][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:41.944][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:41.945][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.946][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.949][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.950][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:41.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.966][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-09 16:04:41.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:41.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:41.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:41.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:41.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:41.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:41.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:41.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:41.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:41.990][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:41.992][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:41.993][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:41.994][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:41.995][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:41.996][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.997][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:41.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.000][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.001][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.002][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.004][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.006][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:42.007][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:42.008][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.009][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.012][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.013][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:42.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.029][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-09 16:04:42.030][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:04:42.031][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:04:42.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:42.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:42.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:42.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:42.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:42.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:42.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:42.049][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:42.052][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:04:42.054][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-08-09 16:04:42.055][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:04:42.058][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-08-09 16:04:42.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:42.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:42.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:42.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:42.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:42.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:42.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:42.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:42.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:42.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:42.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:42.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:42.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:42.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:42.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:42.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:42.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:42.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:42.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:42.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:42.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:42.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:42.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:42.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:42.163][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:04:42.165][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:42.166][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:42.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:42.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:42.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:42.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:42.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:42.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.187][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:42.189][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:42.190][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:42.191][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:42.192][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:42.193][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.194][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.197][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.198][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.199][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.201][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.203][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:42.204][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:42.205][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.206][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.208][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.210][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:42.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.225][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-09 16:04:42.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:42.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:42.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:42.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:42.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:42.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:42.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:42.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.250][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:42.251][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:42.253][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:42.254][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:42.255][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:42.256][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.257][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.260][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.261][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.262][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.264][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.265][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:42.267][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:42.268][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.269][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.271][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.272][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:42.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.288][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-08-09 16:04:42.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:42.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:42.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:42.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:42.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:42.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:42.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:42.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.313][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:42.314][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:42.315][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:42.316][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:42.318][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:42.319][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.320][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.322][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.324][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.325][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.327][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.328][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:42.329][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:42.331][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.332][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.334][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.335][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:42.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.351][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-08-09 16:04:42.352][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:04:42.354][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:04:42.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:42.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:42.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:42.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:42.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:42.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:42.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:42.371][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:42.375][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:04:42.376][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-08-09 16:04:42.378][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:04:42.380][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-08-09 16:04:42.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:42.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:42.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:42.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:42.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:42.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:42.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:42.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:42.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:42.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:42.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:42.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:42.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:42.423][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:42.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:42.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:42.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:42.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:42.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:42.450][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:42.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:42.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:42.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:42.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:42.469][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:04:42.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:42.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:42.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:42.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:42.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:42.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:42.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:42.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.494][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:42.495][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:42.497][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:42.498][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:42.499][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:42.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.501][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.504][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.505][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.506][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.508][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.510][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:42.511][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:42.512][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.513][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.515][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.517][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:42.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.539][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-08-09 16:04:42.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:42.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:42.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:42.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:42.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:42.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:42.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:42.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.563][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:42.565][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:42.566][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:42.567][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:42.568][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:42.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.570][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.573][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.574][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.575][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.577][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.579][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:42.580][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:42.581][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.582][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.584][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.585][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:42.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.601][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-08-09 16:04:42.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:42.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:42.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:42.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:42.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:42.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:42.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:42.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.626][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:42.627][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:42.628][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:42.629][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:42.630][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:42.632][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.633][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.635][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.636][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.640][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.641][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:42.642][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:42.643][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.645][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.647][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.648][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:42.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:42.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.664][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-08-09 16:04:42.665][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:04:42.667][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-09 16:04:42.693][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:04:42.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:04:42.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.699][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:04:42.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:04:42.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.703][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:04:42.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:04:42.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.714][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:42.715][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:42.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.717][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.719][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.720][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:42.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.722][ef$get] fields variable is a list.
biodb.INFO [2025-08-09 16:04:42.724][biodb::testThat]
biodb.INFO [2025-08-09 16:04:42.726][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-08-09 16:04:42.727][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-09 16:04:42.728][biodb::testThat]
biodb.TRACE[2025-08-09 16:04:42.732][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:04:42.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:04:42.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.737][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:04:42.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:04:42.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.741][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:04:42.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:04:42.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:42.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:42.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:42.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:42.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:42.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:42.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:42.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:42.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:42.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:42.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:42.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:42.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:42.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:42.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:42.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:42.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:42.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:42.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:42.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:42.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:42.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:42.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:42.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:42.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:42.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:42.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:42.808][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:42.809][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:42.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:42.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:42.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:42.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:42.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:42.823][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:42.827][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:42.828][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:42.830][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-08-09 16:04:43.118][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-08-09 16:04:43.501][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:43.504][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content"
biodb.TRACE[2025-08-09 16:04:43.509][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.request"
biodb.DEBUG[2025-08-09 16:04:43.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:43.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:43.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:43.525][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:43.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:43.527][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:43.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:43.530][private$loadEntries] Creating entries from ids [1]: "3014".
biodb.DEBUG[2025-08-09 16:04:43.531][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:43.533][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3014".
biodb.TRACE[2025-08-09 16:04:43.535][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:43.536][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:43.538][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:43.539][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:43.540][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:43.541][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:43.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:43.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:43.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:43.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:43.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:43.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:43.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:43.559][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.DEBUG[2025-08-09 16:04:43.562][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:43.563][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:43.565][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.TRACE[2025-08-09 16:04:43.858][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014).
biodb.DEBUG[2025-08-09 16:04:44.169][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:44.172][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.content"
biodb.TRACE[2025-08-09 16:04:44.176][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.request"
biodb.TRACE[2025-08-09 16:04:44.180][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3014.xml"
biodb.DEBUG[2025-08-09 16:04:44.182][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:44.184][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:44.185][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:44.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:44.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:44.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:44.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:44.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:44.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:44.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:44.203][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:44.205][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:44.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.207][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:44.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:44.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.213][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:44.215][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:44.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.217][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.219][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:44.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:44.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.224][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:44.225][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:44.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.227][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.229][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:44.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:44.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.251][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:44.252][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:44.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.255][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:44.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:44.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.261][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:44.263][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:44.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.265][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:44.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:44.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.271][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:44.273][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:44.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.275][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.277][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:44.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:44.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.282][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:44.283][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:44.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.285][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.287][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:44.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:44.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.292][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:44.293][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:44.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.295][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:44.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:44.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.302][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:44.303][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:44.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.305][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.307][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:44.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:44.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.312][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:44.313][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:44.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.315][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.317][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:44.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:44.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.322][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:44.323][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:44.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.325][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.327][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:44.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:44.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:44.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:44.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:44.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:44.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:44.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:44.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:44.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:44.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:44.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:44.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:44.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:44.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:44.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:44.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:44.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:44.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:44.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:44.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:44.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:44.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:44.380][self$createEntryFromContent] Accession numbers: 3014.
biodb.TRACE[2025-08-09 16:04:44.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:44.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:44.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:44.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:44.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:44.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:44.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:44.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:44.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:44.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:44.396][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:44.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:44.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:44.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:44.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:44.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:44.409][private$loadEntries] Creating entries from ids [1]: "7567".
biodb.DEBUG[2025-08-09 16:04:44.411][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:44.412][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7567".
biodb.TRACE[2025-08-09 16:04:44.414][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:44.415][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:44.417][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:44.418][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:44.419][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:44.421][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:44.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:44.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:44.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:44.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:44.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:44.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:44.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:44.437][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.DEBUG[2025-08-09 16:04:44.441][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:44.442][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:44.443][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.TRACE[2025-08-09 16:04:44.730][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567).
biodb.DEBUG[2025-08-09 16:04:45.028][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:45.031][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.content"
biodb.TRACE[2025-08-09 16:04:45.036][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.request"
biodb.TRACE[2025-08-09 16:04:45.039][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7567.xml"
biodb.DEBUG[2025-08-09 16:04:45.042][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:45.043][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:45.044][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:45.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:45.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:45.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:45.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:45.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:45.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:45.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:45.061][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:45.063][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:45.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.065][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:45.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:45.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.071][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:45.073][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:45.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.075][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.076][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:45.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:45.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.081][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:45.083][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:45.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.085][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.086][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:45.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:45.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.091][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:45.092][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:45.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.095][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.097][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:45.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:45.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.104][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:45.106][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:45.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.109][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.111][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:45.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:45.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.118][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:45.119][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:45.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.122][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.123][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:45.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:45.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.128][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:45.130][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:45.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.132][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.133][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:45.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:45.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.138][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:45.140][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:45.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.142][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:45.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:45.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.148][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:45.150][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:45.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.152][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.154][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:45.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:45.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.159][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:45.160][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:45.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.162][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.164][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:45.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:45.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.168][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:45.170][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:45.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.172][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.173][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:45.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:45.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:45.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:45.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:45.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:45.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:45.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:45.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:45.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:45.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:45.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:45.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:45.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:45.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:45.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:45.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:45.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:45.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:45.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:45.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:45.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:45.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:45.226][self$createEntryFromContent] Accession numbers: 7567.
biodb.TRACE[2025-08-09 16:04:45.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:45.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:45.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:45.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:45.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:45.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:45.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:45.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:45.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:45.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:45.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:45.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:45.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:45.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:45.264][private$loadEntries] Creating entries from ids [1]: "8021".
biodb.DEBUG[2025-08-09 16:04:45.265][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:45.268][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8021".
biodb.TRACE[2025-08-09 16:04:45.269][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:45.271][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:45.272][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:45.273][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:45.274][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:45.276][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:45.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:45.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:45.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:45.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:45.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:45.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:45.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:45.292][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.DEBUG[2025-08-09 16:04:45.295][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:45.296][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:45.298][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.TRACE[2025-08-09 16:04:45.585][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021).
biodb.DEBUG[2025-08-09 16:04:45.891][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:45.893][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.content"
biodb.TRACE[2025-08-09 16:04:45.898][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.request"
biodb.TRACE[2025-08-09 16:04:45.901][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8021.xml"
biodb.DEBUG[2025-08-09 16:04:45.903][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:45.905][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:45.906][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:45.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:45.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:45.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:45.917][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:45.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:45.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:45.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:45.923][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:45.924][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:45.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.927][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:45.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:45.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.933][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:45.934][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:45.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.937][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.938][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:45.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:45.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.943][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:45.944][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:45.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.946][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.948][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:45.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:45.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.953][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:45.954][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:45.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.956][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:45.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:45.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.963][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:45.964][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:45.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.966][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:45.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:45.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.972][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:45.974][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:45.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.976][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.977][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:45.979][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:45.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.981][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.982][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:45.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:45.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.987][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:45.989][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:45.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.991][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:45.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:45.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:45.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:45.997][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:45.999][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:46.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.001][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.002][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:46.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:46.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.007][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:46.009][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:46.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.011][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.012][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:46.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:46.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.017][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:46.019][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:46.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.021][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.022][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:46.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:46.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:46.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:46.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:46.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:46.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:46.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:46.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:46.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:46.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:46.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:46.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:46.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:46.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:46.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:46.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:46.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:46.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:46.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:46.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:46.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:46.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:46.076][self$createEntryFromContent] Accession numbers: 8021.
biodb.TRACE[2025-08-09 16:04:46.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:46.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:46.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:46.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:46.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.086][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:46.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:46.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:46.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:46.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:46.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:46.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:46.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:46.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:46.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:46.107][private$loadEntries] Creating entries from ids [1]: "30382".
biodb.DEBUG[2025-08-09 16:04:46.108][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:46.110][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30382".
biodb.TRACE[2025-08-09 16:04:46.111][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:46.113][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:46.114][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:46.115][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:46.117][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:46.118][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:46.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:46.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:46.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:46.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:46.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:46.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:46.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:46.134][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.DEBUG[2025-08-09 16:04:46.138][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:46.139][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:46.140][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.TRACE[2025-08-09 16:04:46.426][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382).
biodb.DEBUG[2025-08-09 16:04:46.709][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:46.712][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.content"
biodb.TRACE[2025-08-09 16:04:46.717][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.request"
biodb.TRACE[2025-08-09 16:04:46.720][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30382.xml"
biodb.DEBUG[2025-08-09 16:04:46.722][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:46.724][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:46.725][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:46.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:46.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:46.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:46.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:46.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:46.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:46.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:46.742][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:46.743][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:46.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.745][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:46.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:46.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.752][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:46.753][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:46.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.755][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.757][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:46.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:46.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.762][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:46.763][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:46.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.765][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.767][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:46.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:46.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.772][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:46.773][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:46.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.775][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.777][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:46.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:46.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.782][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:46.783][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:46.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.785][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:46.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:46.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.792][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:46.793][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:46.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.795][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.797][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:46.798][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:46.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.800][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.802][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:46.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:46.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.807][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:46.808][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:46.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.810][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:46.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:46.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.817][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:46.818][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:46.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.820][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.822][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:46.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:46.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.827][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:46.828][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:46.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.830][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.832][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:46.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:46.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.837][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:46.838][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:46.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.849][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.851][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:46.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:46.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:46.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:46.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:46.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:46.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:46.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:46.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:46.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:46.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:46.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:46.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:46.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:46.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:46.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:46.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:46.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:46.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:46.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:46.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:46.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:46.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:46.905][self$createEntryFromContent] Accession numbers: 30382.
biodb.TRACE[2025-08-09 16:04:46.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:46.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:46.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:46.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:46.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:46.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:46.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:46.920][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:04:46.922][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:46.923][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:46.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:46.932][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:46.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:46.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:46.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:46.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:46.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:46.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:46.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:46.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.947][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:46.948][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:46.949][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:46.950][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:46.951][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:46.952][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:46.954][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:46.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.956][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.957][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:46.958][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:46.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.961][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.962][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:46.963][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:46.964][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:46.966][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:46.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.968][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.969][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:46.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:46.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:46.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:46.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:46.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:46.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:46.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:46.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:46.985][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-08-09 16:04:46.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:46.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:46.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:46.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:46.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:46.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:46.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:47.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:47.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:47.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:47.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:47.010][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:47.011][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:47.012][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:47.013][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:47.014][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:47.016][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.017][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:47.019][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:47.020][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.022][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:47.024][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:47.025][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:47.026][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:47.028][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.029][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:47.031][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:47.032][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:47.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:47.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:47.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:47.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:47.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:47.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:47.048][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2025-08-09 16:04:47.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:47.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:47.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:47.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:47.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:47.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:47.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:47.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:47.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:47.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:47.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:47.073][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:47.074][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:47.076][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:47.077][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:47.078][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:47.079][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.080][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:47.083][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:47.084][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.085][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:47.087][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:47.088][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:47.090][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:47.091][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.092][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:47.094][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:47.096][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:47.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:47.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:47.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:47.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:47.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:47.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:47.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:47.112][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2025-08-09 16:04:47.114][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:04:47.115][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:04:47.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:47.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:47.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:47.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:47.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:47.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:47.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:47.133][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:47.137][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:47.138][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:47.140][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-08-09 16:04:47.426][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-08-09 16:04:47.721][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:47.724][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content"
biodb.TRACE[2025-08-09 16:04:47.728][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.request"
biodb.DEBUG[2025-08-09 16:04:47.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:47.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:47.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:47.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:47.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:47.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:47.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:47.746][private$loadEntries] Creating entries from ids [1]: "9710".
biodb.DEBUG[2025-08-09 16:04:47.748][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:47.749][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9710".
biodb.TRACE[2025-08-09 16:04:47.751][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:47.752][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:47.754][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:47.755][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:47.756][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:47.757][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:47.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:47.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:47.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:47.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:47.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:47.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:47.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:47.774][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.DEBUG[2025-08-09 16:04:47.777][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:47.778][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:47.780][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.TRACE[2025-08-09 16:04:48.069][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710).
biodb.DEBUG[2025-08-09 16:04:48.361][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:48.364][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.content"
biodb.TRACE[2025-08-09 16:04:48.368][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.request"
biodb.TRACE[2025-08-09 16:04:48.371][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9710.xml"
biodb.DEBUG[2025-08-09 16:04:48.373][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:48.375][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:48.376][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:48.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:48.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:48.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:48.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:48.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:48.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:48.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:48.393][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:48.394][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:48.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.397][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:48.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:48.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.403][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:48.404][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:48.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.407][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.408][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:48.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:48.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.413][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:48.414][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:48.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.416][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.418][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:48.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:48.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.423][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:48.424][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:48.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.436][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:48.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:48.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.443][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:48.444][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:48.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.446][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:48.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:48.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.453][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:48.454][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:48.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.456][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.458][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:48.459][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:48.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.461][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.462][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:48.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:48.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.467][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:48.469][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:48.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.471][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:48.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:48.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.477][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:48.478][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:48.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.480][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.482][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:48.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:48.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.487][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:48.488][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:48.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.490][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.492][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:48.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:48.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.497][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:48.498][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:48.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.500][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.501][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:48.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:48.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:48.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:48.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:48.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:48.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:48.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:48.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:48.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:48.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:48.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:48.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:48.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:48.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:48.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:48.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:48.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:48.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:48.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:48.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:48.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:48.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:48.554][self$createEntryFromContent] Accession numbers: 9710.
biodb.TRACE[2025-08-09 16:04:48.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:48.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:48.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:48.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:48.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:48.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:48.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:48.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:48.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:48.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:48.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:48.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:48.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:48.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:48.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:48.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:48.583][private$loadEntries] Creating entries from ids [1]: "65530".
biodb.DEBUG[2025-08-09 16:04:48.584][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:48.586][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65530".
biodb.TRACE[2025-08-09 16:04:48.587][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:48.588][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:48.590][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:48.591][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:48.592][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:48.593][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:48.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:48.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:48.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:48.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:48.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:48.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:48.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:48.610][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.DEBUG[2025-08-09 16:04:48.614][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:48.615][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:48.616][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.TRACE[2025-08-09 16:04:48.904][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530).
biodb.DEBUG[2025-08-09 16:04:49.200][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:49.202][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.content"
biodb.TRACE[2025-08-09 16:04:49.207][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.request"
biodb.TRACE[2025-08-09 16:04:49.210][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65530.xml"
biodb.DEBUG[2025-08-09 16:04:49.212][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:49.213][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:49.215][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:49.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:49.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:49.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:49.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:49.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:49.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:49.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:49.232][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:49.233][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:49.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.235][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:49.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:49.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.242][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:49.243][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:49.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.245][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.247][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:49.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:49.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.252][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:49.253][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:49.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.255][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.257][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:49.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:49.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.261][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:49.263][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:49.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.265][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:49.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:49.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.271][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:49.273][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:49.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.275][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.277][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:49.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:49.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.282][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:49.283][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:49.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.285][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.287][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:49.288][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:49.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.290][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.292][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:49.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:49.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.297][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:49.298][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:49.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.300][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:49.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:49.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.307][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:49.308][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:49.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.310][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.312][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:49.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:49.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.317][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:49.318][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:49.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.320][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.322][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:49.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:49.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.327][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:49.328][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:49.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.330][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.332][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:49.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:49.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:49.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:49.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:49.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:49.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:49.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:49.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:49.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:49.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:49.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:49.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:49.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:49.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:49.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:49.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:49.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:49.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:49.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:49.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:49.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:49.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:49.385][self$createEntryFromContent] Accession numbers: 65530.
biodb.TRACE[2025-08-09 16:04:49.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:49.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:49.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:49.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:49.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:49.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:49.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:49.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:49.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:49.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:49.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:49.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:49.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:49.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:49.412][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:49.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:49.414][private$loadEntries] Creating entries from ids [1]: "72338".
biodb.DEBUG[2025-08-09 16:04:49.416][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:49.418][cch$loadFileContent] Trying to load 1 files from cache: [1]: "72338".
biodb.TRACE[2025-08-09 16:04:49.419][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:49.421][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:49.422][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:49.423][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:49.424][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:49.426][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:49.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:49.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:49.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:49.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:49.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:49.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:49.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:49.452][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.DEBUG[2025-08-09 16:04:49.455][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:49.456][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:49.458][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.TRACE[2025-08-09 16:04:49.744][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338).
biodb.DEBUG[2025-08-09 16:04:50.021][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:50.024][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.content"
biodb.TRACE[2025-08-09 16:04:50.029][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.request"
biodb.TRACE[2025-08-09 16:04:50.032][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/72338.xml"
biodb.DEBUG[2025-08-09 16:04:50.034][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:50.036][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:50.037][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:50.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:50.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:50.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:50.048][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:50.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:50.050][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:50.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:50.054][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:50.055][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:50.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.057][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:50.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:50.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.064][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:50.065][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:50.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.067][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.069][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:50.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:50.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.074][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:50.075][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:50.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.077][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.079][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:50.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:50.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.084][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:50.085][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:50.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.087][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:50.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:50.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.095][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:50.096][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:50.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.098][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.100][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:50.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:50.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.104][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:50.106][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:50.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.108][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.109][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:50.111][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:50.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.113][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.114][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:50.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:50.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.119][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:50.120][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:50.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.123][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:50.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:50.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.129][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:50.130][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:50.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.132][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.134][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:50.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:50.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.139][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:50.140][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:50.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.142][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.144][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:50.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:50.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.149][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:50.150][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:50.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.152][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.154][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:50.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:50.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:50.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:50.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:50.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:50.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:50.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:50.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:50.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:50.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:50.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:50.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:50.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:50.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:50.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:50.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:50.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:50.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:50.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:50.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:50.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:50.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:50.207][self$createEntryFromContent] Accession numbers: 72338.
biodb.TRACE[2025-08-09 16:04:50.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:50.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:50.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:50.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:50.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:50.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:50.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:50.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:50.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:50.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:50.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:50.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:50.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:50.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:50.236][private$loadEntries] Creating entries from ids [1]: "77926".
biodb.DEBUG[2025-08-09 16:04:50.237][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:50.239][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77926".
biodb.TRACE[2025-08-09 16:04:50.241][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:50.242][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:50.243][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:50.245][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:50.246][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:50.247][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:50.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:50.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:50.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:50.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:50.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:50.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:50.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:50.264][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.DEBUG[2025-08-09 16:04:50.267][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:50.268][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:50.270][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.TRACE[2025-08-09 16:04:50.556][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926).
biodb.DEBUG[2025-08-09 16:04:50.844][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:50.847][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.content"
biodb.TRACE[2025-08-09 16:04:50.851][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.request"
biodb.TRACE[2025-08-09 16:04:50.855][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77926.xml"
biodb.DEBUG[2025-08-09 16:04:50.857][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:50.858][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:50.860][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:50.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:50.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:50.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:50.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:50.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:50.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:50.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:50.877][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:50.878][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:50.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.880][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:50.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:50.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.887][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:50.888][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:50.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.890][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.892][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:50.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:50.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.896][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:50.898][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:50.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.900][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.901][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:50.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:50.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.906][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:50.908][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:50.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.910][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.911][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:50.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:50.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.916][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:50.918][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:50.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.920][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:50.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:50.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.926][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:50.927][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:50.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.930][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.931][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:50.932][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:50.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.935][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.936][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:50.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:50.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.941][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:50.942][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:50.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.945][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:50.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:50.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.951][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:50.952][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:50.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.954][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.956][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:50.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:50.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.961][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:50.962][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:50.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.964][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.966][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:50.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:50.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.971][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:50.972][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:50.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.974][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.976][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:50.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:50.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:50.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:50.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:50.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:50.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:50.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:50.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:51.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:51.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:51.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:51.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:51.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:51.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:51.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:51.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:51.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:51.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:51.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:51.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:51.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:51.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:51.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:51.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:51.041][self$createEntryFromContent] Accession numbers: 77926.
biodb.TRACE[2025-08-09 16:04:51.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:51.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:51.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:51.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:51.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:51.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:51.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:51.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:51.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:51.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:51.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:51.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:51.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:51.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:51.071][private$loadEntries] Creating entries from ids [1]: "82369".
biodb.DEBUG[2025-08-09 16:04:51.072][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:51.074][cch$loadFileContent] Trying to load 1 files from cache: [1]: "82369".
biodb.TRACE[2025-08-09 16:04:51.075][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:51.077][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:51.078][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:51.079][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:51.080][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:51.082][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:51.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:51.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:51.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:51.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:51.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:51.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:51.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:51.101][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.DEBUG[2025-08-09 16:04:51.106][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:51.107][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:51.109][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.TRACE[2025-08-09 16:04:51.407][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369).
biodb.DEBUG[2025-08-09 16:04:51.703][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:51.706][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.content"
biodb.TRACE[2025-08-09 16:04:51.711][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.request"
biodb.TRACE[2025-08-09 16:04:51.715][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/82369.xml"
biodb.DEBUG[2025-08-09 16:04:51.717][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:51.718][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:51.720][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:51.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:51.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:51.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:51.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:51.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:51.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:51.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:51.737][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:51.738][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:51.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.740][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:51.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:51.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.746][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:51.748][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:51.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.750][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.751][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:51.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:51.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.756][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:51.758][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:51.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.760][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.761][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:51.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:51.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.766][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:51.768][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:51.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.770][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.771][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:51.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:51.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.776][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:51.778][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:51.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.780][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:51.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:51.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.786][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:51.787][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:51.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.790][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.791][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:51.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:51.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.796][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:51.797][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:51.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.800][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.801][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:51.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:51.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.806][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:51.807][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:51.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.809][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:51.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:51.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.816][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:51.817][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:51.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.819][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.821][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:51.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:51.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.826][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:51.827][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:51.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.829][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.831][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:51.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:51.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.836][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:51.837][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:51.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.839][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.841][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:51.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:51.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:51.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:51.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:51.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:51.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:51.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:51.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:51.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:51.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:51.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:51.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:51.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:51.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:51.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:51.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:51.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:51.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:51.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:51.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:51.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:51.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:51.894][self$createEntryFromContent] Accession numbers: 82369.
biodb.TRACE[2025-08-09 16:04:51.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:51.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:51.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:51.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:51.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:51.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:51.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:51.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:51.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:51.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:51.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:51.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:51.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:51.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:51.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:51.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:51.924][private$loadEntries] Creating entries from ids [1]: "90204".
biodb.DEBUG[2025-08-09 16:04:51.925][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:51.927][cch$loadFileContent] Trying to load 1 files from cache: [1]: "90204".
biodb.TRACE[2025-08-09 16:04:51.929][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:51.930][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:51.932][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:51.933][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:51.934][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:51.935][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:51.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:51.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:51.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:51.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:51.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:51.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:51.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:51.952][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.DEBUG[2025-08-09 16:04:51.955][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:51.957][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:51.958][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.TRACE[2025-08-09 16:04:52.257][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204).
biodb.DEBUG[2025-08-09 16:04:52.547][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:52.550][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.content"
biodb.TRACE[2025-08-09 16:04:52.554][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.request"
biodb.TRACE[2025-08-09 16:04:52.558][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90204.xml"
biodb.DEBUG[2025-08-09 16:04:52.560][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:52.561][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:52.563][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:52.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:52.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:52.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:52.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:52.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:52.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:52.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:52.580][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:52.582][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:52.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.584][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:52.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:52.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.590][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:52.592][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:52.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.594][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.596][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:52.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:52.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.601][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:52.612][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:52.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.615][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.617][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:52.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:52.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.622][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:52.623][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:52.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.625][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:52.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:52.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.632][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:52.633][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:52.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.635][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:52.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:52.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.642][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:52.643][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:52.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.645][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.647][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:52.648][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:52.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.650][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.652][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:52.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:52.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.657][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:52.658][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:52.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.660][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:52.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:52.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.667][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:52.668][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:52.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.670][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.672][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:52.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:52.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.677][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:52.678][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:52.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.680][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.682][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:52.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:52.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.687][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:52.688][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:52.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.690][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.692][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:52.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:52.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:52.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:52.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:52.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:52.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:52.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:52.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:52.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:52.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:52.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:52.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:52.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:52.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:52.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:52.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:52.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:52.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:52.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:52.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:52.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:52.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:52.745][self$createEntryFromContent] Accession numbers: 90204.
biodb.TRACE[2025-08-09 16:04:52.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:52.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:52.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:52.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:52.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:52.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:52.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:52.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:52.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:52.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:52.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:52.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:52.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:52.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:52.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:52.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:52.775][private$loadEntries] Creating entries from ids [1]: "132793".
biodb.DEBUG[2025-08-09 16:04:52.776][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:52.778][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132793".
biodb.TRACE[2025-08-09 16:04:52.780][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:52.781][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:52.783][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:52.784][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:52.785][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:52.786][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:52.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:52.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:52.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:52.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:52.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:52.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:52.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:52.803][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.DEBUG[2025-08-09 16:04:52.806][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:52.807][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:52.809][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.TRACE[2025-08-09 16:04:53.104][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793).
biodb.DEBUG[2025-08-09 16:04:53.397][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:53.400][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.content"
biodb.TRACE[2025-08-09 16:04:53.404][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.request"
biodb.TRACE[2025-08-09 16:04:53.408][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132793.xml"
biodb.DEBUG[2025-08-09 16:04:53.410][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:53.411][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:53.413][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:53.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:53.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:53.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:53.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:53.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:53.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:53.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:53.430][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:53.431][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:53.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.433][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:53.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:53.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.439][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:53.441][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:53.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.443][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.444][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:53.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:53.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.449][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:53.450][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:53.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.453][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.454][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:53.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:53.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.459][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:53.460][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:53.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.463][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.464][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:53.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:53.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.469][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:53.470][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:53.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.472][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.474][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:53.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:53.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.479][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:53.480][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:53.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.482][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.484][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:53.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:53.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.489][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:53.490][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:53.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.492][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.494][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:53.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:53.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.498][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:53.500][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:53.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.502][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:53.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:53.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.508][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:53.510][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:53.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.512][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.514][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:53.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:53.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.518][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:53.520][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:53.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.522][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.524][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:53.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:53.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.528][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:53.530][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:53.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.532][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:53.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:53.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:53.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:53.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:53.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:53.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:53.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:53.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:53.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:53.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:53.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:53.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:53.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:53.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:53.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:53.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:53.586][self$createEntryFromContent] Accession numbers: 132793.
biodb.TRACE[2025-08-09 16:04:53.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:53.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:53.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:53.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:53.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:53.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:53.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:53.602][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:04:53.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:53.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:53.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:53.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:53.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:53.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:53.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:53.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.636][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:53.638][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:53.639][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:53.640][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:53.641][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:53.642][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.643][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.646][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.647][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.648][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.650][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.652][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:53.653][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:53.654][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.655][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.657][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.658][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:53.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.674][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2025-08-09 16:04:53.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:53.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:53.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:53.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:53.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:53.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:53.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:53.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.699][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:53.700][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:53.701][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:53.702][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:53.704][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:53.705][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.706][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.708][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.709][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.711][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.713][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.714][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:53.715][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:53.716][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.718][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.720][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.721][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:53.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.737][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2025-08-09 16:04:53.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:53.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:53.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:53.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:53.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:53.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:53.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:53.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.761][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:53.762][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:53.764][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:53.765][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:53.766][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:53.767][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.768][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.771][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.772][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.773][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.775][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.776][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:53.778][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:53.779][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.780][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.782][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.784][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:53.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:53.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:53.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:53.800][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2025-08-09 16:04:53.801][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:04:53.802][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:04:53.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:53.805][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:53.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:53.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:53.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:53.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:53.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:53.820][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:53.823][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:53.825][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:53.827][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-08-09 16:04:54.126][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-08-09 16:04:54.408][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:54.411][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content"
biodb.TRACE[2025-08-09 16:04:54.416][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.request"
biodb.DEBUG[2025-08-09 16:04:54.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:54.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:54.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:54.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:54.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:54.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:54.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:54.433][private$loadEntries] Creating entries from ids [1]: "131378".
biodb.DEBUG[2025-08-09 16:04:54.435][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:54.437][cch$loadFileContent] Trying to load 1 files from cache: [1]: "131378".
biodb.TRACE[2025-08-09 16:04:54.438][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:54.440][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:54.441][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:54.442][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:54.443][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:54.445][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:54.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:54.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:54.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:54.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:54.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:54.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:54.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:54.461][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.DEBUG[2025-08-09 16:04:54.464][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:54.466][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:54.467][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.TRACE[2025-08-09 16:04:54.753][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378).
biodb.DEBUG[2025-08-09 16:04:55.035][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:55.038][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.content"
biodb.TRACE[2025-08-09 16:04:55.042][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.request"
biodb.TRACE[2025-08-09 16:04:55.045][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/131378.xml"
biodb.DEBUG[2025-08-09 16:04:55.047][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:55.049][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:55.050][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:55.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:55.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:55.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:55.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:55.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:55.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:55.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:55.067][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:55.069][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:55.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.071][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:55.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:55.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.077][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:55.079][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:55.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.081][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.082][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:55.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:55.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.087][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:55.089][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:55.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.091][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.093][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:55.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:55.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.098][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:55.099][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:55.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.101][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.103][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:55.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:55.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.108][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:55.109][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:55.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.111][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:55.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:55.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.118][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:55.119][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:55.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.121][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.123][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:55.124][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:55.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.127][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.128][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:55.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:55.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.133][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:55.134][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:55.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.137][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:55.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:55.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.143][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:55.144][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:55.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.147][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.148][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:55.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:55.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.153][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:55.154][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:55.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.157][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.158][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:55.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:55.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.163][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:55.164][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:55.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.167][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.168][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:55.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:55.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:55.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:55.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:55.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:55.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:55.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:55.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:55.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:55.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:55.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:55.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:55.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:55.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:55.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:55.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:55.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:55.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:55.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:55.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:55.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:55.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:55.234][self$createEntryFromContent] Accession numbers: 131378.
biodb.TRACE[2025-08-09 16:04:55.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:55.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:55.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:55.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:55.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:55.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:55.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:55.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:55.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:55.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:55.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:55.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:55.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:55.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:55.265][private$loadEntries] Creating entries from ids [1]: "214202".
biodb.DEBUG[2025-08-09 16:04:55.266][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:55.268][cch$loadFileContent] Trying to load 1 files from cache: [1]: "214202".
biodb.TRACE[2025-08-09 16:04:55.270][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:55.271][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:55.272][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:55.274][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:55.275][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:55.276][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:55.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:55.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:55.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:55.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:55.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:55.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:55.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:55.293][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
biodb.DEBUG[2025-08-09 16:04:55.296][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:55.298][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:55.299][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
biodb.TRACE[2025-08-09 16:04:55.594][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202).
biodb.DEBUG[2025-08-09 16:04:55.873][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:55.876][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf9a3fb7c59af59e06fd510ceb170574.content"
biodb.TRACE[2025-08-09 16:04:55.880][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf9a3fb7c59af59e06fd510ceb170574.request"
biodb.TRACE[2025-08-09 16:04:55.883][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/214202.xml"
biodb.DEBUG[2025-08-09 16:04:55.885][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:55.887][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:55.888][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:55.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:55.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:55.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:55.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:55.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:55.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:55.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:55.905][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:55.906][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:55.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.909][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:55.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:55.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.915][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:55.916][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:55.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.918][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.920][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:55.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:55.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.925][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:55.926][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:55.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.928][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.930][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:55.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:55.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.935][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:55.936][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:55.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.939][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:55.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:55.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.945][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:55.946][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:55.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.949][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:55.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:55.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.955][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:55.956][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:55.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.959][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.960][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:55.961][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:55.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.964][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.965][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:55.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:55.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.970][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:55.971][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:55.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.974][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:55.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:55.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.980][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:55.981][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:55.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.984][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.985][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:55.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:55.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.990][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:55.991][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:55.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.994][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:55.995][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:55.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:55.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:55.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:56.000][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:56.001][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:56.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:56.004][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:56.005][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:56.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:56.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:56.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:56.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:56.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:56.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:56.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:56.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:56.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:56.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:56.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:56.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:56.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:56.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:56.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:56.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:56.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:56.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:56.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:56.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:56.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:56.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:56.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:56.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:56.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:56.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:56.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:56.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:56.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:56.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:56.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:56.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:56.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:56.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:56.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:56.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:56.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:56.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:56.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:56.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:56.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:56.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:56.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:56.058][self$createEntryFromContent] Accession numbers: 214202.
biodb.TRACE[2025-08-09 16:04:56.059][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:56.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:56.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:56.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:56.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:56.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:56.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:56.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:56.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:56.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:56.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:56.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:56.075][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:56.078][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:56.080][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:56.082][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-08-09 16:04:56.364][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-08-09 16:04:56.645][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:56.648][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content"
biodb.TRACE[2025-08-09 16:04:56.653][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.request"
biodb.DEBUG[2025-08-09 16:04:56.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:56.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:56.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:56.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:56.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:56.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:56.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:56.670][private$loadEntries] Creating entries from ids [1]: "51836".
biodb.DEBUG[2025-08-09 16:04:56.672][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:56.674][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51836".
biodb.TRACE[2025-08-09 16:04:56.675][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:56.677][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:56.678][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:56.679][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:56.680][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:56.682][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:56.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:56.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:56.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:56.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:56.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:56.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:56.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:56.698][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.DEBUG[2025-08-09 16:04:56.701][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:56.703][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:56.704][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.TRACE[2025-08-09 16:04:56.996][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836).
biodb.DEBUG[2025-08-09 16:04:57.276][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:57.279][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.content"
biodb.TRACE[2025-08-09 16:04:57.284][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.request"
biodb.TRACE[2025-08-09 16:04:57.287][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51836.xml"
biodb.DEBUG[2025-08-09 16:04:57.289][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:57.291][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:57.292][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:57.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:57.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:57.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:57.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:57.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:57.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:57.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:57.309][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:57.311][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:57.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.324][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:57.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:57.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.332][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:57.333][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:57.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.335][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.337][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:57.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:57.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.342][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:57.343][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:57.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.345][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.347][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:57.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:57.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.352][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:57.353][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:57.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.355][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:57.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:57.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.362][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:57.363][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:57.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.365][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:57.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:57.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.372][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:57.373][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:57.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.375][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.377][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:57.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:57.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.381][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:57.383][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:57.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.385][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.386][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:57.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:57.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.391][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:57.393][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:57.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.395][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:57.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:57.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.401][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:57.402][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:57.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.405][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.406][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:57.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:57.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.411][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:57.412][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:57.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.415][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.416][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:57.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:57.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.421][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:57.422][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:57.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.425][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.426][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:57.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:57.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:57.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:57.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:57.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:57.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:57.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:57.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:57.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:57.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:57.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:57.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:57.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:57.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:57.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:57.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:57.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:57.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:57.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:57.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:57.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:57.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:57.480][self$createEntryFromContent] Accession numbers: 51836.
biodb.TRACE[2025-08-09 16:04:57.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:57.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:57.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:57.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:57.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:57.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:57.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:57.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:57.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:57.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:57.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:57.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:57.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:57.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:57.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:57.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:57.510][private$loadEntries] Creating entries from ids [1]: "51837".
biodb.DEBUG[2025-08-09 16:04:57.511][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:57.513][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51837".
biodb.TRACE[2025-08-09 16:04:57.515][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:57.516][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:57.518][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:57.519][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:57.520][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:57.521][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:57.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:57.525][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:57.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:57.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:57.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:57.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:57.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:57.538][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.DEBUG[2025-08-09 16:04:57.541][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:57.543][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:57.544][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.TRACE[2025-08-09 16:04:57.841][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837).
biodb.DEBUG[2025-08-09 16:04:58.124][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:58.127][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.content"
biodb.TRACE[2025-08-09 16:04:58.131][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.request"
biodb.TRACE[2025-08-09 16:04:58.135][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51837.xml"
biodb.DEBUG[2025-08-09 16:04:58.137][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:58.139][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:58.141][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:58.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:58.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:58.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:58.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:58.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:58.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:58.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:58.158][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:58.159][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:58.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.161][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:58.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:58.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.168][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:58.169][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:58.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.171][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.173][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:58.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:58.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.178][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:58.179][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:58.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.181][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.183][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:58.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:58.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.188][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:58.189][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:58.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.191][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:58.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:58.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.198][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:58.199][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:58.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.201][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.203][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:58.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:58.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.208][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:58.209][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:58.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.211][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.213][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:58.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:58.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.218][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:58.219][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:58.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.221][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.223][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:58.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:58.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.228][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:58.229][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:58.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.231][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:58.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:58.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.238][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:58.239][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:58.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.241][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.243][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:58.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:58.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.248][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:58.249][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:58.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.251][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.253][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:58.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:58.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.258][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:58.259][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:58.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.261][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.263][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:58.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:58.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:58.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:58.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:58.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:58.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:58.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:58.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:58.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:58.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:58.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:58.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:58.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:58.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:58.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:58.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:58.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:58.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:58.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:58.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:58.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:58.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:58.325][self$createEntryFromContent] Accession numbers: 51837.
biodb.TRACE[2025-08-09 16:04:58.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:58.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:58.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:58.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:58.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:58.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:58.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:58.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:58.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:58.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:58.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:58.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:58.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:58.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:58.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:58.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:58.356][private$loadEntries] Creating entries from ids [1]: "132205".
biodb.DEBUG[2025-08-09 16:04:58.357][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:04:58.359][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132205".
biodb.TRACE[2025-08-09 16:04:58.361][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:04:58.362][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:04:58.363][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:04:58.365][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:04:58.366][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:04:58.367][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:04:58.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:58.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:58.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:58.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:58.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:58.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:58.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:58.384][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.DEBUG[2025-08-09 16:04:58.387][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:04:58.388][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:04:58.390][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.TRACE[2025-08-09 16:04:58.685][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205).
biodb.DEBUG[2025-08-09 16:04:58.967][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:04:58.970][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.content"
biodb.TRACE[2025-08-09 16:04:58.975][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.request"
biodb.TRACE[2025-08-09 16:04:58.979][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132205.xml"
biodb.DEBUG[2025-08-09 16:04:58.981][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:04:58.983][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:04:58.984][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:04:58.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:58.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:58.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:58.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:58.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:58.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:58.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:59.001][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:59.002][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:59.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.004][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:59.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:59.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.011][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:59.012][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:59.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.014][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.016][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:04:59.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:04:59.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.021][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:59.022][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:59.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.024][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.026][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:04:59.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:04:59.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.031][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:59.032][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:59.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.034][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.036][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:04:59.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:04:59.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.041][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:59.042][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:59.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.044][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.046][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:04:59.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:04:59.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.050][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:59.052][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:04:59.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.054][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.055][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:59.057][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.059][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.060][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:04:59.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.065][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:59.067][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:59.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.069][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:59.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:04:59.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.075][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:59.077][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:59.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.079][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.081][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:04:59.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:04:59.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.086][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:59.087][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:59.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.089][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.091][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:04:59.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:04:59.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.096][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:59.097][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:59.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.101][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.103][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:04:59.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:04:59.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:59.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:59.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:59.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:59.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:59.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:59.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:59.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:59.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:59.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:59.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:59.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:59.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:04:59.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:04:59.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:59.168][self$createEntryFromContent] Accession numbers: 132205.
biodb.TRACE[2025-08-09 16:04:59.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:59.184][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:04:59.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:59.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:59.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:59.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:59.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:59.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:59.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:59.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.210][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:59.211][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:59.212][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:59.213][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:59.214][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:59.215][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.217][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.219][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.220][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.221][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.224][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.225][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:59.226][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:59.227][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.229][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.231][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.232][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:59.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.248][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2025-08-09 16:04:59.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:59.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:59.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:59.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:59.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:59.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:59.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:59.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.273][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:59.274][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:59.275][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:59.276][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:59.278][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:59.279][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.280][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.282][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.284][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.285][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.287][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.288][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:59.290][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:59.291][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.292][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.294][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.295][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:59.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.311][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2025-08-09 16:04:59.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:59.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:59.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:59.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:59.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:59.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:59.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:59.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.346][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:59.347][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:59.349][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:59.350][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:59.351][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:59.352][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.353][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.356][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.357][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.358][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.360][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.362][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:59.363][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:59.364][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.365][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.368][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.369][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:59.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.385][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2025-08-09 16:04:59.386][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:04:59.387][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:04:59.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:59.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:59.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:59.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:59.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:59.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:59.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:59.431][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:59.434][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:04:59.436][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-08-09 16:04:59.438][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:04:59.440][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-08-09 16:04:59.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:59.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:59.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:59.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:59.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:59.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:59.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:59.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:59.473][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:59.476][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:04:59.478][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-08-09 16:04:59.479][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:04:59.482][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-08-09 16:04:59.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:59.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:59.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:59.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:59.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:59.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:59.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:59.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:59.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:59.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:59.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:59.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:59.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:59.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:59.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:59.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:59.543][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:04:59.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:59.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:59.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:59.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:59.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:59.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:59.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:59.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.569][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:59.570][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:59.571][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:59.572][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:59.574][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:59.575][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.576][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.578][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.580][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.581][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.583][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.585][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:59.586][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:59.587][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.588][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.591][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.592][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:59.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.608][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-08-09 16:04:59.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:59.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:59.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:59.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:59.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:59.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:59.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:59.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.634][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:59.635][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:59.636][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:59.637][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:59.638][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:59.640][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.641][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.645][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.647][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.649][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.653][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.655][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:59.657][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:59.659][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.661][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.665][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.666][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:59.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.682][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-09 16:04:59.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:59.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:59.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:59.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:59.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:59.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:59.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:59.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.707][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:59.709][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:59.710][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:59.711][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:59.712][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:59.713][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.715][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.717][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.718][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.719][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.722][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.723][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:59.724][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:59.725][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.727][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.729][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.730][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:59.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.746][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-08-09 16:04:59.747][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:04:59.749][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:04:59.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:59.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:59.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:59.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:59.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:59.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:59.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:04:59.767][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:59.770][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:04:59.772][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-08-09 16:04:59.773][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:04:59.776][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-08-09 16:04:59.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:59.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:59.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:59.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:59.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:59.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:59.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:59.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:59.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:59.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:59.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:59.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:59.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:59.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:59.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:59.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:59.845][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:04:59.848][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:04:59.850][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-08-09 16:04:59.852][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:04:59.854][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-08-09 16:04:59.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:59.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:59.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:59.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:59.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:59.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:59.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:59.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:59.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:59.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:59.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:59.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:59.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:59.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:59.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:59.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:59.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:59.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:59.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:59.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:59.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:59.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:59.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:59.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:04:59.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:04:59.943][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:04:59.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:04:59.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:04:59.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:04:59.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:04:59.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:04:59.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:04:59.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:04:59.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.968][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:59.969][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:04:59.971][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:04:59.972][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:04:59.973][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:59.974][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.975][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.978][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.979][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.980][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.982][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.984][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:59.985][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:04:59.986][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.987][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.990][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.991][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:04:59.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:04:59.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:04:59.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:04:59.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.008][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-09 16:05:00.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:00.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:00.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:00.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:00.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:00.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:00.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:00.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.033][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:00.034][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:00.035][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:00.036][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:00.038][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:00.039][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.040][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.042][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.044][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.045][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.047][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.048][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:00.049][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:00.051][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.052][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.054][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.055][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:00.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.072][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-09 16:05:00.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:00.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:00.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:00.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:00.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:00.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:00.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:00.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.097][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:00.098][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:00.100][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:00.102][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:00.103][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:00.105][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.106][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.108][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.110][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.111][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.113][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.114][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:00.116][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:00.117][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.118][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.120][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.122][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:00.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.138][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-09 16:05:00.139][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:05:00.140][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:05:00.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:00.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:00.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:00.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:00.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:00.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:00.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:00.158][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:05:00.162][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:05:00.164][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-08-09 16:05:00.165][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:05:00.168][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-08-09 16:05:00.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:00.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:00.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:00.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:00.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:00.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:00.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:00.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:00.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:00.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:00.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:00.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:00.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:00.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:00.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:00.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:00.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:00.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:00.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:00.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:00.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:00.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:00.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:00.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:00.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:00.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:00.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:00.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:00.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:00.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:00.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:00.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:00.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:00.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:00.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:00.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:00.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:00.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:00.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:00.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:00.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:00.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:00.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:00.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:00.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:00.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:00.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:00.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:00.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:00.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:00.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:00.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:00.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:00.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:00.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:00.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:00.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:00.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:00.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:00.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:00.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:00.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:00.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:00.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:00.409][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:05:00.413][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:05:00.414][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-08-09 16:05:00.416][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:05:00.418][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-08-09 16:05:00.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:00.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:00.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:00.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:00.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:00.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:00.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:00.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:00.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:00.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:00.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:00.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:00.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:00.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:00.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:00.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:00.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:00.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:00.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:00.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:00.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:00.489][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:00.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:00.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:00.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:00.507][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:05:00.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:00.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:00.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:00.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:00.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:00.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:00.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:00.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.532][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:00.534][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:00.535][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:00.536][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:00.537][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:00.538][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.540][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.542][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.543][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.544][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.547][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.548][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:00.549][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:00.550][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.551][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.554][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.555][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:00.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.571][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-09 16:05:00.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:00.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:00.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:00.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:00.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:00.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:00.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:00.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.596][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:00.597][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:00.598][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:00.600][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:00.601][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:00.602][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.603][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.606][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.607][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.608][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.610][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.612][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:00.613][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:00.614][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.615][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.618][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.619][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:00.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.635][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-08-09 16:05:00.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:00.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:00.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:00.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:00.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:00.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:00.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:00.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.668][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:00.669][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:00.671][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:00.672][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:00.673][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:00.674][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.676][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.678][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.679][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.680][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.683][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.684][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:00.685][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:00.686][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.688][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.690][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.691][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:00.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:00.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:00.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:00.707][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-08-09 16:05:00.708][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:05:00.710][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:05:00.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:00.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:00.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:00.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:00.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:00.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:00.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:00.753][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:05:00.756][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:00.758][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:00.760][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-08-09 16:05:01.045][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-08-09 16:05:01.340][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:01.343][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content"
biodb.TRACE[2025-08-09 16:05:01.349][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.request"
biodb.DEBUG[2025-08-09 16:05:01.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:01.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:01.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:01.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:01.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:01.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:01.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:01.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:01.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:01.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:01.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:01.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:01.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:01.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:01.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:01.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:01.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:01.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:01.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:01.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:01.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:01.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:01.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:01.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:01.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:01.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:01.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:01.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:01.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:01.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:01.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:01.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:01.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:01.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:01.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:01.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:01.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:01.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:01.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:01.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:01.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:01.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:01.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:01.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:01.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:01.431][private$loadEntries] Creating entries from ids [1]: "28243".
biodb.DEBUG[2025-08-09 16:05:01.433][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:01.435][cch$loadFileContent] Trying to load 1 files from cache: [1]: "28243".
biodb.TRACE[2025-08-09 16:05:01.436][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:01.438][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:01.440][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:01.441][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:01.442][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:01.444][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:01.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:01.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:01.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:01.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:01.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:01.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:01.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:01.463][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.DEBUG[2025-08-09 16:05:01.466][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:01.468][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:01.470][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.TRACE[2025-08-09 16:05:01.763][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243).
biodb.DEBUG[2025-08-09 16:05:02.057][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:02.059][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.content"
biodb.TRACE[2025-08-09 16:05:02.064][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.request"
biodb.TRACE[2025-08-09 16:05:02.067][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/28243.xml"
biodb.DEBUG[2025-08-09 16:05:02.070][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:02.071][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:02.073][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:02.075][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:02.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:02.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:02.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:02.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:02.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:02.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:02.091][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:02.093][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:02.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.096][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:02.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:02.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.102][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:02.104][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:02.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.106][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.107][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:02.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:02.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.112][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:02.114][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:02.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.116][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.117][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:02.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:02.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.122][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:02.124][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:02.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.126][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:02.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:02.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.132][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:02.134][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:02.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.136][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.138][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:02.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:02.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.143][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:02.144][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:02.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.146][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.148][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:02.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:02.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.153][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:02.154][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:02.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.156][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.158][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:02.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:02.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.163][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:02.164][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:02.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.166][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:02.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:02.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.173][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:02.174][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:02.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.176][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.178][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:02.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:02.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.183][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:02.184][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:02.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.186][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.188][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:02.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:02.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.193][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:02.194][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:02.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.196][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.198][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:02.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:02.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:02.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:02.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:02.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:02.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:02.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:02.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:02.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:02.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:02.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:02.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:02.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:02.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:02.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:02.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:02.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:02.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:02.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:02.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:02.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:02.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:02.251][self$createEntryFromContent] Accession numbers: 28243.
biodb.TRACE[2025-08-09 16:05:02.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:02.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:02.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:02.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:02.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:02.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:02.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:02.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:02.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:02.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:02.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:02.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:02.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:02.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:02.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:02.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:02.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:02.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:02.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:02.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:02.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:02.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:02.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:02.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:02.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:02.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:02.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:02.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:02.321][private$loadEntries] Creating entries from ids [1]: "70786".
biodb.DEBUG[2025-08-09 16:05:02.322][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:02.324][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70786".
biodb.TRACE[2025-08-09 16:05:02.325][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:02.327][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:02.328][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:02.329][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:02.331][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:02.332][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:02.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:02.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:02.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:02.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:02.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:02.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:02.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:02.348][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.DEBUG[2025-08-09 16:05:02.351][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:02.353][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:02.354][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.TRACE[2025-08-09 16:05:02.644][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786).
biodb.DEBUG[2025-08-09 16:05:02.930][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:02.933][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.content"
biodb.TRACE[2025-08-09 16:05:02.937][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.request"
biodb.TRACE[2025-08-09 16:05:02.941][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70786.xml"
biodb.DEBUG[2025-08-09 16:05:02.943][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:02.944][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:02.946][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:02.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:02.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:02.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:02.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:02.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:02.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:02.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:02.963][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:02.964][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:02.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.966][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:02.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:02.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.973][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:02.974][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:02.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.976][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.978][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:02.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:02.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.982][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:02.984][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:02.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.986][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.987][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:02.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:02.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.992][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:02.994][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:02.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:02.996][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:02.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:02.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:03.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.002][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:03.003][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:03.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.006][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:03.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:03.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.012][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:03.014][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:03.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.016][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.017][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:03.019][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:03.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.021][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.022][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:03.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:03.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.028][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:03.029][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:03.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.031][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:03.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:03.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.038][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:03.039][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:03.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.041][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.043][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:03.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:03.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.048][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:03.049][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:03.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.051][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.053][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:03.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:03.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.058][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:03.059][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:03.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.061][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.063][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:03.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:03.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:03.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:03.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:03.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:03.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:03.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:03.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:03.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:03.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:03.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:03.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:03.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:03.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:03.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:03.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:03.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:03.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:03.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:03.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:03.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:03.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:03.117][self$createEntryFromContent] Accession numbers: 70786.
biodb.TRACE[2025-08-09 16:05:03.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:03.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:03.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:03.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:03.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:03.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:03.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:03.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:03.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:03.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:03.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:03.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:03.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:03.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:03.146][private$loadEntries] Creating entries from ids [1]: "78144".
biodb.DEBUG[2025-08-09 16:05:03.148][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:03.149][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78144".
biodb.TRACE[2025-08-09 16:05:03.151][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:03.153][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:03.154][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:03.155][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:03.156][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:03.157][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:03.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:03.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:03.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:03.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:03.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:03.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:03.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:03.174][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.DEBUG[2025-08-09 16:05:03.178][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:03.179][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:03.180][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.TRACE[2025-08-09 16:05:03.462][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144).
biodb.DEBUG[2025-08-09 16:05:03.742][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:03.745][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.content"
biodb.TRACE[2025-08-09 16:05:03.749][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.request"
biodb.TRACE[2025-08-09 16:05:03.753][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78144.xml"
biodb.DEBUG[2025-08-09 16:05:03.755][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:03.757][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:03.758][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:03.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:03.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:03.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:03.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:03.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:03.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:03.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:03.776][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:03.777][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:03.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.779][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:03.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:03.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.786][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:03.787][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:03.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.790][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.791][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:03.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:03.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.796][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:03.797][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:03.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.800][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.801][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:03.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:03.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.806][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:03.808][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:03.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.810][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.812][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:03.813][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:03.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.815][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.817][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:03.818][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:03.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.820][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.822][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:03.823][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:03.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.825][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.827][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:03.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:03.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.843][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:03.844][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:03.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.847][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:03.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:03.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.853][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:03.854][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:03.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.857][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.858][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:03.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:03.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.863][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:03.864][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:03.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.867][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.868][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:03.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:03.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.873][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:03.874][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:03.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.877][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.878][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:03.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:03.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:03.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:03.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:03.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:03.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:03.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:03.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:03.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:03.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:03.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:03.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:03.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:03.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:03.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:03.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:03.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:03.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:03.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:03.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:03.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:03.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:03.931][self$createEntryFromContent] Accession numbers: 78144.
biodb.TRACE[2025-08-09 16:05:03.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:03.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:03.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:03.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:03.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:03.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:03.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:03.947][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:05:03.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:03.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:03.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:03.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:03.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:03.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:03.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:03.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:03.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:03.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:03.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:03.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.973][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:03.974][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:03.975][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:03.976][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:03.977][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:03.979][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:03.980][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:03.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.982][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.983][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:03.985][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:03.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.987][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.988][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:03.989][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:03.990][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:03.992][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:03.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:03.994][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:03.995][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:03.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:03.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:03.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.012][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-09 16:05:04.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:04.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:04.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:04.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:04.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:04.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:04.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:04.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.037][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:04.038][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:04.039][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:04.040][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:04.041][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:04.042][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.044][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.046][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.047][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.048][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.051][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.052][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:04.053][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:04.054][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.055][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.058][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.059][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:04.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.075][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2025-08-09 16:05:04.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:04.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:04.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:04.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:04.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:04.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:04.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:04.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.102][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:04.103][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:04.104][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:04.105][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:04.106][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:04.107][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.109][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.111][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.112][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.113][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.116][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.117][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:04.118][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:04.119][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.121][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.123][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.124][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:04.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.140][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2025-08-09 16:05:04.141][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:05:04.143][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:05:04.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:04.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:04.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:04.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:04.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:04.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:04.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:04.161][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:05:04.164][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:04.165][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:04.168][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-08-09 16:05:04.451][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-08-09 16:05:04.822][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:04.825][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content"
biodb.TRACE[2025-08-09 16:05:04.830][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.request"
biodb.DEBUG[2025-08-09 16:05:04.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:04.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:04.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:04.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:04.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:04.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:04.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:04.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:04.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:04.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:04.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:04.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:04.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:04.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:04.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:04.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:04.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:04.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:04.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:04.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:04.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:04.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:04.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:04.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:04.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:04.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:04.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:04.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:04.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:04.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:04.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:04.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:04.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:04.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:04.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:04.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:04.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:04.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:04.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:04.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:04.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:04.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:04.933][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:05:04.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:04.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:04.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:04.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:04.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:04.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:04.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:04.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.958][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:04.960][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:04.961][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:04.962][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:04.963][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:04.964][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.965][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.968][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.969][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.970][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.972][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.973][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:04.975][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:04.976][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.977][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.979][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.980][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:04.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:04.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:04.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:04.996][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-09 16:05:04.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:04.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:05.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:05.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:05.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:05.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:05.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:05.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:05.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:05.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:05.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:05.021][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:05.022][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:05.023][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:05.025][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:05.026][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:05.027][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.028][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:05.031][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:05.032][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.033][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:05.035][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:05.036][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:05.038][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:05.039][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.040][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:05.042][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:05.044][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:05.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:05.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:05.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:05.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:05.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:05.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:05.060][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-09 16:05:05.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:05.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:05.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:05.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:05.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:05.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:05.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:05.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:05.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:05.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:05.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:05.085][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:05.086][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:05.087][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:05.088][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:05.089][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:05.091][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.092][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:05.095][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:05.097][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.099][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:05.102][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:05.103][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:05.104][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:05.106][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.107][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:05.109][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:05.110][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:05.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:05.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:05.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:05.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:05.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:05.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:05.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:05.126][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-09 16:05:05.128][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:05:05.129][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:05:05.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:05.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:05.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:05.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:05.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:05.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:05.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:05.147][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:05:05.151][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:05.152][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:05.154][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-08-09 16:05:05.437][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-08-09 16:05:05.722][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:05.725][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content"
biodb.TRACE[2025-08-09 16:05:05.730][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.request"
biodb.DEBUG[2025-08-09 16:05:05.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:05.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:05.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:05.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:05.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:05.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:05.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:05.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:05.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:05.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:05.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:05.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:05.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:05.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:05.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:05.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:05.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:05.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:05.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:05.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:05.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:05.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:05.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:05.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:05.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:05.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:05.778][private$loadEntries] Creating entries from ids [1]: "47739".
biodb.DEBUG[2025-08-09 16:05:05.779][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:05.781][cch$loadFileContent] Trying to load 1 files from cache: [1]: "47739".
biodb.TRACE[2025-08-09 16:05:05.783][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:05.784][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:05.785][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:05.787][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:05.788][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:05.789][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:05.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:05.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:05.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:05.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:05.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:05.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:05.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:05.806][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.DEBUG[2025-08-09 16:05:05.809][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:05.810][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:05.812][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.TRACE[2025-08-09 16:05:06.098][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739).
biodb.DEBUG[2025-08-09 16:05:06.380][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:06.383][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.content"
biodb.TRACE[2025-08-09 16:05:06.388][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.request"
biodb.TRACE[2025-08-09 16:05:06.391][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/47739.xml"
biodb.DEBUG[2025-08-09 16:05:06.394][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:06.395][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:06.397][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:06.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:06.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:06.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:06.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:06.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:06.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:06.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:06.414][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:06.415][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:06.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.417][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:06.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:06.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.424][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:06.425][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:06.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.428][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.429][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:06.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:06.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.434][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:06.435][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:06.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.438][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.439][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:06.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:06.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.444][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:06.445][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:06.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.448][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:06.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:06.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.454][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:06.455][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:06.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.458][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.459][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:06.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:06.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.464][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:06.465][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:06.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.468][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.479][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:06.481][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:06.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.484][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.486][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:06.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:06.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.491][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:06.492][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:06.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.494][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:06.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:06.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.501][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:06.502][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:06.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.504][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.506][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:06.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:06.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.511][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:06.512][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:06.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.514][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.516][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:06.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:06.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.521][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:06.522][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:06.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.524][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.526][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:06.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:06.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:06.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:06.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:06.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:06.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:06.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:06.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:06.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:06.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:06.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:06.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:06.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:06.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:06.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:06.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:06.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:06.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:06.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:06.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:06.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:06.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:06.579][self$createEntryFromContent] Accession numbers: 47739.
biodb.TRACE[2025-08-09 16:05:06.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:06.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:06.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:06.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:06.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:06.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:06.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:06.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:06.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:06.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:06.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:06.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:06.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:06.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:06.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:06.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:06.609][private$loadEntries] Creating entries from ids [1]: "51744".
biodb.DEBUG[2025-08-09 16:05:06.610][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:06.612][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51744".
biodb.TRACE[2025-08-09 16:05:06.614][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:06.615][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:06.617][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:06.618][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:06.619][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:06.620][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:06.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:06.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:06.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:06.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:06.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:06.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:06.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:06.637][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.DEBUG[2025-08-09 16:05:06.641][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:06.642][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:06.643][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.TRACE[2025-08-09 16:05:06.933][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744).
biodb.DEBUG[2025-08-09 16:05:07.214][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:07.217][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.content"
biodb.TRACE[2025-08-09 16:05:07.221][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.request"
biodb.TRACE[2025-08-09 16:05:07.225][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51744.xml"
biodb.DEBUG[2025-08-09 16:05:07.227][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:07.228][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:07.230][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:07.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:07.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:07.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:07.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:07.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:07.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:07.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:07.247][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:07.248][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:07.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.250][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:07.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:07.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.257][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:07.258][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:07.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.260][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.262][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:07.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:07.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.267][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:07.268][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:07.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.270][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.272][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:07.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:07.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.277][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:07.278][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:07.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.280][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:07.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:07.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.287][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:07.288][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:07.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.290][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:07.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:07.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.296][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:07.298][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:07.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.300][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.301][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:07.303][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:07.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.305][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.306][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:07.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:07.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.311][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:07.313][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:07.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.315][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:07.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:07.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.321][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:07.323][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:07.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.325][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.326][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:07.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:07.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.331][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:07.333][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:07.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.335][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.336][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:07.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:07.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.341][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:07.343][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:07.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.345][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.346][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:07.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:07.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:07.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:07.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:07.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:07.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:07.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:07.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:07.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:07.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:07.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:07.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:07.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:07.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:07.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:07.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:07.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:07.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:07.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:07.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:07.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:07.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:07.400][self$createEntryFromContent] Accession numbers: 51744.
biodb.TRACE[2025-08-09 16:05:07.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:07.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:07.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:07.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:07.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:07.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:07.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:07.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:07.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:07.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:07.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:07.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:07.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:07.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:07.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:07.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:07.430][private$loadEntries] Creating entries from ids [1]: "64473".
biodb.DEBUG[2025-08-09 16:05:07.431][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:07.433][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64473".
biodb.TRACE[2025-08-09 16:05:07.435][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:07.436][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:07.437][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:07.439][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:07.440][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:07.441][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:07.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:07.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:07.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:07.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:07.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:07.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:07.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:07.459][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.DEBUG[2025-08-09 16:05:07.468][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:07.472][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:07.474][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.TRACE[2025-08-09 16:05:07.764][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473).
biodb.DEBUG[2025-08-09 16:05:08.051][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:08.054][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.content"
biodb.TRACE[2025-08-09 16:05:08.058][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.request"
biodb.TRACE[2025-08-09 16:05:08.062][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64473.xml"
biodb.DEBUG[2025-08-09 16:05:08.064][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:08.066][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:08.067][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:08.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:08.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:08.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:08.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:08.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:08.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:08.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:08.085][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:08.086][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:08.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.088][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:08.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:08.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.095][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:08.096][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:08.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.099][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.100][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:08.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:08.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.107][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:08.110][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:08.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.113][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.115][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:08.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:08.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.120][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:08.121][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:08.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.123][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:08.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:08.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.130][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:08.131][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:08.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.133][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.135][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:08.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:08.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.140][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:08.141][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:08.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.143][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.144][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:08.146][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:08.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.148][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.149][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:08.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:08.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.154][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:08.155][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:08.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.158][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:08.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:08.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.164][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:08.165][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:08.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.168][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.169][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:08.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:08.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.174][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:08.175][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:08.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.177][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.179][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:08.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:08.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.184][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:08.185][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:08.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.187][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.189][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:08.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:08.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:08.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:08.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:08.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:08.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:08.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:08.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:08.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:08.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:08.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:08.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:08.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:08.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:08.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:08.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:08.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:08.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:08.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:08.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:08.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:08.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:08.243][self$createEntryFromContent] Accession numbers: 64473.
biodb.TRACE[2025-08-09 16:05:08.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:08.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:08.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:08.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:08.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:08.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:08.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:08.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:08.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:08.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:08.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:08.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:08.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:08.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:08.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:08.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:08.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:08.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:08.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:08.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:08.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:08.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:08.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:08.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:08.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:08.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:08.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:08.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:08.300][private$loadEntries] Creating entries from ids [1]: "75244".
biodb.DEBUG[2025-08-09 16:05:08.302][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:08.303][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75244".
biodb.TRACE[2025-08-09 16:05:08.305][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:08.307][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:08.308][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:08.309][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:08.310][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:08.311][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:08.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:08.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:08.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:08.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:08.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:08.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:08.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:08.328][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.DEBUG[2025-08-09 16:05:08.332][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:08.333][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:08.334][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.TRACE[2025-08-09 16:05:08.634][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244).
biodb.DEBUG[2025-08-09 16:05:08.926][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:08.929][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.content"
biodb.TRACE[2025-08-09 16:05:08.933][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.request"
biodb.TRACE[2025-08-09 16:05:08.937][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75244.xml"
biodb.DEBUG[2025-08-09 16:05:08.939][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:08.940][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:08.942][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:08.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:08.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:08.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:08.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:08.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:08.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:08.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:08.959][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:08.960][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:08.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.962][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:08.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:08.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.969][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:08.970][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:08.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.972][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.974][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:08.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:08.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.979][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:08.980][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:08.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.982][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.984][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:08.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:08.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.989][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:08.990][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:08.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.993][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:08.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:08.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:08.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:08.999][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:09.000][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:09.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.003][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:09.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:09.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.009][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:09.010][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:09.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.012][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.014][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:09.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:09.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.019][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:09.020][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:09.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.022][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.024][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:09.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:09.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.029][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:09.030][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:09.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.032][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:09.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:09.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.039][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:09.040][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:09.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.042][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.044][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:09.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:09.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.049][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:09.050][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:09.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.052][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.063][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:09.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:09.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.070][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:09.071][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:09.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.073][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.075][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:09.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:09.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:09.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:09.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:09.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:09.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:09.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:09.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:09.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:09.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:09.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:09.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:09.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:09.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:09.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:09.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:09.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:09.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:09.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:09.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:09.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:09.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:09.129][self$createEntryFromContent] Accession numbers: 75244.
biodb.TRACE[2025-08-09 16:05:09.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:09.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:09.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:09.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:09.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:09.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:09.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:09.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:09.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:09.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:09.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:09.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:09.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:09.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:09.158][private$loadEntries] Creating entries from ids [1]: "75311".
biodb.DEBUG[2025-08-09 16:05:09.159][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:09.161][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75311".
biodb.TRACE[2025-08-09 16:05:09.163][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:09.164][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:09.166][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:09.167][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:09.168][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:09.169][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:09.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:09.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:09.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:09.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:09.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:09.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:09.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:09.186][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.DEBUG[2025-08-09 16:05:09.189][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:09.191][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:09.192][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.TRACE[2025-08-09 16:05:09.480][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311).
biodb.DEBUG[2025-08-09 16:05:09.767][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:09.770][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.content"
biodb.TRACE[2025-08-09 16:05:09.774][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.request"
biodb.TRACE[2025-08-09 16:05:09.778][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75311.xml"
biodb.DEBUG[2025-08-09 16:05:09.780][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:09.781][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:09.783][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:09.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:09.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:09.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:09.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:09.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:09.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:09.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:09.800][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:09.801][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:09.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.804][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:09.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:09.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.810][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:09.811][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:09.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.814][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.815][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:09.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:09.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.820][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:09.821][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:09.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.824][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.825][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:09.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:09.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.830][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:09.831][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:09.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.834][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:09.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:09.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.840][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:09.841][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:09.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.843][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:09.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:09.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.850][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:09.851][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:09.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.853][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.855][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:09.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:09.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.860][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:09.861][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:09.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.863][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.865][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:09.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:09.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.870][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:09.871][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:09.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.873][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:09.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:09.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.880][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:09.881][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:09.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.883][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.885][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:09.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:09.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.890][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:09.891][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:09.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.893][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.895][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:09.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:09.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.900][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:09.901][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:09.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.903][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.905][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:09.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:09.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:09.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:09.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:09.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:09.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:09.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:09.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:09.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:09.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:09.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:09.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:09.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:09.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:09.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:09.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:09.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:09.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:09.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:09.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:09.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:09.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:09.958][self$createEntryFromContent] Accession numbers: 75311.
biodb.TRACE[2025-08-09 16:05:09.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:09.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:09.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:09.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:09.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:09.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:09.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:09.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:09.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:09.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:09.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:09.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:09.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:09.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:09.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:09.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:09.987][private$loadEntries] Creating entries from ids [1]: "75350".
biodb.DEBUG[2025-08-09 16:05:09.989][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:09.990][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75350".
biodb.TRACE[2025-08-09 16:05:09.992][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:09.993][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:09.995][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:09.996][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:09.997][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:09.998][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:10.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:10.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:10.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:10.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:10.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:10.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:10.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:10.015][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.DEBUG[2025-08-09 16:05:10.018][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:10.019][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:10.021][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.TRACE[2025-08-09 16:05:10.308][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350).
biodb.DEBUG[2025-08-09 16:05:10.590][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:10.593][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.content"
biodb.TRACE[2025-08-09 16:05:10.597][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.request"
biodb.TRACE[2025-08-09 16:05:10.600][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75350.xml"
biodb.DEBUG[2025-08-09 16:05:10.602][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:10.604][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:10.605][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:10.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:10.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:10.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:10.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:10.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:10.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:10.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:10.652][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:10.654][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:10.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.656][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:10.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:10.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.662][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:10.664][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:10.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.666][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.667][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:10.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:10.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.672][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:10.673][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:10.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.676][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.677][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:10.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:10.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.682][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:10.683][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:10.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.686][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:10.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:10.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.692][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:10.693][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:10.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.696][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:10.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:10.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.702][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:10.703][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:10.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.706][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.707][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:10.708][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:10.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.711][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.712][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:10.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:10.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.717][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:10.718][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:10.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.720][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:10.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:10.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.727][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:10.728][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:10.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.730][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.732][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:10.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:10.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.737][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:10.738][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:10.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.740][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.742][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:10.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:10.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.747][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:10.748][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:10.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.750][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.752][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:10.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:10.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:10.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:10.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:10.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:10.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:10.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:10.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:10.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:10.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:10.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:10.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:10.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:10.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:10.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:10.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:10.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:10.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:10.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:10.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:10.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:10.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:10.805][self$createEntryFromContent] Accession numbers: 75350.
biodb.TRACE[2025-08-09 16:05:10.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:10.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:10.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:10.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:10.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:10.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:10.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:10.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:10.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:10.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:10.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:10.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:10.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:10.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:10.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:10.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:10.835][private$loadEntries] Creating entries from ids [1]: "87236".
biodb.DEBUG[2025-08-09 16:05:10.836][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:10.838][cch$loadFileContent] Trying to load 1 files from cache: [1]: "87236".
biodb.TRACE[2025-08-09 16:05:10.839][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:10.841][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:10.842][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:10.843][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:10.845][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:10.846][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:10.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:10.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:10.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:10.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:10.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:10.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:10.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:10.863][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.DEBUG[2025-08-09 16:05:10.866][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:10.867][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:10.869][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.TRACE[2025-08-09 16:05:11.157][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236).
biodb.DEBUG[2025-08-09 16:05:11.443][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:11.446][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.content"
biodb.TRACE[2025-08-09 16:05:11.450][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.request"
biodb.TRACE[2025-08-09 16:05:11.453][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/87236.xml"
biodb.DEBUG[2025-08-09 16:05:11.456][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:11.457][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:11.459][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:11.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:11.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:11.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:11.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:11.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:11.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:11.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:11.476][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:11.478][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:11.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.480][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:11.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:11.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.486][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:11.488][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:11.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.490][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.492][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:11.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:11.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.497][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:11.498][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:11.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.500][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.502][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:11.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:11.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.507][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:11.508][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:11.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.510][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:11.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:11.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.516][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:11.518][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:11.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.520][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:11.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:11.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.526][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:11.528][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:11.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.530][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.531][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:11.533][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:11.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.535][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.536][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:11.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:11.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.541][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:11.543][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:11.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.545][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:11.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:11.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.551][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:11.553][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:11.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.555][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.557][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:11.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:11.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.561][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:11.563][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:11.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.565][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.567][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:11.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:11.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.572][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:11.573][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:11.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.575][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.577][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:11.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:11.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:11.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:11.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:11.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:11.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:11.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:11.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:11.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:11.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:11.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:11.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:11.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:11.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:11.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:11.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:11.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:11.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:11.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:11.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:11.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:11.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:11.639][self$createEntryFromContent] Accession numbers: 87236.
biodb.TRACE[2025-08-09 16:05:11.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:11.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:11.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:11.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:11.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:11.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:11.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:11.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:11.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:11.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:11.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:11.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:11.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:11.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:11.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:11.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:11.669][private$loadEntries] Creating entries from ids [1]: "132193".
biodb.DEBUG[2025-08-09 16:05:11.671][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:11.672][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132193".
biodb.TRACE[2025-08-09 16:05:11.674][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:11.675][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:11.677][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:11.678][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:11.679][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:11.680][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:11.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:11.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:11.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:11.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:11.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:11.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:11.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:11.697][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.DEBUG[2025-08-09 16:05:11.700][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:11.701][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:11.703][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.TRACE[2025-08-09 16:05:11.991][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193).
biodb.DEBUG[2025-08-09 16:05:12.276][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:12.279][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.content"
biodb.TRACE[2025-08-09 16:05:12.284][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.request"
biodb.TRACE[2025-08-09 16:05:12.287][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132193.xml"
biodb.DEBUG[2025-08-09 16:05:12.289][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:12.291][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:12.292][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:12.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:12.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:12.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:12.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:12.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:12.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:12.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:12.310][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:12.311][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:12.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.313][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:12.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:12.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.320][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:12.321][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:12.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.323][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.325][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:12.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:12.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.330][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:12.331][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:12.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.333][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.335][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:12.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:12.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.339][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:12.341][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:12.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.343][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:12.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:12.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.350][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:12.351][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:12.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.353][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:12.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:12.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.360][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:12.361][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:12.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.363][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.365][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:12.366][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:12.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.369][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.370][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:12.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:12.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.375][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:12.376][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:12.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.379][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:12.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:12.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.385][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:12.386][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:12.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.389][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.390][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:12.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:12.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.395][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:12.397][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:12.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.399][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.400][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:12.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:12.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.405][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:12.407][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:12.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.409][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.410][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:12.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:12.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:12.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:12.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:12.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:12.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:12.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:12.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:12.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:12.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:12.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:12.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:12.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:12.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:12.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:12.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:12.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:12.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:12.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:12.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:12.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:12.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:12.464][self$createEntryFromContent] Accession numbers: 132193.
biodb.TRACE[2025-08-09 16:05:12.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:12.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:12.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:12.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:12.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:12.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:12.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:12.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:12.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:12.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:12.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:12.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:12.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:12.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:12.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:12.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:12.494][private$loadEntries] Creating entries from ids [1]: "146002".
biodb.DEBUG[2025-08-09 16:05:12.495][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:12.497][cch$loadFileContent] Trying to load 1 files from cache: [1]: "146002".
biodb.TRACE[2025-08-09 16:05:12.499][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:12.500][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:12.501][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:12.503][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:12.504][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:12.505][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:12.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:12.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:12.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:12.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:12.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:12.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:12.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:12.522][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.DEBUG[2025-08-09 16:05:12.526][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:12.527][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:12.528][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.TRACE[2025-08-09 16:05:12.814][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002).
biodb.DEBUG[2025-08-09 16:05:13.096][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:13.099][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.content"
biodb.TRACE[2025-08-09 16:05:13.104][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.request"
biodb.TRACE[2025-08-09 16:05:13.107][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/146002.xml"
biodb.DEBUG[2025-08-09 16:05:13.109][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:13.111][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:13.112][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:13.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:13.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:13.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:13.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:13.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:13.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:13.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:13.134][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:13.136][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:13.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.138][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:13.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:13.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.145][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:13.146][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:13.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.148][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.150][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:13.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:13.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.155][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:13.156][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:13.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.158][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.160][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:13.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:13.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.165][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:13.166][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:13.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.168][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:13.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:13.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.175][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:13.176][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:13.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.178][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:13.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:13.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.185][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:13.186][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:13.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.188][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.190][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:13.191][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:13.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.194][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.195][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:13.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:13.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.200][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:13.212][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:13.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.215][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:13.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:13.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.222][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:13.223][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:13.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.226][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.227][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:13.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:13.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.232][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:13.233][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:13.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.236][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.237][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:13.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:13.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.242][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:13.244][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:13.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.246][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.248][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:13.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:13.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:13.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:13.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:13.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:13.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:13.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:13.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:13.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:13.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:13.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:13.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:13.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:13.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:13.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:13.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:13.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:13.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:13.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:13.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:13.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:13.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:13.302][self$createEntryFromContent] Accession numbers: 146002.
biodb.TRACE[2025-08-09 16:05:13.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:13.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:13.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:13.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:13.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:13.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:13.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:13.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:13.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:13.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:13.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:13.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:13.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:13.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:13.332][private$loadEntries] Creating entries from ids [1]: "65641".
biodb.DEBUG[2025-08-09 16:05:13.333][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:13.335][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65641".
biodb.TRACE[2025-08-09 16:05:13.337][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:13.338][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:13.339][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:13.341][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:13.342][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:13.343][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:13.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:13.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:13.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:13.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:13.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:13.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:13.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:13.361][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.DEBUG[2025-08-09 16:05:13.364][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:13.365][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:13.367][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.TRACE[2025-08-09 16:05:13.654][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641).
biodb.DEBUG[2025-08-09 16:05:13.940][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:13.944][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.content"
biodb.TRACE[2025-08-09 16:05:13.949][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.request"
biodb.TRACE[2025-08-09 16:05:13.952][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65641.xml"
biodb.DEBUG[2025-08-09 16:05:13.954][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:13.956][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:13.957][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:13.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:13.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:13.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:13.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:13.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:13.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:13.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:13.975][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:13.976][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:13.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.978][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:13.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:13.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.985][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:13.986][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:13.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.988][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.990][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:13.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:13.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:13.995][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:13.996][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:13.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:13.998][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.000][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:14.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:14.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.004][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:14.006][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:14.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.008][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:14.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:14.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.014][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:14.016][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:14.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.018][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.019][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:14.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:14.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.024][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:14.025][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:14.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.028][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.029][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:14.030][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:14.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.033][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.034][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:14.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:14.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.039][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:14.040][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:14.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.043][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:14.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:14.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.049][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:14.051][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:14.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.053][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.054][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:14.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:14.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.059][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:14.061][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:14.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.063][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.064][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:14.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:14.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.069][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:14.071][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:14.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.073][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.074][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:14.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:14.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:14.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:14.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:14.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:14.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:14.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:14.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:14.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:14.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:14.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:14.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:14.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:14.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:14.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:14.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:14.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:14.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:14.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:14.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:14.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:14.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:14.130][self$createEntryFromContent] Accession numbers: 65641.
biodb.TRACE[2025-08-09 16:05:14.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:14.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:14.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:14.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:14.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:14.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:14.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:14.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:14.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:14.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:14.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:14.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:14.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:14.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:14.160][private$loadEntries] Creating entries from ids [1]: "144071".
biodb.DEBUG[2025-08-09 16:05:14.161][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:14.163][cch$loadFileContent] Trying to load 1 files from cache: [1]: "144071".
biodb.TRACE[2025-08-09 16:05:14.164][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:14.166][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:14.167][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:14.168][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:14.170][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:14.171][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:14.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:14.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:14.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:14.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:14.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:14.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:14.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:14.188][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.DEBUG[2025-08-09 16:05:14.191][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:14.192][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:14.194][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.TRACE[2025-08-09 16:05:14.489][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071).
biodb.DEBUG[2025-08-09 16:05:14.770][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:14.773][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.content"
biodb.TRACE[2025-08-09 16:05:14.788][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.request"
biodb.TRACE[2025-08-09 16:05:14.792][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/144071.xml"
biodb.DEBUG[2025-08-09 16:05:14.795][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:14.796][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:14.798][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:14.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:14.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:14.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:14.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:14.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:14.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:14.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:14.816][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:14.817][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:14.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.819][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:14.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:14.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.826][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:14.827][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:14.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.829][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.831][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:14.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:14.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.836][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:14.837][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:14.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.840][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.841][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:14.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:14.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.846][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:14.848][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:14.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.850][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:14.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:14.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.856][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:14.858][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:14.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.860][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:14.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:14.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.866][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:14.868][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:14.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.870][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.871][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:14.873][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:14.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.875][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.876][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:14.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:14.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.881][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:14.883][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:14.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.885][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:14.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:14.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.891][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:14.892][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:14.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.895][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.896][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:14.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:14.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.901][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:14.903][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:14.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.905][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.907][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:14.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:14.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.912][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:14.913][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:14.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.915][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.917][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:14.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:14.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:14.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:14.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:14.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:14.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:14.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:14.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:14.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:14.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:14.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:14.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:14.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:14.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:14.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:14.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:14.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:14.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:14.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:14.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:14.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:14.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:14.971][self$createEntryFromContent] Accession numbers: 144071.
biodb.TRACE[2025-08-09 16:05:14.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:14.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:14.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:14.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:14.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:14.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:14.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:14.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:14.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:14.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:14.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:14.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:14.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:14.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:14.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:14.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:15.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:15.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:15.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:15.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:15.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:15.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:15.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:15.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:15.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:15.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:15.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:15.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:15.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:15.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:15.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:15.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:15.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:15.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:15.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:15.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:15.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:15.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:15.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:15.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:15.086][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:15.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:15.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:15.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:15.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:15.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:15.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:15.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:15.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:15.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:15.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:15.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:15.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:15.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:15.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:15.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:15.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:15.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:15.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:15.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:15.175][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:15.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:15.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:15.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:15.179][private$loadEntries] Creating entries from ids [1]: "168650".
biodb.DEBUG[2025-08-09 16:05:15.181][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:15.183][cch$loadFileContent] Trying to load 1 files from cache: [1]: "168650".
biodb.TRACE[2025-08-09 16:05:15.184][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:15.186][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:15.187][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:15.188][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:15.189][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:15.191][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:15.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:15.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:15.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:15.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:15.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:15.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:15.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:15.207][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.DEBUG[2025-08-09 16:05:15.210][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:15.212][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:15.213][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.TRACE[2025-08-09 16:05:15.498][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650).
biodb.DEBUG[2025-08-09 16:05:15.780][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:15.792][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.content"
biodb.TRACE[2025-08-09 16:05:15.797][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.request"
biodb.TRACE[2025-08-09 16:05:15.801][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/168650.xml"
biodb.DEBUG[2025-08-09 16:05:15.803][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:15.805][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:15.806][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:15.808][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:15.809][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:15.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:15.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:15.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:15.820][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:15.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:15.824][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:15.825][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:15.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.827][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:15.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:15.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.834][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:15.835][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:15.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.837][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.839][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:15.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:15.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.844][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:15.845][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:15.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.847][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.849][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:15.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:15.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.854][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:15.855][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:15.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.857][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:15.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:15.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.864][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:15.865][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:15.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.867][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:15.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:15.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.874][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:15.875][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:15.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.877][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.879][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:15.880][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.882][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.884][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:15.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.889][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:15.890][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:15.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.892][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:15.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:15.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.899][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:15.900][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:15.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.902][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.904][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:15.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:15.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.909][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:15.910][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:15.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.912][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.914][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:15.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:15.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.919][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:15.920][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:15.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.922][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.924][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:15.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:15.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:15.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:15.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:15.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:15.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:15.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:15.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:15.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:15.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:15.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:15.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:15.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:15.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:15.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:15.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:15.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:15.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:15.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:15.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:15.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:15.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:15.977][self$createEntryFromContent] Accession numbers: 168650.
biodb.TRACE[2025-08-09 16:05:15.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:15.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:15.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:15.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:15.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:15.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:15.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:16.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:16.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:16.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:16.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:16.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:16.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:16.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:16.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:16.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:16.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:16.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:16.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:16.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:16.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:16.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:16.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:16.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:16.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:16.035][private$loadEntries] Creating entries from ids [1]: "169305".
biodb.DEBUG[2025-08-09 16:05:16.036][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:16.038][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169305".
biodb.TRACE[2025-08-09 16:05:16.040][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:16.041][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:16.043][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:16.044][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:16.045][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:16.046][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:16.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:16.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:16.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:16.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:16.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:16.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:16.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:16.063][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.DEBUG[2025-08-09 16:05:16.066][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:16.068][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:16.069][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.TRACE[2025-08-09 16:05:16.355][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305).
biodb.DEBUG[2025-08-09 16:05:16.643][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:16.646][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.content"
biodb.TRACE[2025-08-09 16:05:16.650][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.request"
biodb.TRACE[2025-08-09 16:05:16.654][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169305.xml"
biodb.DEBUG[2025-08-09 16:05:16.656][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:16.658][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:16.659][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:16.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:16.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:16.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:16.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:16.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:16.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:16.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:16.677][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:16.678][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:16.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.680][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:16.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:16.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.687][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:16.688][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:16.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.691][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.692][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:16.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:16.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.697][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:16.698][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:16.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.701][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.702][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:16.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:16.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.707][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:16.709][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:16.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.711][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:16.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:16.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.718][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:16.719][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:16.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.721][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.723][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:16.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:16.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.728][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:16.729][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:16.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.731][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.733][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:16.734][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:16.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.737][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.738][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:16.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:16.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.743][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:16.744][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:16.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.747][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:16.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:16.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.753][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:16.755][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:16.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.757][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.759][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:16.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:16.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.764][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:16.765][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:16.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.767][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.769][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:16.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:16.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.774][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:16.775][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:16.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.777][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.779][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:16.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:16.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:16.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:16.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:16.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:16.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:16.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:16.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:16.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:16.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:16.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:16.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:16.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:16.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:16.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:16.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:16.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:16.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:16.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:16.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:16.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:16.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:16.844][self$createEntryFromContent] Accession numbers: 169305.
biodb.TRACE[2025-08-09 16:05:16.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:16.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:16.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:16.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:16.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:16.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:16.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:16.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:16.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:16.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:16.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:16.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:16.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:16.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:16.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:16.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:16.874][private$loadEntries] Creating entries from ids [1]: "176869".
biodb.DEBUG[2025-08-09 16:05:16.875][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:16.877][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176869".
biodb.TRACE[2025-08-09 16:05:16.879][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:16.880][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:16.881][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:16.883][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:16.884][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:16.885][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:16.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:16.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:16.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:16.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:16.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:16.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:16.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:16.904][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.DEBUG[2025-08-09 16:05:16.907][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:16.909][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:16.910][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.TRACE[2025-08-09 16:05:17.198][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869).
biodb.DEBUG[2025-08-09 16:05:17.484][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:17.487][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.content"
biodb.TRACE[2025-08-09 16:05:17.491][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.request"
biodb.TRACE[2025-08-09 16:05:17.495][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176869.xml"
biodb.DEBUG[2025-08-09 16:05:17.497][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:17.499][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:17.500][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:17.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:17.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:17.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:17.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:17.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:17.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:17.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:17.518][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:17.519][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:17.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.522][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:17.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:17.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.528][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:17.530][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:17.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.532][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.534][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:17.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:17.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.539][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:17.540][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:17.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.542][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.544][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:17.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:17.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.549][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:17.550][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:17.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.553][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:17.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:17.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.559][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:17.560][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:17.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.563][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.564][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:17.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:17.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.569][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:17.570][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:17.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.573][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.574][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:17.576][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:17.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.578][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.579][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:17.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:17.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.584][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:17.586][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:17.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.588][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:17.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:17.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.595][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:17.596][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:17.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.598][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.600][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:17.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:17.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.605][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:17.606][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:17.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.609][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.610][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:17.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:17.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.615][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:17.617][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:17.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.619][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.620][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:17.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:17.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:17.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:17.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:17.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:17.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:17.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:17.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:17.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:17.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:17.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:17.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:17.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:17.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:17.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:17.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:17.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:17.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:17.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:17.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:17.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:17.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:17.675][self$createEntryFromContent] Accession numbers: 176869.
biodb.TRACE[2025-08-09 16:05:17.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:17.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:17.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:17.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:17.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:17.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:17.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:17.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:17.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:17.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:17.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:17.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:17.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:17.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:17.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:17.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:17.705][private$loadEntries] Creating entries from ids [1]: "185696".
biodb.DEBUG[2025-08-09 16:05:17.706][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:17.708][cch$loadFileContent] Trying to load 1 files from cache: [1]: "185696".
biodb.TRACE[2025-08-09 16:05:17.710][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:17.711][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:17.712][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:17.714][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:17.715][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:17.716][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:17.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:17.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:17.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:17.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:17.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:17.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:17.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:17.733][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.DEBUG[2025-08-09 16:05:17.736][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:17.738][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:17.739][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.TRACE[2025-08-09 16:05:18.024][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696).
biodb.DEBUG[2025-08-09 16:05:18.305][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:18.308][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.content"
biodb.TRACE[2025-08-09 16:05:18.348][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.request"
biodb.TRACE[2025-08-09 16:05:18.353][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/185696.xml"
biodb.DEBUG[2025-08-09 16:05:18.355][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:18.356][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:18.358][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:18.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:18.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:18.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:18.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:18.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:18.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:18.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:18.375][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:18.376][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:18.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.379][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:18.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:18.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.385][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:18.386][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:18.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.389][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.400][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:18.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:18.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.406][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:18.407][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:18.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.410][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.411][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:18.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:18.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.416][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:18.418][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:18.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.420][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:18.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:18.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.426][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:18.427][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:18.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.430][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:18.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:18.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.436][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:18.437][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:18.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.440][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.441][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:18.443][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:18.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.445][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.446][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:18.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:18.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.451][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:18.452][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:18.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.455][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:18.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:18.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.461][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:18.462][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:18.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.465][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.466][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:18.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:18.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.471][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:18.472][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:18.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.475][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.476][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:18.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:18.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.481][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:18.482][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:18.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.485][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.486][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:18.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:18.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:18.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:18.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:18.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:18.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:18.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:18.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:18.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:18.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:18.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:18.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:18.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:18.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:18.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:18.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:18.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:18.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:18.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:18.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:18.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:18.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:18.540][self$createEntryFromContent] Accession numbers: 185696.
biodb.TRACE[2025-08-09 16:05:18.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:18.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:18.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:18.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:18.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:18.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:18.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:18.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:18.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:18.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:18.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:18.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:18.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:18.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:18.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:18.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:18.570][private$loadEntries] Creating entries from ids [1]: "190762".
biodb.DEBUG[2025-08-09 16:05:18.571][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:18.573][cch$loadFileContent] Trying to load 1 files from cache: [1]: "190762".
biodb.TRACE[2025-08-09 16:05:18.574][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:18.576][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:18.577][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:18.578][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:18.580][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:18.581][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:18.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:18.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:18.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:18.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:18.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:18.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:18.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:18.598][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.DEBUG[2025-08-09 16:05:18.601][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:18.602][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:18.604][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.TRACE[2025-08-09 16:05:18.892][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762).
biodb.DEBUG[2025-08-09 16:05:19.181][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:19.184][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.content"
biodb.TRACE[2025-08-09 16:05:19.189][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.request"
biodb.TRACE[2025-08-09 16:05:19.192][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/190762.xml"
biodb.DEBUG[2025-08-09 16:05:19.195][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:19.196][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:19.198][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:19.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:19.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:19.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:19.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:19.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:19.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:19.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:19.215][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:19.216][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:19.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.219][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:19.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:19.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.225][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:19.227][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:19.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.229][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.230][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:19.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:19.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.236][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:19.237][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:19.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.239][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.241][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:19.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:19.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.246][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:19.247][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:19.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.250][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:19.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:19.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.256][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:19.258][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:19.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.260][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.261][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:19.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:19.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.266][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:19.268][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:19.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.270][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.272][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:19.273][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:19.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.275][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.277][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:19.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:19.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.282][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:19.283][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:19.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.286][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:19.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:19.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.292][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:19.294][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:19.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.296][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.298][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:19.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:19.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.303][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:19.304][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:19.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.306][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.308][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:19.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:19.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.313][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:19.314][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:19.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.316][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.318][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:19.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:19.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:19.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:19.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:19.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:19.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:19.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:19.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:19.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:19.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:19.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:19.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:19.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:19.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:19.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:19.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:19.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:19.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:19.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:19.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:19.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:19.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:19.373][self$createEntryFromContent] Accession numbers: 190762.
biodb.TRACE[2025-08-09 16:05:19.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:19.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:19.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:19.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:19.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:19.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:19.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:19.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:19.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:19.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:19.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:19.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:19.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:19.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:19.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:19.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:19.413][private$loadEntries] Creating entries from ids [1]: "193176".
biodb.DEBUG[2025-08-09 16:05:19.414][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:19.416][cch$loadFileContent] Trying to load 1 files from cache: [1]: "193176".
biodb.TRACE[2025-08-09 16:05:19.417][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:19.419][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:19.420][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:19.422][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:19.423][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:19.424][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:19.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:19.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:19.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:19.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:19.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:19.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:19.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:19.442][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.DEBUG[2025-08-09 16:05:19.445][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:19.447][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:19.448][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.TRACE[2025-08-09 16:05:19.740][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176).
biodb.DEBUG[2025-08-09 16:05:20.019][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:20.022][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.content"
biodb.TRACE[2025-08-09 16:05:20.026][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.request"
biodb.TRACE[2025-08-09 16:05:20.029][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/193176.xml"
biodb.DEBUG[2025-08-09 16:05:20.031][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:20.033][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:20.034][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:20.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:20.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:20.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:20.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:20.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:20.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:20.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:20.051][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:20.053][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:20.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.055][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:20.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:20.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.062][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:20.063][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:20.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.065][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.067][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:20.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:20.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.072][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:20.073][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:20.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.075][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.077][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:20.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:20.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.082][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:20.083][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:20.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.085][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:20.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:20.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.092][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:20.093][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:20.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.095][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.097][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:20.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:20.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.102][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:20.103][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:20.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.106][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.107][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:20.109][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:20.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.111][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.112][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:20.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:20.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.118][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:20.119][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:20.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.121][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:20.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:20.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.128][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:20.129][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:20.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.131][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.133][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:20.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:20.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.138][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:20.139][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:20.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.141][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.143][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:20.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:20.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.148][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:20.149][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:20.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.151][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.153][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:20.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:20.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:20.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:20.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:20.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:20.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:20.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:20.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:20.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:20.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:20.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:20.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:20.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:20.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:20.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:20.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:20.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:20.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:20.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:20.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:20.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:20.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:20.206][self$createEntryFromContent] Accession numbers: 193176.
biodb.TRACE[2025-08-09 16:05:20.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:20.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:20.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:20.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:20.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:20.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:20.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:20.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:20.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:20.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:20.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:20.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:20.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:20.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:20.236][private$loadEntries] Creating entries from ids [1]: "196395".
biodb.DEBUG[2025-08-09 16:05:20.237][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:20.239][cch$loadFileContent] Trying to load 1 files from cache: [1]: "196395".
biodb.TRACE[2025-08-09 16:05:20.241][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:20.242][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:20.243][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:20.245][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:20.246][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:20.247][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:20.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:20.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:20.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:20.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:20.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:20.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:20.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:20.264][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.DEBUG[2025-08-09 16:05:20.268][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:20.269][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:20.270][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.TRACE[2025-08-09 16:05:20.569][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395).
biodb.DEBUG[2025-08-09 16:05:20.860][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:20.862][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.content"
biodb.TRACE[2025-08-09 16:05:20.867][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.request"
biodb.TRACE[2025-08-09 16:05:20.870][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/196395.xml"
biodb.DEBUG[2025-08-09 16:05:20.872][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:20.874][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:20.875][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:20.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:20.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:20.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:20.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:20.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:20.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:20.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:20.893][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:20.894][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:20.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.896][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:20.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:20.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.903][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:20.904][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:20.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.906][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.908][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:20.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:20.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.913][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:20.914][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:20.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.916][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.918][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:20.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:20.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.923][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:20.924][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:20.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.927][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:20.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:20.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.933][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:20.934][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:20.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.937][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:20.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:20.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.943][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:20.944][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:20.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.947][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.948][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:20.949][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:20.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.952][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.953][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:20.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:20.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.958][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:20.960][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:20.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.962][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:20.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:20.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.968][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:20.970][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:20.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.972][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.984][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:20.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:20.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.989][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:20.991][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:20.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.993][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:20.995][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:20.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:20.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:20.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.000][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:21.001][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:21.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.003][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.005][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:21.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:21.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:21.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:21.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:21.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:21.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:21.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:21.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:21.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:21.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:21.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:21.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:21.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:21.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:21.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:21.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:21.058][self$createEntryFromContent] Accession numbers: 196395.
biodb.TRACE[2025-08-09 16:05:21.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:21.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:21.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:21.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:21.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:21.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:21.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:21.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:21.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:21.103][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:05:21.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:21.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:21.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:21.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:21.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:21.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:21.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:21.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.131][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:21.132][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:21.133][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:21.134][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:21.136][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:21.137][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.138][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.140][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.142][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.143][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.145][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.146][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:21.148][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:21.149][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.150][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.152][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.154][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:21.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.170][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-09 16:05:21.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:21.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:21.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:21.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:21.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:21.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:21.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:21.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.195][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:21.196][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:21.198][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:21.199][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:21.200][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:21.201][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.202][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.205][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.206][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.207][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.209][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.211][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:21.212][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:21.213][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.214][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.217][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.218][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:21.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.234][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-08-09 16:05:21.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:21.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:21.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:21.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:21.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:21.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:21.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:21.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.260][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:21.261][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:21.262][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:21.263][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:21.264][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:21.265][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.267][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.269][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.270][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.271][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.274][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.275][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:21.276][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:21.277][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.279][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.281][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.282][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:21.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.298][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-08-09 16:05:21.299][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:05:21.301][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:05:21.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:21.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:21.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:21.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:21.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:21.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:21.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:21.346][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:05:21.349][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:05:21.351][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ebf8c17fa19fb0caf99d83ca8441a2ac".
biodb.TRACE[2025-08-09 16:05:21.353][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:05:21.355][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content".
biodb.DEBUG[2025-08-09 16:05:21.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:21.362][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:21.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:21.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:21.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:21.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:21.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:21.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:21.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:21.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:21.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:21.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:21.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:21.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:21.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:21.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:21.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:21.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:21.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:21.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:21.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:21.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:21.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:21.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:21.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:21.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:21.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:21.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:21.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:21.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:21.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:21.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:21.484][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:05:21.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:21.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:21.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:21.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:21.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:21.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:21.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:21.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.509][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:21.510][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:21.511][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:21.513][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:21.514][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:21.515][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.516][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.519][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.520][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.521][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.523][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.525][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:21.526][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:21.527][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.528][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.531][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.532][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:21.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.548][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-08-09 16:05:21.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:21.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:21.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:21.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:21.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:21.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:21.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:21.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.573][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:21.575][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:21.576][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:21.577][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:21.578][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:21.579][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.581][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.583][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.584][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.585][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.588][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.589][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:21.590][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:21.591][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.593][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.595][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.596][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:21.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.612][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2025-08-09 16:05:21.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:21.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:21.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:21.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:21.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:21.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:21.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:21.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.637][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:21.638][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:21.640][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:21.641][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:21.642][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:21.643][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.645][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.647][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.648][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.649][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.652][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.653][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:21.654][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:21.655][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.656][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.659][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.660][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:21.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.676][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2025-08-09 16:05:21.677][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:05:21.678][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:05:21.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:21.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:21.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:21.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:21.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:21.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:21.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:21.696][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:05:21.700][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:05:21.701][cch$loadFileContent] Trying to load 1 files from cache: [1]: "152225e020c3e5947a0f5a90f021cee7".
biodb.TRACE[2025-08-09 16:05:21.703][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:05:21.706][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content".
biodb.DEBUG[2025-08-09 16:05:21.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:21.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:21.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:21.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:21.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:21.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:21.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:21.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:21.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:21.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:21.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:21.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:21.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:21.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:21.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:21.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:21.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:21.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:21.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:21.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:21.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:21.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:21.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:21.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:21.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:21.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:21.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:21.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:21.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:21.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:21.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:21.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:21.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:21.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:21.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:21.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:21.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:21.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:21.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:21.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:21.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:21.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:21.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:21.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:21.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:21.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:21.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:21.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:21.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:21.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:21.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:21.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:21.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:21.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:21.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:21.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:21.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:21.919][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:05:21.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:21.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:21.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:21.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:21.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:21.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:21.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:21.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.945][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:21.946][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:21.947][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:21.948][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:21.949][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:21.951][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.952][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.954][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.955][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.957][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.959][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.960][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:21.961][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:21.963][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.964][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.966][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.967][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:21.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:21.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:21.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:21.984][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2025-08-09 16:05:21.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:21.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:21.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:21.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:21.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:21.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:21.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:22.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.009][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.011][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:22.012][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:22.013][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:22.014][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.015][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.017][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.019][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.020][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.021][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.024][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.025][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.026][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.027][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.029][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.031][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.032][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:22.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.048][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2025-08-09 16:05:22.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:22.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:22.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:22.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:22.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:22.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:22.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:22.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.073][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.075][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:22.076][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:22.077][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:22.078][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.079][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.081][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.083][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.084][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.085][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.088][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.089][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.090][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.091][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.093][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.095][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.096][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:22.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.113][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2025-08-09 16:05:22.114][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:05:22.115][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:05:22.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:22.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:22.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:22.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:22.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:22.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:22.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:22.133][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:05:22.136][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:05:22.138][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9686ce9c957a368dd8f5b4cc9c5b15b3".
biodb.TRACE[2025-08-09 16:05:22.140][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:05:22.142][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content".
biodb.DEBUG[2025-08-09 16:05:22.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:22.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:22.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:22.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:22.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:22.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:22.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:22.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:22.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:22.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:22.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:22.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:22.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:22.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:22.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:22.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:22.203][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:05:22.206][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:05:22.208][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5d833e77a1be58060d0c3916a1e1b293".
biodb.TRACE[2025-08-09 16:05:22.209][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:05:22.212][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content".
biodb.DEBUG[2025-08-09 16:05:22.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:22.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:22.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:22.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:22.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:22.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:22.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:22.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:22.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:22.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:22.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:22.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:22.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:22.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:22.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:22.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:22.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:22.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:22.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:22.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:22.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:22.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:22.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:22.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:22.309][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:05:22.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:22.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:22.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:22.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:22.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:22.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:22.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:22.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.334][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.335][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:22.336][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:22.338][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:22.339][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.340][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.341][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.343][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.345][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.346][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.348][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.349][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.351][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.352][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.353][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.355][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.356][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:22.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.372][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2025-08-09 16:05:22.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:22.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:22.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:22.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:22.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:22.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:22.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:22.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.397][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.399][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:22.400][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:22.401][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:22.402][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.403][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.404][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.407][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.408][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.409][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.412][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.413][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.414][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.415][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.417][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.419][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.420][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:22.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.437][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2025-08-09 16:05:22.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:22.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:22.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:22.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:22.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:22.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:22.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:22.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.462][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.463][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:22.464][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:22.465][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:22.466][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.468][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.469][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.471][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.472][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.474][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.476][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.477][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.478][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.479][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.481][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.483][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.484][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:22.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.500][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2025-08-09 16:05:22.501][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:05:22.503][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:05:22.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:22.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:22.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:22.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:22.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:22.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:22.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:22.549][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:05:22.552][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:05:22.554][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-08-09 16:05:22.556][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:05:22.558][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-08-09 16:05:22.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:22.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:22.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:22.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:22.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:22.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:22.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:22.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:22.590][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:05:22.594][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:05:22.595][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-08-09 16:05:22.597][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:05:22.599][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-08-09 16:05:22.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:22.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:22.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:22.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:22.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:22.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:22.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:22.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:22.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:22.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:22.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:22.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:22.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:22.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:22.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:22.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:22.659][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:05:22.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:22.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:22.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:22.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:22.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:22.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:22.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:22.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.685][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.686][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:22.687][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:22.688][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:22.690][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.691][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.692][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.694][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.696][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.697][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.699][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.700][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.702][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.703][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.704][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.714][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.716][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:22.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.732][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-08-09 16:05:22.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:22.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:22.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:22.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:22.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:22.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:22.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:22.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.757][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.758][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:22.759][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:22.760][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:22.762][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.763][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.764][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.766][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.768][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.769][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.771][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.772][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.773][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.775][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.776][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.778][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.779][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:22.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.795][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-09 16:05:22.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:22.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:22.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:22.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:22.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:22.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:22.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:22.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.820][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.821][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:22.822][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:22.823][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:22.824][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.826][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.827][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.829][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.830][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.832][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.834][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.835][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.836][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:22.837][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.839][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.841][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.842][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:22.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:22.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.859][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-08-09 16:05:22.860][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:05:22.861][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:05:22.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:22.864][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:22.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:22.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:22.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:22.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:22.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:22.879][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:05:22.882][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:05:22.884][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-08-09 16:05:22.886][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:05:22.888][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-08-09 16:05:22.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:22.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:22.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:22.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:22.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:22.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:22.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:22.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:22.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:22.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:22.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:22.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:22.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:22.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:22.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:22.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:22.948][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:05:22.952][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:05:22.953][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-08-09 16:05:22.955][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:05:22.958][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-08-09 16:05:22.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:22.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:22.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:22.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:22.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:22.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:22.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:22.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:22.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:22.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:22.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:22.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:22.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:22.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:22.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:22.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:23.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:23.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:23.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:23.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:23.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:23.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:23.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:23.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:23.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:23.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:23.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:23.046][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:05:23.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:23.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:23.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:23.057][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:23.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:23.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:23.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:23.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.072][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:23.073][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:23.074][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:23.075][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:23.076][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:23.078][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.079][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.081][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.083][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.084][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.086][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.087][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:23.089][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:23.090][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.091][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.093][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.095][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:23.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.112][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-09 16:05:23.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:23.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:23.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:23.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:23.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:23.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:23.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:23.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.146][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:23.147][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:23.148][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:23.149][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:23.151][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:23.152][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.155][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.157][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.158][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.160][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.162][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:23.163][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:23.164][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.165][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.167][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.169][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:23.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.185][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-09 16:05:23.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:23.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:23.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:23.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:23.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:23.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:23.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:23.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.210][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:23.211][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:23.212][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:23.214][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:23.215][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:23.216][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.217][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.220][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.221][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.222][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.224][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.226][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:23.227][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:23.228][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.229][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.231][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.233][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:23.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.249][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-09 16:05:23.250][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:05:23.251][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:05:23.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:23.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:23.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:23.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:23.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:23.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:23.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:23.269][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:05:23.272][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:05:23.274][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-08-09 16:05:23.275][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:05:23.278][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-08-09 16:05:23.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:23.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:23.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:23.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:23.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:23.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:23.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:23.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:23.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:23.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:23.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:23.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:23.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:23.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:23.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:23.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:23.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:23.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:23.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:23.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:23.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:23.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:23.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:23.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:23.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:23.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:23.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:23.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:23.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:23.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:23.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:23.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:23.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:23.396][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:23.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:23.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:23.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:23.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:23.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:23.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:23.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:23.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:23.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:23.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:23.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:23.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:23.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:23.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:23.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:23.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:23.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:23.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:23.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:23.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:23.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:23.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:23.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:23.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:23.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:23.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:23.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:23.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:23.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:23.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:23.511][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:05:23.515][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:05:23.517][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-08-09 16:05:23.518][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:05:23.521][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-08-09 16:05:23.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:23.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:23.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:23.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:23.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:23.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:23.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:23.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:23.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:23.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:23.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:23.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:23.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:23.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:23.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:23.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:23.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:23.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:23.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:23.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:23.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:23.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:23.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:23.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:23.617][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:05:23.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:23.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:23.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:23.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:23.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:23.630][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:23.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:23.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.643][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:23.644][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:23.645][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:23.646][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:23.647][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:23.648][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.650][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.652][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.653][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.655][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.657][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.658][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:23.659][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:23.660][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.662][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.664][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.665][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:23.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.681][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-09 16:05:23.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:23.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:23.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:23.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:23.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:23.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:23.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:23.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.706][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:23.707][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:23.708][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:23.710][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:23.711][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:23.712][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.713][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.716][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.717][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.718][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.720][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.722][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:23.723][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:23.724][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.725][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.728][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.729][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:23.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.745][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-08-09 16:05:23.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:23.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:23.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:23.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:23.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:23.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:23.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:23.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.770][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:23.771][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:23.772][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:23.773][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:23.774][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:23.776][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.777][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.779][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.780][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.782][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.784][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.785][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:23.786][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:23.787][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.789][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.791][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.792][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:23.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:23.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.808][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-08-09 16:05:23.809][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:05:23.811][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:05:23.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:23.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:23.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:23.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:23.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:23.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:23.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:23.854][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:05:23.857][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:05:23.859][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2b6f29bb7a7663ff23fb5e7dcae5c27f".
biodb.TRACE[2025-08-09 16:05:23.860][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:05:23.863][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content".
biodb.DEBUG[2025-08-09 16:05:23.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:23.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:23.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:23.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:23.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:23.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:23.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:23.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:23.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:23.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:23.897][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:23.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:23.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:23.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:23.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:23.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:23.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:23.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:23.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:23.932][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:23.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:23.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:23.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:23.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:23.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:23.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:23.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:23.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:23.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:23.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:23.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:23.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:23.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:23.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:23.980][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:23.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:23.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:23.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:23.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:23.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:23.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:23.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:23.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:24.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:24.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:24.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:24.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:24.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:24.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:24.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:24.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:24.045][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:05:24.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:24.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:24.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:24.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:24.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:24.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:24.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:24.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.071][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:24.072][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:24.073][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:24.074][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:24.075][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:24.076][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.078][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.080][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.081][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.083][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.085][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.086][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:24.087][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:24.088][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.090][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.092][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.093][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:24.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.109][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-09 16:05:24.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:24.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:24.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:24.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:24.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:24.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:24.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:24.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.144][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:24.145][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:24.146][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:24.148][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:24.149][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:24.150][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.152][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.154][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.155][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.157][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.159][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.160][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:24.161][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:24.163][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.164][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.166][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.167][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:24.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.184][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2025-08-09 16:05:24.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:24.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:24.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:24.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:24.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:24.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:24.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:24.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.209][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:24.210][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:24.211][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:24.212][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:24.214][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:24.215][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.216][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.218][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.220][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.221][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.223][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.224][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:24.226][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:24.227][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.228][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.230][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.231][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:24.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.247][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2025-08-09 16:05:24.249][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:05:24.250][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:05:24.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:24.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:24.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:24.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:24.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:24.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:24.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:24.268][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:05:24.271][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:05:24.273][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9a13652ab89a613a3b0e10d3b6cb10a0".
biodb.TRACE[2025-08-09 16:05:24.274][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:05:24.277][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content".
biodb.DEBUG[2025-08-09 16:05:24.282][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:24.283][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:24.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:24.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:24.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:24.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:24.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:24.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:24.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:24.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:24.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:24.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:24.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:24.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:24.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:24.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.330][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:24.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:24.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:24.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:24.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:24.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:24.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:24.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:24.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:24.368][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:05:24.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:24.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:24.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:24.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:24.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:24.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:24.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:24.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.394][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:24.395][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:24.396][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:24.397][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:24.398][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:24.400][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.401][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.403][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.404][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.406][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.408][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.409][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:24.411][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:24.412][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.413][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.415][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.416][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:24.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.441][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-09 16:05:24.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:24.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:24.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:24.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:24.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:24.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:24.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:24.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.466][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:24.467][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:24.468][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:24.470][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:24.471][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:24.472][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.473][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.476][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.477][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.478][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.480][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.481][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:24.483][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:24.484][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.485][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.487][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.489][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:24.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.505][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-09 16:05:24.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:24.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:24.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:24.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:24.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:24.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:24.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:24.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.529][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:24.530][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:24.532][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:24.533][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:24.534][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:24.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.539][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.540][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.541][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.543][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.544][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:24.546][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:24.547][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.548][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.550][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.551][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:24.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:24.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.568][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-09 16:05:24.569][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:05:24.570][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:05:24.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:24.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:24.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:24.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:24.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:24.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:24.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:24.588][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:05:24.592][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:05:24.593][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a985300ab8a01d49254fbf993ad91279".
biodb.TRACE[2025-08-09 16:05:24.595][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:05:24.597][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content".
biodb.DEBUG[2025-08-09 16:05:24.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:24.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:24.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:24.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:24.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:24.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:24.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:24.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:24.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:24.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:24.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:24.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:24.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:24.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:24.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:24.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:24.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:24.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:24.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:24.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:24.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:24.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:24.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:24.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:24.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:24.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:24.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:24.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:24.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:24.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:24.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:24.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:24.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:24.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:24.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:24.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:24.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:24.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:24.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:24.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:24.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:24.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:24.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:24.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:24.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:24.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:24.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:24.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:24.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:24.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:24.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:24.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:24.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:24.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:24.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:24.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:24.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:24.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:24.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:24.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:24.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:24.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:24.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:24.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:24.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:24.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:24.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:24.838][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:24.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:24.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:24.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:24.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:24.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:24.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:24.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:24.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:24.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:24.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:24.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:24.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:24.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:24.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:24.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:24.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:24.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:24.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:24.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:24.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:24.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:24.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:24.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:24.932][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:24.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:24.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:24.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:24.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:24.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:24.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:24.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:24.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:24.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:24.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:24.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:24.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:24.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:24.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:24.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:24.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:24.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:24.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:24.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:24.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:24.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:24.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:24.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:25.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:25.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:25.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:25.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:25.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:25.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:25.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:25.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:25.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:25.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:25.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:25.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:25.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:25.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:25.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:25.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:25.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:25.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:25.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:25.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:25.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:25.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:25.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:25.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:25.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:25.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:25.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:25.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:25.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:25.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:25.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:25.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:25.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:25.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:25.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:25.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:25.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:25.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:25.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:25.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:25.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:25.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:25.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:25.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:25.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:25.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:25.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:25.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.178][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:25.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:25.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:25.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:25.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:25.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:25.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:25.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:25.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:25.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:25.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:25.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:25.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:25.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:25.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:25.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:25.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:25.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:25.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:25.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:25.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:25.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:25.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:25.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:25.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:25.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:25.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:25.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:25.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:25.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:25.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:25.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:25.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:25.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:25.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:25.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:25.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:25.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:25.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:25.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:25.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.330][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:25.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:25.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:25.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:25.349][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:25.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:25.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:25.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:25.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:25.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:25.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:25.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:25.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:25.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:25.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:25.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:25.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:25.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:25.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:25.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:25.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:25.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:25.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:25.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:25.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:25.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:25.425][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:05:25.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:25.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:25.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:25.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:25.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:25.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:25.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:25.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.450][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:25.451][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:25.453][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:25.454][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:25.455][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:25.456][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.458][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.460][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.461][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.462][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.465][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.466][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:25.467][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:25.468][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.470][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.472][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.473][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:25.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.489][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-09 16:05:25.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:25.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:25.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:25.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:25.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:25.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:25.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:25.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.514][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:25.515][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:25.516][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:25.518][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:25.519][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:25.520][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.521][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.523][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.525][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.526][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.528][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.529][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:25.531][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:25.532][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.533][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.535][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.537][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:25.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.553][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-08-09 16:05:25.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:25.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:25.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:25.563][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:25.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:25.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:25.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:25.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.578][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:25.579][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:25.580][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:25.581][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:25.582][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:25.583][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.585][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.587][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.588][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.589][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.592][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.593][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:25.594][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:25.595][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.597][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.599][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.600][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:25.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:25.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.616][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-08-09 16:05:25.617][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:05:25.618][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-09 16:05:25.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:25.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:25.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:25.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:25.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:25.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:25.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:25.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:25.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:25.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:25.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:25.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:25.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:25.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:25.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:25.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:25.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:25.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:25.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:25.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:25.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:25.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:25.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:25.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:25.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:25.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:25.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:25.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:25.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:25.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:25.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:25.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:25.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:25.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:25.720][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:05:25.730][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:25.732][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:25.734][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-08-09 16:05:26.026][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-08-09 16:05:26.428][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:26.431][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content"
biodb.TRACE[2025-08-09 16:05:26.436][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.request"
biodb.DEBUG[2025-08-09 16:05:26.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:26.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:26.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:26.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:26.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:26.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:26.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:26.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:26.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:26.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:26.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:26.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:26.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:26.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:26.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:26.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:26.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:26.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:26.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:26.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:26.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:26.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:26.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:26.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:26.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:26.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:26.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:26.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:26.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:26.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:26.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:26.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:26.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:26.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:26.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:26.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:26.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:26.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:26.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:26.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:26.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:26.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:26.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:26.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:26.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:26.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:26.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:26.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:26.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:26.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:26.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:26.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:26.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:26.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:26.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:26.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:26.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:26.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:26.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:26.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:26.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:26.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:26.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:26.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:26.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:26.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:26.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:26.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:26.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:26.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:26.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:26.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:26.552][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:26.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:26.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:26.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:26.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:26.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:26.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:26.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:26.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:26.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:26.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:26.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:26.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:26.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:26.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:26.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:26.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:26.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:26.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:26.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:26.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:26.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:26.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:26.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:26.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:26.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:26.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:26.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:26.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:26.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:26.599][private$loadEntries] Creating entries from ids [1]: "9442".
biodb.DEBUG[2025-08-09 16:05:26.601][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:26.602][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9442".
biodb.TRACE[2025-08-09 16:05:26.604][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:26.606][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:26.607][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:26.608][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:26.609][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:26.610][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:26.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:26.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:26.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:26.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:26.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:26.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:26.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:26.627][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.DEBUG[2025-08-09 16:05:26.630][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:26.631][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:26.633][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.TRACE[2025-08-09 16:05:26.925][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442).
biodb.DEBUG[2025-08-09 16:05:27.233][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:27.236][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.content"
biodb.TRACE[2025-08-09 16:05:27.241][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.request"
biodb.TRACE[2025-08-09 16:05:27.245][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9442.xml"
biodb.DEBUG[2025-08-09 16:05:27.247][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:27.249][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:27.250][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:27.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:27.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:27.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:27.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:27.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:27.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:27.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:27.268][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:27.269][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:27.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.271][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:27.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:27.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.278][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:27.279][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:27.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.281][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.283][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:27.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:27.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.288][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:27.289][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:27.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.291][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.293][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:27.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:27.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.298][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:27.299][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:27.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.301][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:27.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:27.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.308][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:27.309][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:27.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.311][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:27.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:27.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.318][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:27.319][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:27.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.321][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.323][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:27.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:27.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.328][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:27.329][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:27.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.332][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.333][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:27.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:27.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.338][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:27.340][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:27.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.342][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:27.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:27.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.349][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:27.350][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:27.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.352][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.354][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:27.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:27.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.359][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:27.360][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:27.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.362][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.364][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:27.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:27.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.369][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:27.370][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:27.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.372][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.374][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:27.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:27.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:27.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:27.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:27.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:27.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:27.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:27.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:27.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:27.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:27.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:27.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:27.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:27.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:27.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:27.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:27.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:27.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:27.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:27.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:27.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:27.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:27.428][self$createEntryFromContent] Accession numbers: 9442.
biodb.TRACE[2025-08-09 16:05:27.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:27.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:27.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:27.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:27.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:27.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:27.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:27.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:27.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:27.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:27.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:27.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:27.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:27.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:27.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:27.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:27.470][private$loadEntries] Creating entries from ids [1]: "34764".
biodb.DEBUG[2025-08-09 16:05:27.471][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:27.473][cch$loadFileContent] Trying to load 1 files from cache: [1]: "34764".
biodb.TRACE[2025-08-09 16:05:27.475][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:27.476][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:27.478][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:27.479][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:27.480][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:27.481][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:27.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:27.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:27.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:27.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:27.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:27.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:27.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:27.498][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.DEBUG[2025-08-09 16:05:27.501][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:27.502][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:27.504][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.TRACE[2025-08-09 16:05:27.811][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764).
biodb.DEBUG[2025-08-09 16:05:28.105][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:28.109][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.content"
biodb.TRACE[2025-08-09 16:05:28.113][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.request"
biodb.TRACE[2025-08-09 16:05:28.117][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34764.xml"
biodb.DEBUG[2025-08-09 16:05:28.119][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:28.121][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:28.122][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:28.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:28.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:28.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:28.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:28.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:28.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:28.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:28.139][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:28.140][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:28.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.143][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:28.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:28.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.149][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:28.151][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:28.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.153][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.154][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:28.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:28.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.159][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:28.161][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:28.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.163][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.165][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:28.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:28.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.170][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:28.171][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:28.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.173][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.175][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:28.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:28.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.180][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:28.181][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:28.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.183][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:28.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:28.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.190][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:28.191][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:28.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.193][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.195][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:28.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:28.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.200][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:28.201][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:28.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.204][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.205][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:28.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:28.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.210][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:28.211][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:28.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.214][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:28.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:28.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.220][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:28.221][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:28.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.224][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.225][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:28.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:28.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.230][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:28.232][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:28.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.234][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.236][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:28.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:28.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.241][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:28.242][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:28.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.244][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.246][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:28.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:28.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:28.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:28.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:28.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:28.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:28.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:28.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:28.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:28.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:28.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:28.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:28.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:28.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:28.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:28.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:28.299][self$createEntryFromContent] Accession numbers: 34764.
biodb.TRACE[2025-08-09 16:05:28.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:28.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:28.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:28.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:28.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:28.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:28.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:28.315][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:05:28.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:28.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:28.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:28.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:28.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:28.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:28.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:28.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.340][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:28.341][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:28.342][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:28.343][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:28.345][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:28.346][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.347][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.349][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.351][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.352][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.354][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.355][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:28.357][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:28.358][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.359][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.361][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.362][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:28.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.379][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-08-09 16:05:28.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:28.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:28.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:28.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:28.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:28.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:28.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:28.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.404][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:28.405][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:28.406][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:28.407][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:28.408][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:28.410][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.411][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.413][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.414][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.416][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.418][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.419][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:28.420][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:28.422][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.423][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.425][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.426][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:28.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.442][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-09 16:05:28.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:28.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:28.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:28.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:28.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:28.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:28.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:28.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.483][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:28.484][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:28.485][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:28.486][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:28.487][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:28.489][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.490][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.492][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.493][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.495][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.497][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.498][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:28.499][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:28.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.502][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.504][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.505][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:28.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:28.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:28.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:28.521][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2025-08-09 16:05:28.523][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:05:28.524][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:05:28.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:28.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:28.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:28.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:28.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:28.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:28.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:28.542][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:05:28.545][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:28.546][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:28.549][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-08-09 16:05:28.846][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-08-09 16:05:29.268][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:29.275][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content"
biodb.TRACE[2025-08-09 16:05:29.280][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.request"
biodb.DEBUG[2025-08-09 16:05:29.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:29.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:29.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:29.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:29.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:29.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:29.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:29.303][private$loadEntries] Creating entries from ids [1]: "2535".
biodb.DEBUG[2025-08-09 16:05:29.304][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:29.306][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2535".
biodb.TRACE[2025-08-09 16:05:29.308][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:29.309][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:29.311][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:29.312][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:29.313][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:29.314][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:29.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:29.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:29.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:29.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:29.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:29.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:29.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:29.332][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.DEBUG[2025-08-09 16:05:29.335][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:29.336][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:29.338][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.TRACE[2025-08-09 16:05:29.639][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535).
biodb.DEBUG[2025-08-09 16:05:29.926][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:29.929][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.content"
biodb.TRACE[2025-08-09 16:05:29.933][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.request"
biodb.TRACE[2025-08-09 16:05:29.937][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2535.xml"
biodb.DEBUG[2025-08-09 16:05:29.939][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:29.940][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:29.942][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:29.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:29.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:29.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:29.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:29.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:29.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:29.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:29.959][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:29.960][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:29.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:29.963][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:29.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:29.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:29.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:29.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:29.969][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:29.970][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:29.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:29.973][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:29.974][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:29.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:29.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:29.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:29.979][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:29.980][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:29.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:29.983][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:29.984][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:29.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:29.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:29.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:29.989][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:29.990][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:29.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:29.993][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:29.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:29.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:29.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:29.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:29.999][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:30.000][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:30.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.003][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:30.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:30.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.009][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:30.010][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:30.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.012][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.014][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:30.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:30.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.019][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:30.020][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:30.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.022][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.024][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:30.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:30.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.029][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:30.030][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:30.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.032][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:30.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:30.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.039][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:30.040][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:30.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.042][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.044][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:30.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:30.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.049][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:30.050][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:30.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.052][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.054][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:30.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:30.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.059][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:30.060][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:30.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.062][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.064][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:30.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:30.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:30.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:30.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:30.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:30.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:30.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:30.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:30.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:30.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:30.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:30.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:30.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:30.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:30.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:30.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:30.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:30.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:30.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:30.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:30.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:30.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:30.117][self$createEntryFromContent] Accession numbers: 2535.
biodb.TRACE[2025-08-09 16:05:30.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:30.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:30.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:30.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:30.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:30.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:30.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:30.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:30.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:30.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:30.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:30.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:30.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:30.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:30.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:30.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:30.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:30.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:30.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:30.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:30.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:30.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:30.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:30.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:30.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:30.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:30.173][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:30.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:30.176][private$loadEntries] Creating entries from ids [1]: "5525".
biodb.DEBUG[2025-08-09 16:05:30.177][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:30.179][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5525".
biodb.TRACE[2025-08-09 16:05:30.180][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:30.182][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:30.183][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:30.184][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:30.186][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:30.187][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:30.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:30.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:30.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:30.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:30.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:30.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:30.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:30.217][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.DEBUG[2025-08-09 16:05:30.220][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:30.221][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:30.223][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.TRACE[2025-08-09 16:05:30.518][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525).
biodb.DEBUG[2025-08-09 16:05:30.816][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:30.818][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.content"
biodb.TRACE[2025-08-09 16:05:30.823][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.request"
biodb.TRACE[2025-08-09 16:05:30.826][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5525.xml"
biodb.DEBUG[2025-08-09 16:05:30.829][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:30.830][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:30.832][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:30.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:30.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:30.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:30.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:30.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:30.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:30.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:30.849][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:30.850][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:30.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.853][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:30.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:30.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.859][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:30.860][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:30.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.863][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.864][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:30.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:30.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.869][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:30.870][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:30.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.873][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.874][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:30.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:30.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.879][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:30.880][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:30.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.883][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:30.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:30.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.889][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:30.890][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:30.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.893][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:30.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:30.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.899][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:30.900][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:30.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.903][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.904][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:30.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:30.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.909][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:30.910][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:30.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.913][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.914][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:30.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:30.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.919][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:30.920][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:30.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.922][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:30.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:30.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.929][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:30.930][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:30.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.933][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.934][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:30.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:30.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.939][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:30.941][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:30.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.943][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.944][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:30.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:30.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.949][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:30.951][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:30.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.953][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.954][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:30.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:30.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:30.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:30.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:30.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:30.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:30.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:30.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:30.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:30.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:30.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:30.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:30.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:30.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:30.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:30.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:30.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:30.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:30.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:30.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:30.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:31.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:31.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:31.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:31.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:31.008][self$createEntryFromContent] Accession numbers: 5525.
biodb.TRACE[2025-08-09 16:05:31.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:31.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:31.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:31.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:31.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:31.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:31.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:31.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:31.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:31.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:31.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:31.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:31.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:31.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:31.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:31.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:31.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:31.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:31.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:31.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:31.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:31.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:31.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:31.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:31.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:31.052][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:05:31.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:31.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:31.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:31.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:31.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:31.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:31.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:31.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:31.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:31.078][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:31.079][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:31.080][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:31.081][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:31.082][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:31.083][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.085][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.087][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:31.088][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.089][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.092][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:31.093][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:31.094][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:31.095][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.096][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.099][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:31.100][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:31.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:31.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:31.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:31.117][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2025-08-09 16:05:31.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:31.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:31.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:31.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:31.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:31.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:31.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:31.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:31.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:31.147][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:31.148][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:31.149][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:31.150][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:31.151][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:31.152][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.154][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.156][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:31.157][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.159][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.161][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:31.162][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:31.163][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:31.164][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.166][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.168][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:31.169][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:31.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:31.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:31.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:31.185][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-09 16:05:31.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:31.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:31.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:31.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:31.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:31.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:31.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:31.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:31.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:31.220][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:31.222][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:31.223][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:31.225][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:31.226][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:31.227][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.228][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.231][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:31.232][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.233][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.236][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:31.237][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:31.238][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:31.239][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.240][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.243][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:31.244][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:31.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:31.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:31.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:31.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:31.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:31.260][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-09 16:05:31.261][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:05:31.262][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:05:31.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:31.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:31.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:31.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:31.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:31.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:31.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:31.280][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:05:31.283][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:31.284][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:31.286][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-08-09 16:05:31.579][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-08-09 16:05:31.874][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:31.876][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content"
biodb.TRACE[2025-08-09 16:05:31.881][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.request"
biodb.DEBUG[2025-08-09 16:05:31.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:31.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:31.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:31.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:31.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:31.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:31.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:31.899][private$loadEntries] Creating entries from ids [1]: "31303".
biodb.DEBUG[2025-08-09 16:05:31.900][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:31.902][cch$loadFileContent] Trying to load 1 files from cache: [1]: "31303".
biodb.TRACE[2025-08-09 16:05:31.904][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:31.905][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:31.906][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:31.908][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:31.909][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:31.910][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:31.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:31.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:31.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:31.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:31.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:31.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:31.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:31.927][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.DEBUG[2025-08-09 16:05:31.930][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:31.931][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:31.933][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.TRACE[2025-08-09 16:05:32.227][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303).
biodb.DEBUG[2025-08-09 16:05:32.715][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:32.718][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.content"
biodb.TRACE[2025-08-09 16:05:32.722][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.request"
biodb.TRACE[2025-08-09 16:05:32.726][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/31303.xml"
biodb.DEBUG[2025-08-09 16:05:32.729][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:32.730][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:32.732][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:32.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:32.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:32.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:32.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:32.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:32.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:32.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:32.749][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:32.751][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:32.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.753][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:32.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:32.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.760][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:32.761][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:32.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.763][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.765][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:32.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:32.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.770][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:32.771][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:32.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.773][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.775][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:32.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:32.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.780][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:32.781][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:32.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.783][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:32.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:32.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.790][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:32.791][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:32.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.794][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.795][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:32.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:32.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.800][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:32.801][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:32.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.804][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.805][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:32.807][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:32.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.809][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.810][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:32.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:32.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.815][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:32.817][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:32.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.819][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:32.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:32.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.825][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:32.827][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:32.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.829][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.831][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:32.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:32.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.836][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:32.837][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:32.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.839][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.841][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:32.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:32.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.846][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:32.847][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:32.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.850][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.851][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:32.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:32.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:32.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:32.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:32.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:32.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:32.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:32.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:32.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:32.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:32.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:32.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:32.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:32.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:32.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:32.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:32.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:32.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:32.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:32.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:32.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:32.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:32.905][self$createEntryFromContent] Accession numbers: 31303.
biodb.TRACE[2025-08-09 16:05:32.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:32.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:32.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:32.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:32.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:32.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:32.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:32.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:32.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:32.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:32.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:32.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:32.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:32.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:32.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:32.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:32.935][private$loadEntries] Creating entries from ids [1]: "37118".
biodb.DEBUG[2025-08-09 16:05:32.936][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:32.938][cch$loadFileContent] Trying to load 1 files from cache: [1]: "37118".
biodb.TRACE[2025-08-09 16:05:32.940][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:32.941][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:32.943][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:32.944][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:32.945][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:32.947][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:32.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:32.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:32.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:32.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:32.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:32.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:32.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:32.964][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.DEBUG[2025-08-09 16:05:32.967][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:32.968][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:32.970][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.TRACE[2025-08-09 16:05:33.272][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118).
biodb.DEBUG[2025-08-09 16:05:33.566][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:33.569][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.content"
biodb.TRACE[2025-08-09 16:05:33.573][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.request"
biodb.TRACE[2025-08-09 16:05:33.577][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37118.xml"
biodb.DEBUG[2025-08-09 16:05:33.579][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:33.580][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:33.582][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:33.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:33.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:33.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:33.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:33.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:33.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:33.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:33.612][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:33.614][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:33.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.616][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:33.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:33.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.623][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:33.624][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:33.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.626][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.628][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:33.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:33.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.633][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:33.634][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:33.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.636][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.638][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:33.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:33.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.643][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:33.644][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:33.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.646][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:33.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:33.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.653][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:33.654][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:33.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.656][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:33.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:33.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.663][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:33.664][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:33.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.667][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.668][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:33.669][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:33.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.672][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.673][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:33.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:33.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.678][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:33.679][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:33.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.682][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:33.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:33.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.688][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:33.689][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:33.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.692][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.693][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:33.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:33.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.698][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:33.699][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:33.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.702][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.703][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:33.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:33.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.708][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:33.709][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:33.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.712][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.713][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:33.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:33.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:33.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:33.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:33.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:33.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:33.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:33.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:33.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:33.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:33.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:33.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:33.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:33.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:33.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:33.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:33.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:33.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:33.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:33.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:33.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:33.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:33.767][self$createEntryFromContent] Accession numbers: 37118.
biodb.TRACE[2025-08-09 16:05:33.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:33.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:33.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:33.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:33.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:33.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:33.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:33.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:33.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:33.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:33.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:33.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:33.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:33.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:33.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:33.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:33.797][private$loadEntries] Creating entries from ids [1]: "39424".
biodb.DEBUG[2025-08-09 16:05:33.798][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:33.800][cch$loadFileContent] Trying to load 1 files from cache: [1]: "39424".
biodb.TRACE[2025-08-09 16:05:33.802][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:33.803][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:33.804][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:33.806][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:33.807][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:33.808][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:33.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:33.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:33.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:33.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:33.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:33.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:33.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:33.825][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.DEBUG[2025-08-09 16:05:33.828][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:33.829][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:33.831][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.TRACE[2025-08-09 16:05:34.121][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424).
biodb.DEBUG[2025-08-09 16:05:34.406][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:34.409][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.content"
biodb.TRACE[2025-08-09 16:05:34.413][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.request"
biodb.TRACE[2025-08-09 16:05:34.417][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/39424.xml"
biodb.DEBUG[2025-08-09 16:05:34.419][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:34.420][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:34.422][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:34.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:34.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:34.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:34.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:34.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:34.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:34.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:34.439][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:34.440][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:34.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.442][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:34.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:34.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.449][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:34.450][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:34.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.452][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.454][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:34.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:34.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.459][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:34.460][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:34.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.462][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.464][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:34.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:34.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.469][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:34.470][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:34.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.472][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.474][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:34.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:34.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.479][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:34.480][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:34.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.482][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:34.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:34.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.488][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:34.490][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:34.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.492][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.493][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:34.495][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:34.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.497][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.499][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:34.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:34.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.503][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:34.505][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:34.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.507][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:34.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:34.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.513][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:34.515][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:34.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.517][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.519][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:34.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:34.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.524][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:34.525][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:34.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.527][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.529][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:34.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:34.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.534][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:34.535][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:34.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.537][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.539][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:34.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:34.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:34.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:34.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:34.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:34.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:34.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:34.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:34.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:34.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:34.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:34.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:34.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:34.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:34.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:34.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:34.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:34.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:34.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:34.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:34.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:34.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:34.602][self$createEntryFromContent] Accession numbers: 39424.
biodb.TRACE[2025-08-09 16:05:34.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:34.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:34.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:34.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:34.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:34.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:34.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:34.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:34.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:34.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:34.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:34.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:34.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:34.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:34.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:34.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:34.632][private$loadEntries] Creating entries from ids [1]: "81767".
biodb.DEBUG[2025-08-09 16:05:34.633][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:34.635][cch$loadFileContent] Trying to load 1 files from cache: [1]: "81767".
biodb.TRACE[2025-08-09 16:05:34.637][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:34.638][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:34.639][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:34.640][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:34.642][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:34.643][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:34.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:34.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:34.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:34.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:34.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:34.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:34.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:34.660][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.DEBUG[2025-08-09 16:05:34.663][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:34.664][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:34.665][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.TRACE[2025-08-09 16:05:34.959][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767).
biodb.DEBUG[2025-08-09 16:05:35.255][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:35.258][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.content"
biodb.TRACE[2025-08-09 16:05:35.262][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.request"
biodb.TRACE[2025-08-09 16:05:35.265][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/81767.xml"
biodb.DEBUG[2025-08-09 16:05:35.268][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:35.269][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:35.270][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:35.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:35.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:35.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:35.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:35.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:35.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:35.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:35.287][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:35.289][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:35.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.291][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:35.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:35.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.297][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:35.299][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:35.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.301][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.303][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:35.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:35.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.307][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:35.309][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:35.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.311][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.312][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:35.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:35.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.317][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:35.319][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:35.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.321][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:35.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:35.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.328][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:35.329][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:35.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.331][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.333][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:35.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:35.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.338][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:35.339][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:35.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.341][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.343][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:35.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:35.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.348][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:35.349][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:35.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.351][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.353][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:35.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:35.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.357][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.359][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.361][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.368][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:35.369][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:35.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.371][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.373][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:35.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:35.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.378][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:35.379][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:35.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.381][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.383][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:35.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:35.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.388][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:35.389][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:35.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.391][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.393][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:35.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:35.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:35.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:35.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:35.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:35.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:35.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:35.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:35.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:35.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:35.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:35.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:35.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:35.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:35.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:35.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:35.446][self$createEntryFromContent] Accession numbers: 81767.
biodb.TRACE[2025-08-09 16:05:35.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:35.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:35.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:35.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:35.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:35.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:35.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:35.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:35.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:35.490][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:05:35.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:35.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:35.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:35.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:35.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:35.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:35.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:35.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.516][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:35.517][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:35.518][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:35.519][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:35.520][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:35.522][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.523][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.525][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.526][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.528][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.530][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.531][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:35.532][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:35.533][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.535][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.537][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.538][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:35.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.554][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2025-08-09 16:05:35.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:35.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:35.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:35.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:35.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:35.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:35.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:35.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.579][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:35.580][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:35.581][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:35.582][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:35.584][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:35.585][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.586][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.588][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.590][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.591][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.603][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.605][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:35.607][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:35.608][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.609][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.612][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.613][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:35.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.629][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2025-08-09 16:05:35.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:35.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:35.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:35.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:35.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:35.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:35.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:35.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.654][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:35.655][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:35.656][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:35.658][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:35.659][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:35.660][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.661][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.664][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.665][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.666][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.668][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.669][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:35.671][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:35.672][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.673][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.675][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.677][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:35.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.693][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2025-08-09 16:05:35.694][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:05:35.695][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:05:35.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:35.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:35.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:35.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:35.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:35.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:35.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:35.738][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:05:35.742][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:05:35.744][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-08-09 16:05:35.745][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:05:35.748][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-08-09 16:05:35.751][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:05:35.755][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:05:35.756][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-08-09 16:05:35.758][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:05:35.760][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-08-09 16:05:35.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:35.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:35.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:35.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:35.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:35.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:35.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:35.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:35.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:35.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:35.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:35.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:35.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:35.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:35.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:35.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:35.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:35.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:35.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:35.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:35.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:35.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:35.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:35.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:35.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:35.849][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:05:35.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:35.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:35.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:35.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:35.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:35.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:35.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:35.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.874][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:35.876][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:35.877][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:35.878][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:35.879][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:35.880][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.882][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.884][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.885][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.886][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.889][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.890][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:35.891][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:35.892][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.894][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.896][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.897][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:35.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.913][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-09 16:05:35.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:35.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:35.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:35.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:35.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:35.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:35.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:35.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.939][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:35.940][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:35.941][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:35.942][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:35.943][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:35.945][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.946][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.948][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.949][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.951][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.953][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.954][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:35.956][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:35.957][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.958][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.960][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.961][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:35.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.978][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-09 16:05:35.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:35.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:35.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:35.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:35.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:35.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:35.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:35.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:35.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:35.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:35.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.003][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:36.004][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:36.005][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:36.006][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:36.007][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:36.008][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.010][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.012][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.013][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.014][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.017][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.018][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:36.019][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:36.020][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.022][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.032][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.034][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:36.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.051][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-09 16:05:36.053][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:05:36.054][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:05:36.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:36.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:36.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:36.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:36.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:36.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:36.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:36.072][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:05:36.076][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:05:36.077][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-08-09 16:05:36.079][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:05:36.081][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-08-09 16:05:36.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:36.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:36.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:36.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:36.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:36.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:36.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:36.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:36.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:36.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:36.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:36.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:36.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:36.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:36.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:36.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:36.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:36.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:36.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:36.151][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:36.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:36.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:36.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:36.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:36.175][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:05:36.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:36.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:36.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:36.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:36.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:36.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:36.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:36.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.201][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:36.202][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:36.203][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:36.205][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:36.206][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:36.207][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.208][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.211][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.212][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.213][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.215][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.217][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:36.218][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:36.219][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.220][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.222][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.224][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:36.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.240][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-09 16:05:36.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:36.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:36.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:36.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:36.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:36.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:36.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:36.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.265][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:36.266][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:36.267][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:36.268][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:36.270][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:36.271][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.272][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.274][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.276][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.277][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.279][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.280][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:36.282][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:36.283][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.284][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.286][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.288][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:36.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.304][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-08-09 16:05:36.305][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:36.306][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:36.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:36.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:36.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:36.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:36.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:36.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.329][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:36.330][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:36.332][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:36.333][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:36.334][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:36.335][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.336][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.339][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.340][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.341][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.343][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.345][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:36.346][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:36.347][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.348][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.351][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.352][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:36.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.368][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-08-09 16:05:36.369][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:05:36.370][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:05:36.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:36.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:36.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:36.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:36.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:36.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:36.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:36.388][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:05:36.392][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:05:36.393][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-08-09 16:05:36.395][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:05:36.397][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-08-09 16:05:36.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:36.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:36.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:36.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:36.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:36.412][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:36.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:36.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:36.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:36.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:36.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:36.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:36.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:36.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:36.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:36.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:36.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:36.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:36.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:36.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:36.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:36.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:36.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:36.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:36.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:36.495][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:05:36.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:36.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:36.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:36.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:36.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:36.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:36.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:36.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.521][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:36.522][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:36.523][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:36.524][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:36.526][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:36.527][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.528][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.530][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.532][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.533][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.535][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.536][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:36.538][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:36.539][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.540][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.542][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.544][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:36.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.560][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-08-09 16:05:36.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:36.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:36.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:36.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:36.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:36.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:36.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:36.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.585][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:36.586][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:36.587][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:36.588][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:36.589][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:36.590][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.592][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.594][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.595][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.597][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.599][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.600][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:36.602][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:36.603][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.604][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.606][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.608][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:36.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.624][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-08-09 16:05:36.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:36.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:36.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:36.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:36.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:36.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:36.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:36.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.649][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:36.650][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:36.651][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:36.653][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:36.654][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:36.655][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.656][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.658][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.660][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.661][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.663][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.664][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:36.666][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:36.667][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.668][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.670][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.671][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:36.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:36.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:36.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:36.687][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-08-09 16:05:36.689][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:05:36.690][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:05:36.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:36.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:36.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:36.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:36.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:36.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:36.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:36.734][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:05:36.738][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:36.739][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:36.741][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-08-09 16:05:37.029][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-08-09 16:05:37.326][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:37.329][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content"
biodb.TRACE[2025-08-09 16:05:37.334][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.request"
biodb.DEBUG[2025-08-09 16:05:37.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:37.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:37.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:37.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:37.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:37.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:37.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:37.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:37.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:37.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:37.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:37.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:37.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:37.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:37.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:37.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:37.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:37.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:37.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:37.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:37.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:37.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:37.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:37.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:37.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:37.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:37.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:37.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:37.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:37.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:37.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:37.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:37.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:37.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:37.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:37.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:37.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:37.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:37.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:37.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:37.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:37.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:37.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:37.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:37.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:37.411][private$loadEntries] Creating entries from ids [1]: "17813".
biodb.DEBUG[2025-08-09 16:05:37.412][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:37.414][cch$loadFileContent] Trying to load 1 files from cache: [1]: "17813".
biodb.TRACE[2025-08-09 16:05:37.416][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:37.417][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:37.418][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:37.420][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:37.421][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:37.422][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:37.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:37.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:37.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:37.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:37.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:37.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:37.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:37.439][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.DEBUG[2025-08-09 16:05:37.442][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:37.443][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:37.445][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.TRACE[2025-08-09 16:05:37.745][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813).
biodb.DEBUG[2025-08-09 16:05:38.040][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:38.043][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.content"
biodb.TRACE[2025-08-09 16:05:38.047][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.request"
biodb.TRACE[2025-08-09 16:05:38.051][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/17813.xml"
biodb.DEBUG[2025-08-09 16:05:38.053][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:38.055][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:38.056][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:38.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:38.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:38.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:38.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:38.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:38.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:38.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:38.086][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:38.087][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:38.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.090][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:38.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:38.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.096][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:38.097][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:38.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.099][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.101][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:38.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:38.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.106][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:38.107][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:38.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.109][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.111][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:38.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:38.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.116][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:38.117][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:38.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.120][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:38.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:38.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.126][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:38.127][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:38.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.129][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:38.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:38.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.136][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:38.137][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:38.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.139][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.141][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:38.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:38.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.146][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:38.147][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:38.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.149][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.151][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:38.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:38.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.156][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:38.157][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:38.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.159][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:38.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:38.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.167][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:38.168][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:38.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.172][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.174][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:38.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:38.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.179][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:38.180][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:38.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.183][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.184][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:38.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:38.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.189][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:38.190][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:38.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.193][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.194][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:38.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:38.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:38.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:38.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:38.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:38.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:38.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:38.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:38.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:38.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:38.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:38.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:38.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:38.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:38.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:38.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:38.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:38.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:38.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:38.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:38.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:38.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:38.248][self$createEntryFromContent] Accession numbers: 17813.
biodb.TRACE[2025-08-09 16:05:38.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:38.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:38.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:38.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:38.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:38.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:38.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:38.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:38.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:38.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:38.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:38.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:38.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:38.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:38.277][private$loadEntries] Creating entries from ids [1]: "30109".
biodb.DEBUG[2025-08-09 16:05:38.278][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:38.280][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30109".
biodb.TRACE[2025-08-09 16:05:38.282][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:38.283][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:38.285][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:38.286][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:38.287][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:38.288][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:38.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:38.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:38.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:38.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:38.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:38.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:38.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:38.305][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.DEBUG[2025-08-09 16:05:38.308][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:38.309][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:38.311][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.TRACE[2025-08-09 16:05:38.603][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109).
biodb.DEBUG[2025-08-09 16:05:38.902][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:38.905][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.content"
biodb.TRACE[2025-08-09 16:05:38.909][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.request"
biodb.TRACE[2025-08-09 16:05:38.913][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30109.xml"
biodb.DEBUG[2025-08-09 16:05:38.915][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:38.916][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:38.918][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:38.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:38.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:38.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:38.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:38.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:38.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:38.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:38.935][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:38.936][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:38.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.939][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:38.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:38.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.945][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:38.946][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:38.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.949][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.950][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:38.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:38.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.955][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:38.956][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:38.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.959][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.960][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:38.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:38.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.965][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:38.966][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:38.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.969][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.970][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:38.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:38.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.975][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:38.976][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:38.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.979][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.980][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:38.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:38.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.985][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:38.987][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:38.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.989][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.990][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:38.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:38.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:38.995][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:38.997][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:38.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:38.999][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.000][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:39.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:39.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.005][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:39.007][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:39.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.009][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:39.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:39.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.015][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:39.017][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:39.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.019][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.021][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:39.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:39.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.026][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:39.027][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:39.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.029][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.031][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:39.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:39.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.036][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:39.037][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:39.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.039][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.041][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:39.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:39.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:39.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:39.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:39.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:39.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:39.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:39.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:39.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:39.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:39.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:39.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:39.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:39.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:39.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:39.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:39.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:39.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:39.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:39.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:39.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:39.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:39.105][self$createEntryFromContent] Accession numbers: 30109.
biodb.TRACE[2025-08-09 16:05:39.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:39.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:39.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:39.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:39.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:39.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:39.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:39.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:39.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:39.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:39.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:39.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:39.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:39.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:39.136][private$loadEntries] Creating entries from ids [1]: "33275".
biodb.DEBUG[2025-08-09 16:05:39.138][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:39.141][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33275".
biodb.TRACE[2025-08-09 16:05:39.143][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:39.145][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:39.148][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:39.150][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:39.152][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:39.153][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:39.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:39.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:39.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:39.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:39.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:39.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:39.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:39.173][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.DEBUG[2025-08-09 16:05:39.176][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:39.177][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:39.179][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.TRACE[2025-08-09 16:05:39.476][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275).
biodb.DEBUG[2025-08-09 16:05:39.775][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:39.778][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.content"
biodb.TRACE[2025-08-09 16:05:39.856][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.request"
biodb.TRACE[2025-08-09 16:05:39.860][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33275.xml"
biodb.DEBUG[2025-08-09 16:05:39.862][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:39.863][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:39.865][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:39.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:39.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:39.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:39.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:39.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:39.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:39.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:39.883][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:39.884][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:39.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.886][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:39.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:39.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.893][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:39.894][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:39.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.896][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.898][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:39.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:39.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.903][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:39.904][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:39.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.907][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.908][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:39.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:39.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.913][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:39.914][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:39.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.917][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.918][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:39.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:39.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.923][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:39.924][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:39.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.927][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:39.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:39.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.933][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:39.934][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:39.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.937][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.938][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:39.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:39.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.943][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:39.944][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:39.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.947][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.948][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:39.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:39.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.953][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:39.954][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:39.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.957][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:39.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:39.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.963][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:39.964][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:39.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.967][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.968][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:39.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:39.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.973][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:39.975][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:39.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.977][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.978][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:39.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:39.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.983][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:39.985][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:39.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.987][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.988][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:39.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:39.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:39.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:39.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:39.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:39.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:40.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:40.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:40.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:40.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:40.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:40.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:40.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:40.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:40.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:40.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:40.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:40.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:40.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:40.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:40.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:40.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:40.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:40.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:40.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:40.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:40.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:40.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:40.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:40.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:40.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:40.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:40.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:40.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:40.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:40.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:40.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:40.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:40.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:40.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:40.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:40.042][self$createEntryFromContent] Accession numbers: 33275.
biodb.TRACE[2025-08-09 16:05:40.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:40.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:40.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:40.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:40.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:40.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:40.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:40.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:40.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:40.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:40.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:40.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:40.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:40.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:40.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:40.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:40.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:40.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:40.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:40.072][private$loadEntries] Creating entries from ids [1]: "33277".
biodb.DEBUG[2025-08-09 16:05:40.073][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:40.075][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33277".
biodb.TRACE[2025-08-09 16:05:40.077][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:40.078][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:40.080][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:40.081][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:40.082][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:40.083][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:40.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:40.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:40.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:40.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:40.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:40.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:40.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:40.100][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.DEBUG[2025-08-09 16:05:40.103][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:40.105][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:40.106][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.TRACE[2025-08-09 16:05:40.399][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277).
biodb.DEBUG[2025-08-09 16:05:40.697][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:40.700][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.content"
biodb.TRACE[2025-08-09 16:05:40.750][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.request"
biodb.TRACE[2025-08-09 16:05:40.754][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33277.xml"
biodb.DEBUG[2025-08-09 16:05:40.891][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:40.893][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:40.894][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:40.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:40.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:40.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:40.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:40.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:40.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:40.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:40.911][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:40.913][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:40.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:40.915][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:40.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:40.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:40.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:40.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:40.921][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:40.923][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:40.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:40.925][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:40.926][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:40.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:40.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:40.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:40.932][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:40.933][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:40.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:40.935][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:40.937][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:40.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:40.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:40.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:40.942][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:40.954][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:40.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:40.957][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:40.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:40.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:40.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:40.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:40.964][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:40.965][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:40.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:40.968][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:40.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:40.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:40.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:40.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:40.974][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:40.975][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:40.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:40.978][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:40.979][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:40.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:40.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:40.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:40.984][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:40.985][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:40.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:40.987][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:40.989][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:40.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:40.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:40.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:40.994][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:40.995][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:40.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:40.997][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:40.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:41.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:41.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:41.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:41.004][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:41.005][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:41.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:41.007][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:41.009][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:41.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:41.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:41.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:41.014][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:41.015][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:41.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:41.018][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:41.019][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:41.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:41.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:41.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:41.024][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:41.025][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:41.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:41.027][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:41.029][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:41.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:41.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:41.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:41.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:41.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:41.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:41.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:41.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:41.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:41.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:41.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:41.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:41.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:41.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:41.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:41.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:41.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:41.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:41.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:41.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:41.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:41.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:41.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:41.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:41.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:41.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:41.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:41.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:41.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:41.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:41.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:41.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:41.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:41.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:41.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:41.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:41.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:41.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:41.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:41.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:41.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:41.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:41.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:41.082][self$createEntryFromContent] Accession numbers: 33277.
biodb.TRACE[2025-08-09 16:05:41.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:41.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:41.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:41.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:41.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:41.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:41.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:41.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:41.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:41.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:41.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:41.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:41.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:41.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:41.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:41.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:41.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:41.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:41.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:41.112][private$loadEntries] Creating entries from ids [1]: "52421".
biodb.DEBUG[2025-08-09 16:05:41.113][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:41.115][cch$loadFileContent] Trying to load 1 files from cache: [1]: "52421".
biodb.TRACE[2025-08-09 16:05:41.117][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:41.118][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:41.120][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:41.121][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:41.122][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:41.123][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:41.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:41.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:41.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:41.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:41.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:41.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:41.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:41.140][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.DEBUG[2025-08-09 16:05:41.143][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:41.145][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:41.146][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.TRACE[2025-08-09 16:05:41.454][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421).
biodb.DEBUG[2025-08-09 16:05:41.753][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:41.756][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.content"
biodb.TRACE[2025-08-09 16:05:43.066][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.request"
biodb.TRACE[2025-08-09 16:05:43.070][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52421.xml"
biodb.DEBUG[2025-08-09 16:05:43.072][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:43.074][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:43.078][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:43.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:43.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:43.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:43.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:43.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:43.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:43.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:43.096][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:43.098][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:43.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.100][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:43.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:43.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.107][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:43.108][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:43.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.111][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.112][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:43.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:43.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.117][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:43.118][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:43.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.121][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.122][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:43.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:43.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.127][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:43.128][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:43.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.131][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:43.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:43.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.137][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:43.138][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:43.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.141][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:43.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:43.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.147][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:43.148][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:43.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.151][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.152][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:43.154][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:43.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.156][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.157][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:43.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:43.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.163][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:43.165][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:43.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.169][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:43.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:43.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.178][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:43.179][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:43.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.182][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.183][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:43.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:43.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.188][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:43.190][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:43.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.192][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.193][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:43.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:43.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.198][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:43.200][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:43.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.202][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.203][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:43.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:43.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:43.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:43.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:43.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:43.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:43.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:43.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:43.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:43.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:43.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:43.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:43.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:43.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:43.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:43.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:43.258][self$createEntryFromContent] Accession numbers: 52421.
biodb.TRACE[2025-08-09 16:05:43.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:43.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:43.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:43.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:43.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:43.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:43.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:43.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:43.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:43.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:43.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:43.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:43.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:43.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:43.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:43.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:43.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:43.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:43.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:43.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:43.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:43.313][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:05:43.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:43.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:43.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:43.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:43.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:43.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:43.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:43.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.339][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:43.340][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:43.341][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:43.342][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:43.343][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:43.344][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.346][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.348][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.349][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.350][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.353][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.354][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:43.355][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:43.356][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.358][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.360][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.361][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:43.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.377][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-09 16:05:43.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:43.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:43.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:43.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:43.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:43.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:43.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:43.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.402][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:43.403][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:43.404][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:43.405][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:43.406][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:43.408][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.409][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.411][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.412][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.414][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.416][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.417][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:43.418][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:43.419][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.421][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.423][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.424][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:43.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.440][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-09 16:05:43.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:43.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:43.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:43.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:43.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:43.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:43.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:43.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.465][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:43.466][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:05:43.468][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:05:43.469][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:05:43.470][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:43.471][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.472][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.475][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.476][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.477][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.479][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.481][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:43.482][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:05:43.483][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.484][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.486][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.488][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:05:43.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:43.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:43.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:43.504][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-09 16:05:43.505][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:05:43.506][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:05:43.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:43.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:43.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:43.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:43.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:43.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:43.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:43.524][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:05:43.527][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:43.529][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:43.531][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-08-09 16:05:43.838][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-08-09 16:05:44.272][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:44.275][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content"
biodb.TRACE[2025-08-09 16:05:44.280][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.request"
biodb.DEBUG[2025-08-09 16:05:44.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:44.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:44.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:44.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:44.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:44.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:44.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:44.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:44.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:44.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:44.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:44.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:44.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:44.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:44.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:44.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:44.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:44.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:44.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:44.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:44.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:44.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:44.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:44.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:44.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:44.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:44.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:44.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:44.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:44.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:44.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:44.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:44.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:44.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:44.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:44.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:44.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:44.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:44.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:44.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:44.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:44.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:44.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:44.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:44.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:44.360][private$loadEntries] Creating entries from ids [1]: "65567".
biodb.DEBUG[2025-08-09 16:05:44.361][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:44.363][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65567".
biodb.TRACE[2025-08-09 16:05:44.365][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:44.366][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:44.367][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:44.369][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:44.370][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:44.371][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:44.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:44.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:44.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:44.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:44.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:44.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:44.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:44.388][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.DEBUG[2025-08-09 16:05:44.391][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:44.392][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:44.394][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.TRACE[2025-08-09 16:05:44.696][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567).
biodb.DEBUG[2025-08-09 16:05:44.977][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:44.980][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.content"
biodb.TRACE[2025-08-09 16:05:44.984][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.request"
biodb.TRACE[2025-08-09 16:05:44.988][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65567.xml"
biodb.DEBUG[2025-08-09 16:05:44.990][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:44.992][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:44.993][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:44.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:44.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:44.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:45.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:45.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:45.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:45.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:45.010][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:45.012][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:45.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.014][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:45.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:45.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.020][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:45.032][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:45.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.035][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.037][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:45.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:45.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.042][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:45.044][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:45.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.046][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.047][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:45.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:45.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.052][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:45.054][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:45.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.056][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:45.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:45.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.062][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:45.064][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:45.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.066][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.067][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:45.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:45.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.072][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:45.074][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:45.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.076][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.077][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:45.079][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:45.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.081][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.082][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:45.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:45.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.087][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:45.088][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:45.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.091][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:45.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:45.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.097][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:45.098][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:45.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.101][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.102][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:45.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:45.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.107][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:45.108][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:45.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.111][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.112][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:45.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:45.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.117][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:45.118][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:45.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.121][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.122][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:45.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:45.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:45.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:45.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:45.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:45.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:45.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:45.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:45.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:45.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:45.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:45.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:45.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:45.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:45.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:45.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:45.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:45.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:45.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:45.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:45.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:45.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:45.178][self$createEntryFromContent] Accession numbers: 65567.
biodb.TRACE[2025-08-09 16:05:45.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:45.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:45.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:45.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:45.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:45.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:45.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:45.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:45.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:45.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:45.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:45.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:45.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:45.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:45.208][private$loadEntries] Creating entries from ids [1]: "65576".
biodb.DEBUG[2025-08-09 16:05:45.209][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:45.211][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65576".
biodb.TRACE[2025-08-09 16:05:45.213][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:45.214][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:45.215][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:45.216][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:45.218][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:45.219][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:45.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:45.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:45.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:45.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:45.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:45.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:45.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:45.236][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.DEBUG[2025-08-09 16:05:45.239][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:45.240][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:45.242][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.TRACE[2025-08-09 16:05:45.549][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576).
biodb.DEBUG[2025-08-09 16:05:45.841][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:45.844][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.content"
biodb.TRACE[2025-08-09 16:05:45.848][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.request"
biodb.TRACE[2025-08-09 16:05:45.851][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65576.xml"
biodb.DEBUG[2025-08-09 16:05:45.853][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:45.855][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:45.856][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:45.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:45.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:45.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:45.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:45.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:45.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:45.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:45.874][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:45.875][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:45.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.877][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:45.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:45.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.884][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:45.885][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:45.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.887][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.889][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:45.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:45.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.894][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:45.895][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:45.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.897][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.899][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:45.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:45.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.904][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:45.905][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:45.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.907][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:45.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:45.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.914][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:45.915][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:45.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.917][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:45.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:45.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.923][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:45.925][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:45.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.927][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.928][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:45.930][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:45.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.932][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.933][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:45.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:45.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.938][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:45.940][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:45.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.942][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:45.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:45.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.948][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:45.950][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:45.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.952][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.953][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:45.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:45.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.958][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:45.960][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:45.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.962][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.963][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:45.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:45.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.968][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:45.970][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:45.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.972][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.973][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:45.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:45.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:45.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:45.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:45.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:45.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:45.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:45.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:45.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:45.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:45.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:45.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:45.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:46.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:46.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:46.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:46.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:46.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:46.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:46.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:46.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:46.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:46.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:46.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:46.027][self$createEntryFromContent] Accession numbers: 65576.
biodb.TRACE[2025-08-09 16:05:46.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:46.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:46.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:46.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:46.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:46.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:46.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:46.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:46.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:46.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:46.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:46.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:46.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:46.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:46.067][private$loadEntries] Creating entries from ids [1]: "66352".
biodb.DEBUG[2025-08-09 16:05:46.068][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:46.070][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66352".
biodb.TRACE[2025-08-09 16:05:46.072][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:46.073][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:46.075][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:46.076][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:46.077][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:46.078][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:46.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:46.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:46.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:46.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:46.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:46.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:46.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:46.095][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.DEBUG[2025-08-09 16:05:46.098][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:46.099][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:46.101][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.TRACE[2025-08-09 16:05:46.391][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352).
biodb.DEBUG[2025-08-09 16:05:46.689][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:46.692][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.content"
biodb.TRACE[2025-08-09 16:05:46.697][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.request"
biodb.TRACE[2025-08-09 16:05:46.700][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66352.xml"
biodb.DEBUG[2025-08-09 16:05:46.703][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:46.704][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:46.706][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:46.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:46.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:46.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:46.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:46.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:46.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:46.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:46.723][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:46.724][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:46.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.726][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:46.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:46.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.733][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:46.734][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:46.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.736][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.738][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:46.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:46.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.743][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:46.744][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:46.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.746][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.748][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:46.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:46.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.753][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:46.754][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:46.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.756][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:46.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:46.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.763][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:46.764][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:46.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.766][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.768][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:46.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:46.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.773][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:46.774][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:46.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.777][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.778][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:46.779][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:46.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.782][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.783][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:46.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:46.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.788][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:46.790][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:46.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.792][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:46.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:46.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.798][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:46.800][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:46.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.802][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.804][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:46.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:46.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.809][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:46.810][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:46.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.812][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.814][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:46.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:46.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.819][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:46.820][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:46.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.822][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.824][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:46.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:46.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:46.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:46.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:46.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:46.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:46.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:46.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:46.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:46.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:46.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:46.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:46.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:46.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:46.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:46.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:46.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:46.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:46.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:46.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:46.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:46.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:46.877][self$createEntryFromContent] Accession numbers: 66352.
biodb.TRACE[2025-08-09 16:05:46.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:46.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:46.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:46.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:46.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:46.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:46.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:46.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:46.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:46.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:46.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:46.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:46.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:46.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:46.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:46.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:46.907][private$loadEntries] Creating entries from ids [1]: "67567".
biodb.DEBUG[2025-08-09 16:05:46.908][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:46.910][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67567".
biodb.TRACE[2025-08-09 16:05:46.912][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:46.913][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:46.914][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:46.916][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:46.917][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:46.918][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:46.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:46.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:46.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:46.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:46.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:46.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:46.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:46.935][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.DEBUG[2025-08-09 16:05:46.939][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:46.940][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:46.941][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.TRACE[2025-08-09 16:05:47.233][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567).
biodb.DEBUG[2025-08-09 16:05:47.542][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:47.545][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.content"
biodb.TRACE[2025-08-09 16:05:47.549][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.request"
biodb.TRACE[2025-08-09 16:05:47.553][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67567.xml"
biodb.DEBUG[2025-08-09 16:05:47.555][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:47.556][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:47.558][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:47.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:47.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:47.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:47.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:47.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:47.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:47.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:47.574][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:47.576][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:47.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.578][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:47.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:47.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.585][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:47.586][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:47.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.588][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.590][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:47.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:47.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.594][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:47.596][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:47.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.598][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.600][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:47.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:47.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.604][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:47.606][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:47.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.608][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:47.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:47.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.614][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:47.616][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:47.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.618][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:47.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:47.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.624][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:47.626][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:47.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.628][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.629][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:47.631][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:47.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.633][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.634][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:47.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:47.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.650][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:47.652][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:47.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.654][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:47.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:47.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.661][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:47.662][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:47.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.665][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.666][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:47.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:47.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.671][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:47.672][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:47.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.675][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.676][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:47.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:47.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.681][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:47.682][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:47.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.684][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.686][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:47.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:47.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:47.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:47.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:47.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:47.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:47.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:47.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:47.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:47.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:47.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:47.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:47.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:47.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:47.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:47.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:47.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:47.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:47.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:47.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:47.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:47.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:47.739][self$createEntryFromContent] Accession numbers: 67567.
biodb.TRACE[2025-08-09 16:05:47.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:47.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:47.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:47.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:47.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:47.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:47.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:47.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:47.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:47.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:47.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:47.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:47.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:47.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:47.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:47.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:47.768][private$loadEntries] Creating entries from ids [1]: "67693".
biodb.DEBUG[2025-08-09 16:05:47.769][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:47.771][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67693".
biodb.TRACE[2025-08-09 16:05:47.773][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:47.774][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:47.775][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:47.777][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:47.778][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:47.779][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:47.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:47.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:47.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:47.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:47.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:47.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:47.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:47.796][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.DEBUG[2025-08-09 16:05:47.799][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:47.800][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:47.802][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.TRACE[2025-08-09 16:05:48.096][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693).
biodb.DEBUG[2025-08-09 16:05:48.394][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:48.397][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.content"
biodb.TRACE[2025-08-09 16:05:48.401][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.request"
biodb.TRACE[2025-08-09 16:05:48.404][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67693.xml"
biodb.DEBUG[2025-08-09 16:05:48.407][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:48.408][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:48.410][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:48.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:48.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:48.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:48.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:48.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:48.423][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:48.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:48.426][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:48.428][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:48.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.430][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:48.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:48.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.436][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:48.438][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:48.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.440][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.441][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:48.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:48.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.446][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:48.448][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:48.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.450][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.451][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:48.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:48.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.456][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:48.457][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:48.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.460][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:48.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:48.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.466][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:48.467][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:48.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.469][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.471][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:48.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:48.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.476][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:48.477][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:48.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.479][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.481][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:48.482][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:48.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.484][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.486][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:48.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:48.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.491][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:48.492][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:48.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.494][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:48.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:48.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.501][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:48.502][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:48.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.504][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.506][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:48.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:48.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.511][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:48.512][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:48.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.514][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.516][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:48.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:48.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.521][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:48.522][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:48.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.524][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.526][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:48.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:48.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:48.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:48.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:48.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:48.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:48.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:48.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:48.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:48.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:48.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:48.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:48.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:48.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:48.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:48.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:48.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:48.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:48.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:48.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:48.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:48.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:48.579][self$createEntryFromContent] Accession numbers: 67693.
biodb.TRACE[2025-08-09 16:05:48.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:48.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:48.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:48.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:48.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:48.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:48.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:48.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:48.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:48.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:48.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:48.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:48.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:48.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:48.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:48.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:48.609][private$loadEntries] Creating entries from ids [1]: "67700".
biodb.DEBUG[2025-08-09 16:05:48.610][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:48.612][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67700".
biodb.TRACE[2025-08-09 16:05:48.613][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:48.615][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:48.616][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:48.617][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:48.619][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:48.620][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:48.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:48.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:48.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:48.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:48.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:48.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:48.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:48.636][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.DEBUG[2025-08-09 16:05:48.639][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:48.650][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:48.652][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.TRACE[2025-08-09 16:05:48.956][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700).
biodb.DEBUG[2025-08-09 16:05:49.246][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:49.249][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.content"
biodb.TRACE[2025-08-09 16:05:49.254][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.request"
biodb.TRACE[2025-08-09 16:05:49.257][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67700.xml"
biodb.DEBUG[2025-08-09 16:05:49.259][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:49.261][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:49.262][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:49.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:49.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:49.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:49.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:49.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:49.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:49.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:49.279][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:49.281][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:49.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.283][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:49.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:49.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.289][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:49.291][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:49.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.293][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.295][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:49.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:49.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.300][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:49.301][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:49.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.303][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.305][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:49.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:49.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.310][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:49.311][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:49.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.313][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:49.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:49.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.320][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:49.321][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:49.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.323][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:49.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:49.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.330][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:49.331][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:49.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.333][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.335][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:49.336][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:49.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.338][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.340][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:49.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:49.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.345][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:49.346][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:49.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.348][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:49.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:49.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.355][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:49.356][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:49.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.359][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.360][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:49.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:49.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.365][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:49.367][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:49.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.369][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.370][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:49.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:49.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.375][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:49.377][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:49.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.379][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.380][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:49.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:49.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:49.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:49.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:49.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:49.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:49.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:49.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:49.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:49.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:49.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:49.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:49.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:49.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:49.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:49.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:49.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:49.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:49.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:49.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:49.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:49.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:49.435][self$createEntryFromContent] Accession numbers: 67700.
biodb.TRACE[2025-08-09 16:05:49.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:49.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:49.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:49.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:49.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:49.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:49.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:49.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:49.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:49.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:49.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:49.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:49.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:49.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:49.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:49.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:49.465][private$loadEntries] Creating entries from ids [1]: "67701".
biodb.DEBUG[2025-08-09 16:05:49.466][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:49.468][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67701".
biodb.TRACE[2025-08-09 16:05:49.469][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:49.471][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:49.472][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:49.473][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:49.475][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:49.476][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:49.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:49.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:49.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:49.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:49.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:49.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:49.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:49.493][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.DEBUG[2025-08-09 16:05:49.496][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:49.498][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:49.499][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.TRACE[2025-08-09 16:05:49.785][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701).
biodb.DEBUG[2025-08-09 16:05:50.072][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:50.075][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.content"
biodb.TRACE[2025-08-09 16:05:50.080][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.request"
biodb.TRACE[2025-08-09 16:05:50.083][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67701.xml"
biodb.DEBUG[2025-08-09 16:05:50.085][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:50.087][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:50.088][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:50.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:50.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:50.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:50.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:50.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:50.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:50.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:50.106][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:50.107][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:50.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.109][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:50.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:50.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.116][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:50.117][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:50.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.120][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.121][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:50.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:50.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.126][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:50.127][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:50.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.130][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.131][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:50.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:50.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.136][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:50.137][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:50.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.140][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.141][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:50.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:50.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.146][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:50.148][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:50.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.150][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.151][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:50.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:50.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.157][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:50.158][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:50.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.160][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.162][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:50.163][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:50.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.165][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.167][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:50.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:50.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.172][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:50.173][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:50.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.176][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:50.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:50.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.182][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:50.183][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:50.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.186][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.187][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:50.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:50.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.192][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:50.194][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:50.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.196][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.197][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:50.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:50.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.202][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:50.204][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:50.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.206][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.207][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:50.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:50.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:50.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:50.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:50.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:50.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:50.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:50.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:50.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:50.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:50.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:50.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:50.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:50.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:50.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:50.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:50.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:50.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:50.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:50.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:50.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:50.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:50.274][self$createEntryFromContent] Accession numbers: 67701.
biodb.TRACE[2025-08-09 16:05:50.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:50.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:50.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:50.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:50.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:50.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:50.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:50.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:50.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:50.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:50.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:50.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:50.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:50.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:50.304][private$loadEntries] Creating entries from ids [1]: "67705".
biodb.DEBUG[2025-08-09 16:05:50.305][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:50.307][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67705".
biodb.TRACE[2025-08-09 16:05:50.309][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:50.310][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:50.311][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:50.313][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:50.314][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:50.315][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:50.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:50.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:50.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:50.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:50.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:50.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:50.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:50.332][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.DEBUG[2025-08-09 16:05:50.335][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:50.337][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:50.338][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.TRACE[2025-08-09 16:05:50.655][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705).
biodb.DEBUG[2025-08-09 16:05:50.944][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:50.947][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.content"
biodb.TRACE[2025-08-09 16:05:50.951][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.request"
biodb.TRACE[2025-08-09 16:05:50.955][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67705.xml"
biodb.DEBUG[2025-08-09 16:05:50.957][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:50.958][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:50.960][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:50.962][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:50.963][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:50.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:50.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:50.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:50.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:50.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:50.977][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:50.978][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:50.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.981][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:50.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:50.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.987][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:50.988][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:50.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.991][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.992][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:50.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:50.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:50.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:50.997][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:50.998][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:50.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:51.001][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:51.002][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:51.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:51.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:51.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:51.007][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:51.008][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:51.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:51.011][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:51.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:51.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:51.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:51.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:51.017][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:51.018][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:51.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:51.021][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:51.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:51.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:51.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:51.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:51.027][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:51.028][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:51.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:51.031][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:51.032][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:51.033][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:51.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:51.036][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:51.037][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:51.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:51.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:51.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:51.042][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:51.046][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:51.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:51.049][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:51.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:51.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:51.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:51.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:51.055][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:51.056][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:51.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:51.059][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:51.060][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:51.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:51.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:51.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:51.065][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:51.067][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:51.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:51.069][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:51.070][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:51.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:51.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:51.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:51.076][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:51.077][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:51.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:51.079][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:51.081][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:51.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:51.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:51.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:51.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:51.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:51.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:51.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:51.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:51.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:51.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:51.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:51.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:51.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:51.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:51.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:51.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:51.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:51.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:51.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:51.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:51.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:51.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:51.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:51.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:51.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:51.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:51.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:51.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:51.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:51.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:51.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:51.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:51.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:51.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:51.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:51.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:51.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:51.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:51.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:51.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:51.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:51.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:51.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:51.134][self$createEntryFromContent] Accession numbers: 67705.
biodb.TRACE[2025-08-09 16:05:51.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:51.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:51.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:51.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:51.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:51.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:51.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:51.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:51.145][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:51.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:51.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:51.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:51.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:51.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:51.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:51.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:51.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:51.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:51.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:51.169][private$loadEntries] Creating entries from ids [1]: "75265".
biodb.DEBUG[2025-08-09 16:05:51.171][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:51.173][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75265".
biodb.TRACE[2025-08-09 16:05:51.175][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:51.177][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:51.178][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:51.179][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:51.181][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:51.182][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:51.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:51.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:51.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:51.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:51.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:51.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:51.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:51.199][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.DEBUG[2025-08-09 16:05:51.202][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:51.203][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:51.205][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.TRACE[2025-08-09 16:05:51.495][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265).
biodb.DEBUG[2025-08-09 16:05:51.789][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:51.792][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.content"
biodb.TRACE[2025-08-09 16:05:51.797][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.request"
biodb.TRACE[2025-08-09 16:05:52.347][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75265.xml"
biodb.DEBUG[2025-08-09 16:05:52.350][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:52.352][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:52.354][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:52.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:52.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:52.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:52.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:52.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:52.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:52.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:52.371][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:52.372][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:52.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.374][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:52.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:52.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:52.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:52.381][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:52.382][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:52.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.384][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:52.397][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:52.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:52.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:52.403][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:52.405][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:52.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.410][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:52.412][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:52.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:52.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:52.417][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:52.419][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:52.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.421][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:52.423][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:52.424][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:52.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.426][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:52.428][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:52.429][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:52.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.431][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:52.433][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:52.434][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:52.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.436][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:52.438][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:52.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:52.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:52.443][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:52.444][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:52.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.447][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:52.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:52.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:52.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:52.453][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:52.454][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:52.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.457][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:52.458][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:52.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:52.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:52.463][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:52.465][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:52.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.467][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:52.468][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:52.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:52.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:52.473][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:52.475][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:52.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.477][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:52.479][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:52.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:52.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:52.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:52.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:52.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:52.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:52.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:52.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:52.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:52.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:52.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:52.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:52.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:52.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:52.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:52.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:52.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:52.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:52.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:52.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:52.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:52.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:52.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:52.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:52.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:52.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:52.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:52.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:52.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:52.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:52.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:52.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:52.533][self$createEntryFromContent] Accession numbers: 75265.
biodb.TRACE[2025-08-09 16:05:52.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:52.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:52.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:52.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:52.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:52.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:52.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:52.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:52.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:52.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:52.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:52.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:52.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:52.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:52.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:52.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:52.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:52.563][private$loadEntries] Creating entries from ids [1]: "77370".
biodb.DEBUG[2025-08-09 16:05:52.564][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:52.566][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77370".
biodb.TRACE[2025-08-09 16:05:52.568][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:52.569][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:52.571][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:52.572][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:52.573][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:52.575][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:52.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:52.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:52.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:52.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:52.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:52.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:52.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:52.592][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.DEBUG[2025-08-09 16:05:52.595][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:52.596][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:52.598][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.TRACE[2025-08-09 16:05:52.891][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370).
biodb.DEBUG[2025-08-09 16:05:53.173][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:53.176][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.content"
biodb.TRACE[2025-08-09 16:05:53.180][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.request"
biodb.TRACE[2025-08-09 16:05:53.183][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77370.xml"
biodb.DEBUG[2025-08-09 16:05:53.186][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:53.187][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:53.188][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:53.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:53.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:53.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:53.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:53.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:53.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:53.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:53.206][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:53.207][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:53.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.209][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:53.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:53.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:53.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:53.215][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:53.217][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:53.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.219][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:53.221][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:53.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:53.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:53.225][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:53.227][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:53.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.229][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:53.230][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:53.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:53.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:53.235][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:53.237][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:53.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.239][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:53.240][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:53.242][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:53.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.244][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:53.245][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:53.247][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:53.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.249][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:53.250][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:53.252][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:53.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.254][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:53.255][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:53.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:53.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:53.260][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:53.262][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:53.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.264][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:53.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:53.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:53.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:53.270][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:53.271][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:53.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.274][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:53.275][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:53.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:53.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:53.280][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:53.282][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:53.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.284][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:53.285][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:53.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:53.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:53.290][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:53.291][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:53.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.294][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:53.295][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:53.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:53.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:53.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:53.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:53.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:53.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:53.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:53.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:53.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:53.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:53.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:53.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:53.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:53.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:53.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:53.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:53.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:53.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:53.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:53.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:53.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:53.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:53.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:53.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:53.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:53.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:53.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:53.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:53.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:53.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:53.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:53.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:53.348][self$createEntryFromContent] Accession numbers: 77370.
biodb.TRACE[2025-08-09 16:05:53.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:53.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:53.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:53.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:53.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:53.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:53.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:53.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:53.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:53.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:53.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:53.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:53.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:53.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:53.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:53.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:53.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:53.388][private$loadEntries] Creating entries from ids [1]: "79074".
biodb.DEBUG[2025-08-09 16:05:53.389][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:53.392][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79074".
biodb.TRACE[2025-08-09 16:05:53.394][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:53.396][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:53.397][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:53.399][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:53.400][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:53.401][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:53.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:53.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:53.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:53.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:53.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:53.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:53.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:53.418][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.DEBUG[2025-08-09 16:05:53.421][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:53.422][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:53.424][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.TRACE[2025-08-09 16:05:53.713][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074).
biodb.DEBUG[2025-08-09 16:05:54.018][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:54.021][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.content"
biodb.TRACE[2025-08-09 16:05:54.025][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.request"
biodb.TRACE[2025-08-09 16:05:54.029][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79074.xml"
biodb.DEBUG[2025-08-09 16:05:54.031][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:54.032][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:54.034][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:54.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:54.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:54.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:54.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:54.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:54.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:54.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:54.051][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:54.052][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:54.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.054][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:54.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:54.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.061][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:54.062][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:54.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.064][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.066][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:54.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:54.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.071][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:54.072][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:54.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.074][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.076][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:54.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:54.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.081][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:54.082][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:54.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.084][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:54.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:54.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.090][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:54.092][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:54.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.094][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:54.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:54.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.100][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:54.102][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:54.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.104][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.105][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:54.107][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:54.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.109][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.110][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:54.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:54.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.115][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:54.117][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:54.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.119][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:54.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:54.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.125][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:54.127][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:54.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.129][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.131][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:54.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:54.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.136][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:54.137][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:54.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.139][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.141][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:54.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:54.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.146][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:54.147][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:54.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.149][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.151][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:54.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:54.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:54.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:54.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:54.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:54.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:54.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:54.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:54.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:54.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:54.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:54.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:54.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:54.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:54.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:54.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:54.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:54.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:54.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:54.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:54.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:54.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:54.210][self$createEntryFromContent] Accession numbers: 79074.
biodb.TRACE[2025-08-09 16:05:54.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:54.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:54.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:54.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:54.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:54.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:54.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:54.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:54.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:54.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:54.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:54.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:54.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:54.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:54.240][private$loadEntries] Creating entries from ids [1]: "79302".
biodb.DEBUG[2025-08-09 16:05:54.241][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:54.243][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79302".
biodb.TRACE[2025-08-09 16:05:54.244][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:54.246][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:54.247][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:54.248][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:54.249][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:54.251][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:54.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:54.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:54.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:54.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:54.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:54.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:54.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:54.267][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.DEBUG[2025-08-09 16:05:54.270][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:54.272][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:54.273][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.TRACE[2025-08-09 16:05:54.562][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302).
biodb.DEBUG[2025-08-09 16:05:54.851][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:54.854][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.content"
biodb.TRACE[2025-08-09 16:05:54.858][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.request"
biodb.TRACE[2025-08-09 16:05:54.861][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79302.xml"
biodb.DEBUG[2025-08-09 16:05:54.863][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:54.865][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:54.866][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:54.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:54.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:54.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:54.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:54.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:54.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:54.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:54.884][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:54.885][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:54.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.887][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:54.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:54.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.894][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:54.895][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:54.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.898][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.899][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:54.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:54.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.904][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:54.905][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:54.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.908][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.909][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:54.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:54.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.914][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:54.915][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:54.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.918][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:54.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:54.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.924][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:54.925][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:54.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.928][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:54.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:54.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.934][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:54.935][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:54.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.938][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.939][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:54.941][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:54.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.943][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.944][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:54.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:54.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.949][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:54.951][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:54.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.953][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:54.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:54.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.959][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:54.961][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:54.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.963][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.965][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:54.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:54.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.981][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:54.983][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:54.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.985][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.987][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:54.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:54.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.992][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:54.993][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:54.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:54.996][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:54.997][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:54.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:55.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:55.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:55.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:55.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:55.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:55.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:55.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:55.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:55.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:55.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:55.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:55.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:55.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:55.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:55.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:55.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:55.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:55.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:55.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:55.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:55.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:55.050][self$createEntryFromContent] Accession numbers: 79302.
biodb.TRACE[2025-08-09 16:05:55.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:55.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:55.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:55.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:55.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:55.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:55.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:55.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:55.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:55.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:55.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:55.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:55.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:55.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:55.080][private$loadEntries] Creating entries from ids [1]: "84164".
biodb.DEBUG[2025-08-09 16:05:55.081][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:55.083][cch$loadFileContent] Trying to load 1 files from cache: [1]: "84164".
biodb.TRACE[2025-08-09 16:05:55.084][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:55.086][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:55.087][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:55.088][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:55.090][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:55.091][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:55.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:55.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:55.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:55.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:55.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:55.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:55.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:55.107][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.DEBUG[2025-08-09 16:05:55.111][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:55.112][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:55.113][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.TRACE[2025-08-09 16:05:55.410][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164).
biodb.DEBUG[2025-08-09 16:05:55.711][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:55.714][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.content"
biodb.TRACE[2025-08-09 16:05:55.718][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.request"
biodb.TRACE[2025-08-09 16:05:55.722][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/84164.xml"
biodb.DEBUG[2025-08-09 16:05:55.724][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:55.725][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:55.727][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:55.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:55.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:55.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:55.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:55.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:55.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:55.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:55.744][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:55.745][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:55.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.747][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:55.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:55.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.754][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:55.755][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:55.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.757][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.759][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:55.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:55.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.764][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:55.765][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:55.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.767][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.769][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:55.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:55.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.774][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:55.775][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:55.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.777][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.779][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:55.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:55.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.784][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:55.785][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:55.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.787][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:55.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:55.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.794][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:55.795][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:55.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.797][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.799][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:55.800][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:55.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.802][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.804][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:55.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:55.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.809][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:55.810][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:55.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.812][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:55.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:55.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.819][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:55.820][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:55.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.822][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.824][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:55.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:55.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.829][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:55.830][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:55.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.832][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.834][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:55.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:55.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.839][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:55.840][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:55.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.842][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.844][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:55.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:55.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:55.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:55.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:55.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:55.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:55.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:55.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:55.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:55.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:55.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:55.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:55.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:55.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:55.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:55.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:55.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:55.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:55.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:55.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:55.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:55.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:55.897][self$createEntryFromContent] Accession numbers: 84164.
biodb.TRACE[2025-08-09 16:05:55.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:55.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:55.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:55.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:55.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:55.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:55.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:55.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:55.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:55.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:55.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:55.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:55.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:55.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:55.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:55.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:55.927][private$loadEntries] Creating entries from ids [1]: "132314".
biodb.DEBUG[2025-08-09 16:05:55.929][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:55.931][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132314".
biodb.TRACE[2025-08-09 16:05:55.932][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:55.934][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:55.935][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:55.936][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:55.938][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:55.939][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:55.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:55.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:55.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:55.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:55.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:55.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:55.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:55.956][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.DEBUG[2025-08-09 16:05:55.959][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:55.960][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:55.962][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.TRACE[2025-08-09 16:05:56.256][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314).
biodb.DEBUG[2025-08-09 16:05:56.549][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:56.552][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.content"
biodb.TRACE[2025-08-09 16:05:56.557][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.request"
biodb.TRACE[2025-08-09 16:05:56.561][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132314.xml"
biodb.DEBUG[2025-08-09 16:05:56.563][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:56.576][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:56.578][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:56.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:56.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:56.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:56.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:56.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:56.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:56.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:56.597][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:56.598][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:56.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.601][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:56.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:56.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.607][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:56.609][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:56.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.611][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.612][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:56.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:56.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.617][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:56.619][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:56.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.621][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.623][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:56.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:56.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.628][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:56.629][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:56.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.631][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:56.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:56.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.638][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:56.639][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:56.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.642][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:56.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:56.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.650][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:56.651][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:56.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.653][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.655][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:56.656][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:56.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.659][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.660][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:56.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:56.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.665][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:56.666][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:56.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.669][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:56.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:56.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.675][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:56.676][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:56.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.679][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.680][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:56.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:56.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.685][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:56.687][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:56.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.689][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.690][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:56.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:56.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.695][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:56.697][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:56.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.699][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.701][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:56.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:56.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:56.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:56.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:56.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:56.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:56.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:56.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:56.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:56.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:56.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:56.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:56.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:56.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:56.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:56.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:56.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:56.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:56.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:56.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:56.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:56.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:56.755][self$createEntryFromContent] Accession numbers: 132314.
biodb.TRACE[2025-08-09 16:05:56.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:56.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:56.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:56.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:56.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:56.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:56.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:56.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:56.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:56.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:56.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:56.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:56.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:56.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:56.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:56.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:56.785][private$loadEntries] Creating entries from ids [1]: "132338".
biodb.DEBUG[2025-08-09 16:05:56.786][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:56.788][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132338".
biodb.TRACE[2025-08-09 16:05:56.790][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:56.791][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:56.792][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:56.794][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:56.795][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:56.796][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:56.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:56.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:56.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:56.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:56.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:56.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:56.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:56.813][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.DEBUG[2025-08-09 16:05:56.816][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:56.817][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:56.820][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.TRACE[2025-08-09 16:05:57.115][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338).
biodb.DEBUG[2025-08-09 16:05:57.401][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:57.404][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.content"
biodb.TRACE[2025-08-09 16:05:57.408][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.request"
biodb.TRACE[2025-08-09 16:05:57.412][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132338.xml"
biodb.DEBUG[2025-08-09 16:05:57.414][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:57.415][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:57.417][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:57.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:57.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:57.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:57.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:57.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:57.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:57.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:57.434][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:57.436][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:57.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.438][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:57.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:57.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.445][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:57.446][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:57.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.448][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.450][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:57.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:57.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.455][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:57.456][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:57.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.459][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.460][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:57.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:57.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.465][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:57.467][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:57.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.469][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.470][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:57.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:57.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.476][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:57.477][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:57.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.479][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:57.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:57.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.486][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:57.487][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:57.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.489][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.491][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:57.492][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:57.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.495][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.496][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:57.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:57.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.501][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:57.502][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:57.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.505][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:57.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:57.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.511][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:57.513][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:57.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.515][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.517][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:57.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:57.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.522][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:57.523][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:57.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.525][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.527][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:57.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:57.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.532][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:57.533][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:57.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.535][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.537][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:57.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:57.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:57.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:57.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:57.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:57.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:57.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:57.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:57.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:57.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:57.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:57.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:57.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:57.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:57.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:57.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:57.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:57.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:57.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:57.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:57.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:57.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:57.623][self$createEntryFromContent] Accession numbers: 132338.
biodb.TRACE[2025-08-09 16:05:57.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:57.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:57.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:57.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:57.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:57.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:57.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:57.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:57.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:57.639][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:57.640][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:57.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:57.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:57.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:57.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:57.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:57.653][private$loadEntries] Creating entries from ids [1]: "139019".
biodb.DEBUG[2025-08-09 16:05:57.654][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:57.656][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139019".
biodb.TRACE[2025-08-09 16:05:57.658][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:57.659][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:57.661][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:57.662][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:57.663][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:57.664][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:57.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:57.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:57.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:57.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:57.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:57.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:57.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:57.682][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.DEBUG[2025-08-09 16:05:57.685][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:57.686][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:57.688][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.TRACE[2025-08-09 16:05:57.979][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019).
biodb.DEBUG[2025-08-09 16:05:58.273][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:58.276][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.content"
biodb.TRACE[2025-08-09 16:05:58.462][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.request"
biodb.TRACE[2025-08-09 16:05:58.465][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139019.xml"
biodb.DEBUG[2025-08-09 16:05:58.468][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:58.470][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:58.471][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:58.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:58.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:58.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:58.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:58.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:58.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:58.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:58.488][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:58.489][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:58.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.492][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:58.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:58.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.498][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:58.500][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:58.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.502][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.503][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:58.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:58.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.509][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:58.510][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:58.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.512][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.514][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:58.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:58.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.519][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:58.520][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:58.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.522][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:58.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:58.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.529][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:58.530][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:58.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.533][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:58.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:58.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.539][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:58.540][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:58.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.543][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.544][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:58.546][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:58.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.548][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.549][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:58.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:58.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.554][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:58.556][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:58.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.558][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:58.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:58.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.564][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:58.566][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:58.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.568][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.570][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:58.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:58.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.575][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:58.576][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:58.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.578][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.580][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:58.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:58.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.585][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:58.586][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:58.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.589][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.590][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:58.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:58.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:58.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:58.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:58.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:58.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:58.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:58.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:58.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:58.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:58.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:58.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:58.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:58.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:58.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:58.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:58.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:58.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:58.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:58.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:58.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:58.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:58.644][self$createEntryFromContent] Accession numbers: 139019.
biodb.TRACE[2025-08-09 16:05:58.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:58.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:58.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:58.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:58.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:58.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:58.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:58.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:58.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:58.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:58.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:58.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:58.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:58.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:58.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:58.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:58.675][private$loadEntries] Creating entries from ids [1]: "139367".
biodb.DEBUG[2025-08-09 16:05:58.676][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:58.678][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139367".
biodb.TRACE[2025-08-09 16:05:58.680][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:58.681][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:58.683][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:58.684][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:58.685][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:58.687][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:58.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:58.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:58.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:58.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:58.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:58.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:58.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:58.704][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.DEBUG[2025-08-09 16:05:58.708][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:58.709][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:58.710][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.TRACE[2025-08-09 16:05:59.001][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367).
biodb.DEBUG[2025-08-09 16:05:59.293][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:05:59.296][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.content"
biodb.TRACE[2025-08-09 16:05:59.300][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.request"
biodb.TRACE[2025-08-09 16:05:59.304][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139367.xml"
biodb.DEBUG[2025-08-09 16:05:59.306][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:05:59.308][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:05:59.310][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:05:59.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:59.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:59.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:59.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:59.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:59.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:59.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:05:59.327][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:59.329][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:59.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.331][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:59.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:59.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.338][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:59.339][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:59.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.341][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.343][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:05:59.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:05:59.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.348][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:59.349][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:59.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.351][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.353][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:05:59.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:05:59.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.358][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:59.359][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:59.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.373][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:05:59.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:05:59.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.381][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:59.382][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:59.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.384][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:05:59.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:05:59.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.391][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:59.392][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:05:59.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.395][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.396][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:59.398][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:59.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.400][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.401][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:05:59.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:05:59.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.406][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:59.408][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:59.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.410][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:59.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:59.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.417][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:59.418][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:59.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.420][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.422][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:05:59.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:05:59.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.427][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:59.428][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:59.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.431][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.432][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:05:59.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:05:59.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.437][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:59.438][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:59.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.441][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.442][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:05:59.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:05:59.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:59.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:59.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:59.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:59.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:59.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:59.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:05:59.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:05:59.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:59.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:59.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:59.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:59.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:59.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:59.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:59.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:59.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:59.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:59.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:05:59.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:05:59.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:59.497][self$createEntryFromContent] Accession numbers: 139367.
biodb.TRACE[2025-08-09 16:05:59.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:59.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:59.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:59.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:59.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:05:59.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:59.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:05:59.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:05:59.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:05:59.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:59.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:59.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:59.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:59.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:59.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:59.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:59.528][private$loadEntries] Creating entries from ids [1]: "145029".
biodb.DEBUG[2025-08-09 16:05:59.530][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:05:59.532][cch$loadFileContent] Trying to load 1 files from cache: [1]: "145029".
biodb.TRACE[2025-08-09 16:05:59.533][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:05:59.535][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:05:59.536][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:05:59.537][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:05:59.539][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:05:59.540][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:05:59.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:05:59.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:05:59.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:05:59.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:05:59.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:05:59.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:05:59.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:05:59.558][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.DEBUG[2025-08-09 16:05:59.561][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:05:59.562][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:05:59.564][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.TRACE[2025-08-09 16:05:59.869][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029).
biodb.DEBUG[2025-08-09 16:06:00.170][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:06:00.173][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.content"
biodb.TRACE[2025-08-09 16:06:00.202][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.request"
biodb.TRACE[2025-08-09 16:06:00.206][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/145029.xml"
biodb.DEBUG[2025-08-09 16:06:00.209][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:06:00.211][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:06:00.212][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:06:00.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:00.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:00.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:00.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:00.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:00.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:00.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:00.230][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:00.231][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:00.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.234][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:00.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:00.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.240][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:00.242][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:00.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.244][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.245][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:00.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:00.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.250][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:00.252][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:00.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.254][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.256][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:00.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:00.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.261][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:00.262][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:00.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.264][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:00.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:00.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.271][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:00.272][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:00.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.274][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.276][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:00.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:00.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.281][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:00.282][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:00.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.284][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.286][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:06:00.287][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:00.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.289][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.291][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:06:00.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:00.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.296][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:00.297][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:00.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.300][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:00.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:00.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.306][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:00.307][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:00.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.310][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.312][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:00.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:00.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.317][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:06:00.318][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:00.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.320][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.322][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:06:00.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:00.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.327][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:00.328][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:00.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.330][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.332][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:00.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:00.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:00.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:00.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:00.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:00.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:00.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:00.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:00.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:00.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:00.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:00.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:00.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:00.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:00.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:00.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:00.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:00.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:00.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:00.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:00.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:00.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:00.386][self$createEntryFromContent] Accession numbers: 145029.
biodb.TRACE[2025-08-09 16:06:00.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:00.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:00.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:00.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:00.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:00.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:00.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:00.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:00.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:00.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:00.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:00.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:00.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:00.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:00.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:00.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:00.426][private$loadEntries] Creating entries from ids [1]: "173077".
biodb.DEBUG[2025-08-09 16:06:00.428][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:06:00.430][cch$loadFileContent] Trying to load 1 files from cache: [1]: "173077".
biodb.TRACE[2025-08-09 16:06:00.432][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:06:00.433][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:06:00.435][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:06:00.436][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:06:00.437][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:06:00.438][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:06:00.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:00.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:00.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:00.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:00.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:00.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:00.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:00.456][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.DEBUG[2025-08-09 16:06:00.459][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:06:00.460][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:06:00.462][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.TRACE[2025-08-09 16:06:00.760][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077).
biodb.DEBUG[2025-08-09 16:06:01.125][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:06:01.128][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.content"
biodb.TRACE[2025-08-09 16:06:01.133][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.request"
biodb.TRACE[2025-08-09 16:06:01.137][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/173077.xml"
biodb.DEBUG[2025-08-09 16:06:01.139][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:06:01.141][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:06:01.142][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:06:01.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:01.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:01.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:01.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:01.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:01.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:01.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:01.160][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:01.161][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:01.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.163][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:01.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:01.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.170][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:01.171][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:01.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.173][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.175][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:01.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:01.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.180][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:01.181][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:01.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.183][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.185][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:01.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:01.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.190][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:01.191][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:01.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.194][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:01.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:01.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.200][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:01.202][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:01.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.204][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:01.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:01.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.210][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:01.212][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:01.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.214][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.216][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:06:01.217][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:01.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.219][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.221][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:06:01.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:01.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.226][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:01.227][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:01.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.229][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:01.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:01.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.236][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:01.237][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:01.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.240][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.241][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:01.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:01.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.246][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:06:01.248][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:01.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.250][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.252][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:06:01.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:01.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.257][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:01.258][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:01.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.260][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.262][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:01.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:01.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:01.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:01.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:01.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:01.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:01.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:01.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:01.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:01.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:01.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:01.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:01.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:01.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:01.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:01.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:01.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:01.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:01.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:01.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:01.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:01.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:01.316][self$createEntryFromContent] Accession numbers: 173077.
biodb.TRACE[2025-08-09 16:06:01.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:01.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:01.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:01.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:01.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:01.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:01.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:01.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:01.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:01.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:01.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:01.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:01.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:01.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:01.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:01.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:01.346][private$loadEntries] Creating entries from ids [1]: "365445".
biodb.DEBUG[2025-08-09 16:06:01.347][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:06:01.349][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365445".
biodb.TRACE[2025-08-09 16:06:01.350][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:06:01.352][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:06:01.353][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:06:01.354][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:06:01.356][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:06:01.357][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:06:01.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:01.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:01.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:01.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:01.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:01.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:01.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:01.374][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.DEBUG[2025-08-09 16:06:01.377][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:06:01.378][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:06:01.380][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.TRACE[2025-08-09 16:06:01.679][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445).
biodb.DEBUG[2025-08-09 16:06:01.967][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:06:01.970][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.content"
biodb.TRACE[2025-08-09 16:06:01.975][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.request"
biodb.TRACE[2025-08-09 16:06:01.979][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365445.xml"
biodb.DEBUG[2025-08-09 16:06:01.981][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:06:01.982][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:06:01.984][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:06:01.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:01.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:01.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:01.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:01.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:01.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:01.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:02.001][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:02.003][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:02.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.005][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:02.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:02.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.012][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:02.013][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:02.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.015][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.017][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:02.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:02.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.022][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:02.023][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:02.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.025][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.027][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:02.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:02.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.032][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:02.033][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:02.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.035][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:02.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:02.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.042][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:02.043][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:02.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.046][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.047][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:02.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:02.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.052][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:02.053][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:02.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.056][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.057][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:06:02.058][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:02.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.061][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.062][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:06:02.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:02.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.067][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:02.069][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:02.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.071][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:02.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:02.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.077][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:02.079][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:02.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.081][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.083][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:02.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:02.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.100][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:06:02.102][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:02.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.104][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.106][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:06:02.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:02.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.111][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:02.113][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:02.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.115][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.117][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:02.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:02.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:02.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:02.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:02.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:02.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:02.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:02.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:02.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:02.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:02.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:02.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:02.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:02.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:02.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:02.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:02.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:02.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:02.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:02.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:02.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:02.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:02.170][self$createEntryFromContent] Accession numbers: 365445.
biodb.TRACE[2025-08-09 16:06:02.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:02.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:02.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:02.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:02.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:02.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:02.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:02.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:02.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:02.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:02.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:02.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:02.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:02.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:02.201][private$loadEntries] Creating entries from ids [1]: "32151".
biodb.DEBUG[2025-08-09 16:06:02.203][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:06:02.204][cch$loadFileContent] Trying to load 1 files from cache: [1]: "32151".
biodb.TRACE[2025-08-09 16:06:02.206][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:06:02.207][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:06:02.209][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:06:02.210][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:06:02.211][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:06:02.212][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:06:02.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:02.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:02.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:02.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:02.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:02.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:02.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:02.230][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.DEBUG[2025-08-09 16:06:02.233][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:06:02.234][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:06:02.236][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.TRACE[2025-08-09 16:06:02.523][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151).
biodb.DEBUG[2025-08-09 16:06:02.810][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:06:02.813][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.content"
biodb.TRACE[2025-08-09 16:06:02.818][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.request"
biodb.TRACE[2025-08-09 16:06:02.821][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32151.xml"
biodb.DEBUG[2025-08-09 16:06:02.823][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:06:02.825][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:06:02.826][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:06:02.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:02.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:02.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:02.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:02.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:02.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:02.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:02.843][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:02.844][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:02.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.847][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:02.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:02.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.853][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:02.854][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:02.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.857][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.858][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:02.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:02.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.863][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:02.864][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:02.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.867][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.868][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:02.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:02.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.873][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:02.875][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:02.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.877][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:02.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:02.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.883][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:02.885][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:02.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.887][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:02.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:02.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.893][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:02.895][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:02.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.897][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.898][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:06:02.900][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:02.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.902][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.903][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:06:02.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:02.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.908][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:02.910][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:02.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.912][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:02.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:02.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.918][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:02.920][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:02.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.922][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.923][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:02.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:02.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.928][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:06:02.930][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:02.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.932][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.933][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:06:02.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:02.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.938][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:02.939][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:02.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.942][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.943][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:02.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:02.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:02.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:02.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:02.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:02.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:02.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:02.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:02.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:02.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:02.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:02.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:02.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:02.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:02.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:02.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:02.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:02.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:02.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:02.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:02.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:02.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:02.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:02.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:02.997][self$createEntryFromContent] Accession numbers: 32151.
biodb.TRACE[2025-08-09 16:06:02.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:02.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:03.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:03.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:03.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:03.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:03.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:03.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:03.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:03.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:03.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:03.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:03.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:03.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:03.027][private$loadEntries] Creating entries from ids [1]: "67676".
biodb.DEBUG[2025-08-09 16:06:03.028][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:06:03.030][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67676".
biodb.TRACE[2025-08-09 16:06:03.031][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:06:03.033][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:06:03.034][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:06:03.035][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:06:03.037][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:06:03.038][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:06:03.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:03.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:03.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:03.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:03.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:03.052][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:03.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:03.055][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.DEBUG[2025-08-09 16:06:03.059][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:06:03.061][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:06:03.063][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.TRACE[2025-08-09 16:06:03.357][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676).
biodb.DEBUG[2025-08-09 16:06:03.650][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:06:03.653][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.content"
biodb.TRACE[2025-08-09 16:06:03.658][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.request"
biodb.TRACE[2025-08-09 16:06:03.661][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67676.xml"
biodb.DEBUG[2025-08-09 16:06:03.663][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:06:03.665][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:06:03.678][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:06:03.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:03.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:03.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:03.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:03.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:03.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:03.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:03.709][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:03.712][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:03.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.715][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:03.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:03.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.725][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:03.727][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:03.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.731][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.734][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:03.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:03.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.741][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:03.743][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:03.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.747][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.749][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:03.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:03.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.757][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:03.759][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:03.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.763][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:03.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:03.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.773][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:03.775][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:03.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.778][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:03.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:03.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.789][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:03.791][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:03.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.794][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.797][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:06:03.798][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:03.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.803][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.805][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:06:03.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:03.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.814][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:03.816][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:03.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.819][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:03.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:03.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.830][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:03.832][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:03.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.836][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.838][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:03.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:03.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.847][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:06:03.848][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:03.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.852][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.855][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:06:03.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:03.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.863][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:03.865][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:03.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.869][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.872][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:03.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:03.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:03.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:03.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:03.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:03.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:03.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:03.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:03.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:03.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:03.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:03.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:03.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:03.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:03.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:03.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:03.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:03.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:03.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:03.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:03.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:03.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:03.954][self$createEntryFromContent] Accession numbers: 67676.
biodb.TRACE[2025-08-09 16:06:03.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:03.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:03.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:03.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:03.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:03.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:03.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:03.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:03.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:03.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:03.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:03.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:03.980][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:03.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:03.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:03.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:03.984][private$loadEntries] Creating entries from ids [1]: "69690".
biodb.DEBUG[2025-08-09 16:06:03.986][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:06:03.988][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69690".
biodb.TRACE[2025-08-09 16:06:03.989][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:06:03.991][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:06:03.992][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:06:03.993][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:06:03.995][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:06:03.996][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:06:03.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:04.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:04.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:04.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:04.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:04.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:04.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:04.013][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.DEBUG[2025-08-09 16:06:04.016][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:06:04.017][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:06:04.019][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.TRACE[2025-08-09 16:06:04.304][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690).
biodb.DEBUG[2025-08-09 16:06:04.590][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:06:04.593][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.content"
biodb.TRACE[2025-08-09 16:06:04.600][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.request"
biodb.TRACE[2025-08-09 16:06:04.603][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69690.xml"
biodb.DEBUG[2025-08-09 16:06:04.606][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:06:04.607][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:06:04.609][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:06:04.611][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:04.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:04.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:04.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:04.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:04.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:04.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:04.626][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:04.627][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:04.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.630][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:04.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:04.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.636][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:04.637][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:04.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.640][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.641][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:04.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:04.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.646][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:04.648][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:04.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.650][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.651][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:04.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:04.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.656][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:04.658][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:04.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.660][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:04.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:04.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.667][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:04.669][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:04.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.671][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:04.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:04.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.677][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:04.679][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:04.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.681][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.682][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:06:04.684][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:04.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.686][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.688][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:06:04.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:04.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.693][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:04.694][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:04.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.696][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:04.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:04.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.703][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:04.704][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:04.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.706][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.708][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:04.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:04.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.713][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:06:04.714][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:04.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.717][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.718][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:06:04.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:04.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.723][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:04.725][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:04.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.727][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.728][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:04.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:04.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:04.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:04.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:04.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:04.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:04.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:04.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:04.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:04.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:04.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:04.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:04.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:04.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:04.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:04.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:04.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:04.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:04.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:04.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:04.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:04.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:04.794][self$createEntryFromContent] Accession numbers: 69690.
biodb.TRACE[2025-08-09 16:06:04.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:04.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:04.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:04.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:04.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:04.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:04.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:04.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:04.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:04.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:04.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:04.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:04.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:04.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:04.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:04.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:04.824][private$loadEntries] Creating entries from ids [1]: "69734".
biodb.DEBUG[2025-08-09 16:06:04.825][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:06:04.827][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69734".
biodb.TRACE[2025-08-09 16:06:04.829][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:06:04.830][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:06:04.832][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:06:04.833][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:06:04.834][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:06:04.835][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:06:04.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:04.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:04.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:04.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:04.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:04.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:04.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:04.853][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.DEBUG[2025-08-09 16:06:04.856][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:06:04.857][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:06:04.859][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.TRACE[2025-08-09 16:06:05.144][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734).
biodb.DEBUG[2025-08-09 16:06:05.427][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:06:05.429][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.content"
biodb.TRACE[2025-08-09 16:06:05.434][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.request"
biodb.TRACE[2025-08-09 16:06:05.437][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69734.xml"
biodb.DEBUG[2025-08-09 16:06:05.751][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:06:05.752][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:06:05.754][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:06:05.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:05.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:05.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:05.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:05.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:05.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:05.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:05.771][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:05.772][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:05.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.775][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:05.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:05.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.781][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:05.782][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:05.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.785][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.786][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:05.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:05.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.791][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:05.792][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:05.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.795][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.796][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:05.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:05.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.801][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:05.802][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:05.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.805][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.806][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:05.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:05.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.811][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:05.812][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:05.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.815][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:05.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:05.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.821][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:05.822][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:05.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.825][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.826][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:06:05.827][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:05.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.830][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.831][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:06:05.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:05.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.836][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:05.837][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:05.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.839][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:05.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:05.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.846][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:05.847][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:05.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.849][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.851][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:05.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:05.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.856][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:06:05.857][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:05.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.860][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.861][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:06:05.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:05.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.866][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:05.867][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:05.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.870][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.871][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:05.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:05.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:05.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:05.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:05.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:05.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:05.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:05.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:05.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:05.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:05.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:05.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:05.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:05.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:05.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:05.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:05.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:05.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:05.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:05.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:05.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:05.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:05.924][self$createEntryFromContent] Accession numbers: 69734.
biodb.TRACE[2025-08-09 16:06:05.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:05.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:05.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:05.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:05.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:05.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:05.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:05.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:05.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:05.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:05.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:05.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:05.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:05.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:05.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:05.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:05.953][private$loadEntries] Creating entries from ids [1]: "79978".
biodb.DEBUG[2025-08-09 16:06:05.955][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:06:05.957][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79978".
biodb.TRACE[2025-08-09 16:06:05.958][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:06:05.960][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:06:05.961][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:06:05.962][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:06:05.963][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:06:05.965][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:06:05.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:05.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:05.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:05.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:05.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:05.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:05.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:05.982][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.DEBUG[2025-08-09 16:06:05.985][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:06:05.986][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:06:05.988][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.TRACE[2025-08-09 16:06:06.276][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978).
biodb.DEBUG[2025-08-09 16:06:06.556][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:06:06.559][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.content"
biodb.TRACE[2025-08-09 16:06:07.012][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.request"
biodb.TRACE[2025-08-09 16:06:07.545][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79978.xml"
biodb.DEBUG[2025-08-09 16:06:07.548][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:06:07.549][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:06:07.551][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:06:07.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:07.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:07.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:07.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:07.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:07.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:07.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:07.568][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:07.570][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:07.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.572][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:07.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:07.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.578][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:07.580][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:07.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.582][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.584][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:07.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:07.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.588][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:07.590][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:07.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.592][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.594][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:07.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:07.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.599][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:07.600][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:07.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.613][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:07.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:07.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.621][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:07.622][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:07.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.624][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:07.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:07.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.631][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:07.632][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:07.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.634][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.636][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:07.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:07.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.641][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:06:07.642][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:07.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.644][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.646][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:06:07.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:07.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.651][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:07.652][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:07.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.654][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:07.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:07.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.661][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:07.662][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:07.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.664][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.666][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:07.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:07.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.671][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:06:07.672][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:07.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.674][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.676][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:06:07.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:07.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.681][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:07.682][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:07.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.684][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.686][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:07.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:07.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:07.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:07.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:07.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:07.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:07.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:07.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:07.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:07.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:07.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:07.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:07.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:07.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:07.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:07.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:07.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:07.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:07.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:07.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:07.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:07.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:07.738][self$createEntryFromContent] Accession numbers: 79978.
biodb.TRACE[2025-08-09 16:06:07.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:07.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:07.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:07.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:07.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:07.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:07.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:07.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:07.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:07.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:07.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:07.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:07.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:07.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:07.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:07.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:07.768][private$loadEntries] Creating entries from ids [1]: "88771".
biodb.DEBUG[2025-08-09 16:06:07.770][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-09 16:06:07.771][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88771".
biodb.TRACE[2025-08-09 16:06:07.773][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-09 16:06:07.775][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-09 16:06:07.776][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:06:07.777][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:06:07.778][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-08-09 16:06:07.780][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-08-09 16:06:07.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:07.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:07.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:07.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:07.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:07.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:07.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:07.797][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.DEBUG[2025-08-09 16:06:07.800][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-08-09 16:06:07.801][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-08-09 16:06:07.803][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.TRACE[2025-08-09 16:06:08.088][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771).
biodb.DEBUG[2025-08-09 16:06:08.374][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-08-09 16:06:08.377][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.content"
biodb.TRACE[2025-08-09 16:06:08.381][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.request"
biodb.TRACE[2025-08-09 16:06:08.385][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88771.xml"
biodb.DEBUG[2025-08-09 16:06:08.640][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-08-09 16:06:08.642][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:06:08.644][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:06:08.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:08.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:08.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:08.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:08.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:08.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:08.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:08.661][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:08.663][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:08.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.665][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:08.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:08.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.672][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:08.674][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:08.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.676][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.677][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:08.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:08.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.683][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:08.684][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:08.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.686][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.688][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:08.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:08.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.693][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:08.694][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:08.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.697][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:08.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:08.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.704][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:08.705][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:08.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.707][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.709][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:08.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:08.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.715][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:08.716][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:08.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.718][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.720][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:06:08.721][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:08.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.723][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.725][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:06:08.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:08.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.730][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:08.731][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:08.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.734][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:08.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:08.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.740][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:08.742][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:08.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.744][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.746][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:08.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:08.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.752][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:06:08.753][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:08.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.756][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.757][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:06:08.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:08.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.762][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:08.764][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:08.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.766][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.768][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:08.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:08.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:08.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:08.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:08.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:08.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:08.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:08.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:08.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:08.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:08.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:08.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:08.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:08.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:08.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:08.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:08.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:08.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:08.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:08.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:08.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:08.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:08.822][self$createEntryFromContent] Accession numbers: 88771.
biodb.TRACE[2025-08-09 16:06:08.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:08.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:08.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:08.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:08.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:08.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:08.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:08.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:08.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:08.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:08.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:08.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:08.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:08.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:08.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:08.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:08.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:08.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:08.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:08.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:08.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:08.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:08.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:08.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:08.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:08.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:08.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:08.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:08.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:08.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:08.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:08.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:08.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:08.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:08.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:08.907][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:06:08.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:08.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:08.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:08.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:08.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:08.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:08.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:08.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:08.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:08.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:08.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:08.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.932][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:08.934][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:08.935][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:08.936][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:08.937][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:08.938][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:08.940][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:08.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.942][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.943][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:08.944][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:08.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.947][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.948][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:08.949][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:08.950][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:08.952][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:08.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.954][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.955][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:08.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:08.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:08.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:08.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:08.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:08.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:08.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.971][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-09 16:06:08.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:08.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:08.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:08.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:08.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:08.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:08.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:08.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:08.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:08.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:08.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:08.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:08.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:08.997][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:08.998][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:08.999][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:09.000][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:09.001][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.003][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.004][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.006][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.007][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.009][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.011][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.012][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.013][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.015][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.016][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.018][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.019][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:09.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.036][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-08-09 16:06:09.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:09.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:09.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:09.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:09.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:09.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:09.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:09.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.061][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.062][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:09.063][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:09.065][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:09.066][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.067][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.068][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.071][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.072][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.073][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.076][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.077][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.078][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.079][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.081][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.083][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.084][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:09.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.100][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-08-09 16:06:09.102][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:06:09.103][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:06:09.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:09.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:09.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:09.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:09.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:09.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:09.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:09.121][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:09.125][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:09.126][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2025-08-09 16:06:09.128][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:09.131][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2025-08-09 16:06:09.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:09.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:09.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:09.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:09.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:09.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:09.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:09.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:09.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:09.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:09.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:09.175][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:09.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:09.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:09.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:09.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:09.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:09.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:09.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:09.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:09.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:09.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:09.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:09.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:09.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:09.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:09.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:09.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:09.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:09.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:09.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:09.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:09.252][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:06:09.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:09.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:09.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:09.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:09.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:09.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:09.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:09.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.287][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.288][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:09.289][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:09.290][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:09.292][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.293][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.294][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.297][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.298][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.299][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.301][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.303][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.304][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.305][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.306][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.309][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.310][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:09.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.326][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-08-09 16:06:09.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:09.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:09.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:09.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:09.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:09.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:09.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:09.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.351][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.352][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:09.353][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:09.354][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:09.355][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.356][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.358][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.360][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.361][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.362][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.365][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.366][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.367][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.368][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.370][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.372][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.373][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:09.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.389][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-08-09 16:06:09.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:09.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:09.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:09.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:09.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:09.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:09.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:09.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.414][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.415][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:09.416][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:09.418][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:09.419][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.420][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.421][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.424][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.425][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.426][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.428][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.430][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.431][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.432][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.433][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.435][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.437][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:09.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.453][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-09 16:06:09.454][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:06:09.455][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:06:09.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:09.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:09.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:09.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:09.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:09.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:09.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:09.500][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:09.503][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:09.505][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2025-08-09 16:06:09.506][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:09.509][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2025-08-09 16:06:09.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:09.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:09.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:09.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:09.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:09.527][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:09.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:09.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:09.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:09.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:09.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:09.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:09.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:09.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:09.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:09.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:09.573][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:09.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:09.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:09.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:09.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:09.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:09.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:09.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:09.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:09.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:09.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:09.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:09.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:09.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:09.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:09.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:09.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:09.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:09.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:09.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:09.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:09.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:09.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:09.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:09.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:09.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:09.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:09.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:09.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:09.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:09.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:09.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:09.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:09.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:09.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:09.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:09.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:09.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:09.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:09.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:09.725][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:06:09.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:09.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:09.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:09.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:09.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:09.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:09.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:09.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.750][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.752][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:09.753][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:09.754][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:09.755][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.757][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.760][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.761][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.762][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.765][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.766][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.767][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.768][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.769][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.772][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.773][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:09.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.789][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-08-09 16:06:09.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:09.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:09.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:09.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:09.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:09.802][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:09.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:09.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.814][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.815][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:09.816][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:09.817][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:09.819][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.820][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.821][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.823][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.825][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.826][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.828][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.829][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.831][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.832][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.833][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.835][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.837][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:09.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.853][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-09 16:06:09.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:09.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:09.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:09.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:09.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:09.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:09.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:09.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.878][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.879][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:09.880][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:09.882][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:09.883][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.884][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.885][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.888][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.889][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.890][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.892][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.894][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.895][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:09.896][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.897][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.899][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.901][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:09.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:09.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.917][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2025-08-09 16:06:09.918][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:06:09.919][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:06:09.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:09.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:09.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:09.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:09.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:09.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:09.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:09.937][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:09.941][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:09.942][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365d4ea5e0e90826806fec708da6c9ab".
biodb.TRACE[2025-08-09 16:06:09.944][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:09.947][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content".
biodb.DEBUG[2025-08-09 16:06:09.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:09.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:09.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:09.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:09.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:09.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:09.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:09.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:09.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:09.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:09.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:09.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:09.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:09.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:09.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:09.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:09.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:09.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:09.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:10.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:10.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:10.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:10.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:10.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:10.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:10.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:10.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:10.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:10.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:10.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:10.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:10.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:10.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:10.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:10.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:10.068][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:06:10.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:10.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:10.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:10.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:10.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:10.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:10.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:10.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.094][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.096][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:10.097][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:10.098][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:10.099][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.100][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.101][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.104][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.105][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.106][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.109][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.117][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.119][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.121][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.122][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.125][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.126][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:10.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.142][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2025-08-09 16:06:10.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:10.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:10.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:10.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:10.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:10.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:10.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:10.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.167][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.168][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:10.169][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:10.170][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:10.172][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.173][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.174][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.176][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.178][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.179][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.181][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.182][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.183][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.185][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.186][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.189][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.190][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:10.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.206][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-09 16:06:10.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:10.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:10.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:10.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:10.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:10.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:10.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:10.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.231][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.233][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:10.234][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:10.235][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:10.236][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.237][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.238][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.241][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.242][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.243][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.246][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.247][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.248][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.249][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.251][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.253][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.254][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:10.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.271][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-09 16:06:10.272][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:06:10.273][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:06:10.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:10.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:10.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:10.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:10.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:10.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:10.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:10.292][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:10.295][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:10.297][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7b0416ab2d5cbf869f248000c039a8e8".
biodb.TRACE[2025-08-09 16:06:10.298][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:10.301][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content".
biodb.DEBUG[2025-08-09 16:06:10.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:10.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:10.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:10.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:10.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:10.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:10.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:10.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:10.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:10.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:10.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:10.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:10.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:10.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:10.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:10.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:10.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:10.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:10.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:10.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:10.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:10.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:10.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:10.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:10.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:10.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:10.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:10.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:10.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:10.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:10.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:10.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:10.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:10.423][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:10.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:10.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:10.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:10.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:10.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:10.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:10.451][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:06:10.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:10.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:10.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:10.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:10.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:10.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:10.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:10.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.478][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.480][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:10.481][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:10.482][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:10.483][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.484][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.486][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.488][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.489][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.490][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.493][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.494][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.495][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.496][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.497][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.500][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.501][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:10.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.517][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2025-08-09 16:06:10.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:10.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:10.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:10.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:10.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:10.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:10.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:10.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.551][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.552][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:10.553][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:10.555][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:10.556][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.557][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.558][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.561][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.562][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.563][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.566][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.567][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.568][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.570][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.573][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.574][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:10.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.590][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2025-08-09 16:06:10.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:10.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:10.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:10.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:10.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:10.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:10.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:10.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.615][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.616][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:10.617][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:10.618][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:10.620][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.621][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.622][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.624][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.626][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.627][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.629][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.630][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.632][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.633][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.634][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.636][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.637][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:10.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.653][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2025-08-09 16:06:10.655][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:06:10.656][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:06:10.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:10.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:10.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:10.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:10.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:10.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:10.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:10.700][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:10.704][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:10.705][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-08-09 16:06:10.707][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:10.709][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-08-09 16:06:10.713][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:10.716][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:10.718][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-08-09 16:06:10.719][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:10.722][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-08-09 16:06:10.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:10.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:10.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:10.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:10.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:10.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:10.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:10.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:10.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:10.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:10.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:10.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:10.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:10.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:10.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:10.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:10.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:10.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:10.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:10.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:10.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:10.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:10.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:10.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:10.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:10.812][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:06:10.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:10.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:10.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:10.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:10.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:10.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:10.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:10.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.838][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.839][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:10.840][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:10.841][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:10.842][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.843][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.845][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.847][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.848][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.850][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.852][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.853][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.854][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.856][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.857][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.859][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.860][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:10.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.877][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-09 16:06:10.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:10.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:10.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:10.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:10.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:10.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:10.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:10.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.902][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.903][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:10.905][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:10.906][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:10.907][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.908][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.910][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.912][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.913][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.915][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.917][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.918][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.920][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.921][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.922][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.925][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.926][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:10.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.942][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-09 16:06:10.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:10.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:10.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:10.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:10.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:10.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:10.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:10.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.976][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.978][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:10.979][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:10.980][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:10.981][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.982][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.984][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.986][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.987][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.989][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.991][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.992][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.993][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:10.995][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.996][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:10.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:10.998][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:10.999][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:11.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.016][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-09 16:06:11.017][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:06:11.018][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:06:11.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:11.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:11.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:11.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:11.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:11.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:11.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:11.036][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:11.039][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:11.041][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-08-09 16:06:11.043][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:11.045][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-08-09 16:06:11.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:11.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:11.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:11.057][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:11.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:11.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:11.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:11.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:11.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:11.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:11.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:11.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:11.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:11.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:11.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:11.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:11.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:11.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:11.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:11.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:11.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:11.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:11.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:11.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:11.135][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:06:11.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:11.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:11.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:11.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:11.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:11.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:11.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:11.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.160][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:11.161][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:11.162][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:11.163][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:11.165][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:11.166][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.167][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.169][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.171][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.172][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.174][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.175][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:11.177][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:11.178][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.179][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.181][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.183][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:11.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.199][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-09 16:06:11.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:11.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:11.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:11.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:11.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:11.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:11.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:11.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.224][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:11.225][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:11.227][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:11.228][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:11.229][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:11.230][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.231][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.234][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.235][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.236][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.238][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.240][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:11.241][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:11.242][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.243][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.246][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.247][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:11.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.263][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-08-09 16:06:11.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:11.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:11.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:11.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:11.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:11.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:11.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:11.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.288][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:11.289][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:11.290][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:11.291][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:11.292][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:11.293][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.295][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.297][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.298][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.299][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.302][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.303][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:11.304][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:11.305][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.307][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.309][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.310][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:11.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.326][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-08-09 16:06:11.327][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:06:11.329][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:06:11.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:11.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:11.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:11.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:11.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:11.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:11.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:11.347][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:11.350][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:11.352][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-08-09 16:06:11.353][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:11.356][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-08-09 16:06:11.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:11.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:11.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:11.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:11.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:11.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:11.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:11.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:11.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:11.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:11.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:11.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:11.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:11.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:11.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:11.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:11.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:11.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:11.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:11.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:11.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:11.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:11.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:11.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:11.455][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:06:11.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:11.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:11.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:11.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:11.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:11.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:11.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:11.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.480][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:11.482][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:11.483][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:11.484][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:11.485][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:11.486][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.488][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.490][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.491][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.492][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.495][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.496][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:11.497][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:11.498][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.500][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.502][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.503][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:11.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.519][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-08-09 16:06:11.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:11.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:11.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:11.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:11.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:11.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:11.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:11.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.544][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:11.546][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:11.547][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:11.548][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:11.549][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:11.550][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.552][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.554][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.555][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.556][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.559][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.560][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:11.561][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:11.562][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.563][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.566][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.567][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:11.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.583][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-08-09 16:06:11.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:11.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:11.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:11.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:11.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:11.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:11.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:11.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.608][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:11.609][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:11.611][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:11.612][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:11.613][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:11.614][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.615][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.618][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.619][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.620][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.623][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.624][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:11.625][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:11.626][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.628][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.630][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.631][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:11.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.647][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-08-09 16:06:11.649][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:06:11.650][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:06:11.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:11.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:11.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:11.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:11.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:11.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:11.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:11.694][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:11.697][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:11.699][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26eec570aadd234892b573eb0777bd78".
biodb.TRACE[2025-08-09 16:06:11.700][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:11.703][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content".
biodb.DEBUG[2025-08-09 16:06:11.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:11.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:11.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:11.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:11.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:11.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:11.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:11.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:11.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:11.737][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:11.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:11.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:11.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:11.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:11.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:11.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:11.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:11.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:11.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:11.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:11.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:11.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:11.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:11.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:11.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:11.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:11.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:11.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:11.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:11.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:11.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:11.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:11.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:11.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:11.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:11.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:11.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:11.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:11.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:11.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:11.861][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:11.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:11.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:11.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:11.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:11.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:11.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:11.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:11.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:11.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:11.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:11.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:11.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:11.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:11.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:11.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:11.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:11.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:11.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:11.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:11.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:11.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:11.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:11.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:11.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:11.948][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:06:11.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:11.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:11.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:11.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:11.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:11.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:11.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:11.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.975][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:11.976][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:11.977][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:11.978][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:11.979][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:11.981][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.982][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.984][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.985][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.987][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.989][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.990][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:11.992][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:11.993][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.994][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:11.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:11.996][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:11.997][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:11.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.014][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-09 16:06:12.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:12.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.039][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:12.040][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:12.041][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:12.042][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:12.043][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:12.044][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.046][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.048][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.049][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.051][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.053][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.054][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:12.055][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:12.056][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.058][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.060][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.061][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:12.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.077][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-09 16:06:12.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:12.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.102][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:12.103][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:12.105][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:12.106][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:12.107][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:12.108][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.109][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.112][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.113][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.114][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.116][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.118][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:12.119][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:12.120][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.121][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.124][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.125][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:12.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:12.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.141][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-09 16:06:12.142][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:06:12.143][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:06:12.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:12.161][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:12.165][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:12.166][cch$loadFileContent] Trying to load 1 files from cache: [1]: "20c224089a82bbffabd2e7dbc67cfae3".
biodb.TRACE[2025-08-09 16:06:12.168][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:12.171][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content".
biodb.DEBUG[2025-08-09 16:06:12.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:12.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:12.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:12.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:12.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:12.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:12.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:12.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:12.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:12.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:12.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:12.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:12.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:12.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:12.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:12.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:12.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:12.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:12.445][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:12.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:12.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:12.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:12.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:12.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:12.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:12.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:12.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:12.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:12.589][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.590][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:12.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:12.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:12.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:12.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:12.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:12.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:12.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:12.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:12.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:12.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:12.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:12.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:12.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:12.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:12.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:12.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:12.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:12.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:12.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:12.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:12.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:12.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:12.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:12.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:12.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:12.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:12.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:12.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:12.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:12.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:12.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:12.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:12.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:12.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:12.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:12.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:13.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:13.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:13.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:13.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:13.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:13.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:13.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:13.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:13.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:13.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:13.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:13.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:13.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:13.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:13.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:13.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:13.059][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:06:13.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:13.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:13.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:13.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:13.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:13.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:13.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:13.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.093][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:13.095][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:13.096][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:13.097][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:13.099][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:13.100][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.101][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.104][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.105][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.106][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.109][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.110][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:13.111][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:13.112][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.113][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.116][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.117][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:13.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.133][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-09 16:06:13.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:13.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:13.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:13.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:13.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:13.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:13.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:13.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.158][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:13.159][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:13.161][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:13.162][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:13.163][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:13.164][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.165][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.168][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.169][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.170][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.172][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.174][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:13.175][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:13.176][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.177][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.179][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.181][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:13.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.197][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-08-09 16:06:13.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:13.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:13.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:13.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:13.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:13.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:13.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:13.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.223][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:13.224][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:13.225][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:13.226][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:13.227][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:13.229][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.230][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.232][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.234][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.235][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.237][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.238][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:13.240][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:13.241][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.242][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.244][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.246][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:13.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.262][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-08-09 16:06:13.263][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:06:13.264][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:06:13.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:13.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:13.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:13.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:13.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:13.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:13.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:13.283][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:13.286][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:13.288][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2025-08-09 16:06:13.290][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:13.293][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2025-08-09 16:06:13.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:13.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:13.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:13.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:13.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:13.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:13.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:13.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:13.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:13.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:13.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:13.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:13.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:13.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:13.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:13.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:13.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:13.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:13.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:13.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:13.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:13.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:13.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:13.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:13.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:13.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:13.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:13.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:13.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:13.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:13.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:13.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:13.415][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:06:13.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:13.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:13.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:13.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:13.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:13.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:13.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:13.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.441][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:13.442][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:13.443][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:13.445][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:13.446][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:13.447][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.448][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.451][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.452][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.453][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.455][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.457][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:13.458][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:13.459][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.460][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.463][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.464][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:13.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.480][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-08-09 16:06:13.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:13.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:13.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:13.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:13.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:13.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:13.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:13.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.515][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:13.516][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:13.517][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:13.518][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:13.519][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:13.521][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.522][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.525][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.526][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.527][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.529][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.531][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:13.532][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:13.533][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.534][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.537][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.538][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:13.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.554][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-08-09 16:06:13.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:13.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:13.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:13.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:13.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:13.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:13.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:13.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.579][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:13.580][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:13.581][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:13.582][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:13.584][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:13.585][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.586][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.588][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.590][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.591][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.593][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.594][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:13.596][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:06:13.597][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.598][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.600][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.601][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:06:13.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.618][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-09 16:06:13.619][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:06:13.620][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-09 16:06:13.646][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:06:13.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:06:13.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.651][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:06:13.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:06:13.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.656][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:06:13.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:06:13.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-09 16:06:13.667][biodb::testThat]
biodb.INFO [2025-08-09 16:06:13.669][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-08-09 16:06:13.670][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-09 16:06:13.671][biodb::testThat]
biodb.TRACE[2025-08-09 16:06:13.675][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:06:13.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:06:13.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.680][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:06:13.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:06:13.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.685][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:06:13.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:06:13.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:13.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:13.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:13.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:13.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:13.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:13.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:13.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:13.768][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:13.772][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:13.773][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-08-09 16:06:13.775][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:13.777][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-08-09 16:06:13.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:13.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:13.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:13.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:13.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:13.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:13.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:13.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:13.809][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:13.813][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:13.814][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-08-09 16:06:13.816][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:13.818][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-08-09 16:06:13.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:13.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:13.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:13.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:13.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:13.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:13.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:13.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:13.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:13.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:13.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:13.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:13.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:13.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:13.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:13.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:13.879][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:06:13.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:13.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:13.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:13.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:13.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:13.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:13.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:13.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:13.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:13.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:13.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:13.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.905][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:13.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:13.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.910][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:13.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:13.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:13.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.924][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:13.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:13.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.938][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:13.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:13.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:13.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:13.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.949][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:13.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:13.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:13.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:13.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:13.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:13.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.963][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:13.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:13.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.968][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:13.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:13.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:13.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:13.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.992][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:13.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:13.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:13.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:13.997][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:13.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:13.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.002][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:14.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:14.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.007][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:14.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:14.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.011][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:14.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:14.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.016][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:14.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:14.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.021][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:14.022][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:14.023][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:14.024][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:14.026][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:14.027][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:14.028][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:14.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.030][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.032][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:14.033][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:14.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.035][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.036][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:14.037][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:14.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.040][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.041][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:14.042][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:14.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.044][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.046][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:14.047][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:14.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.049][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.050][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:14.052][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:14.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.054][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.055][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:14.056][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:14.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.059][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.060][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:14.061][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:14.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.063][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.065][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:14.066][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:14.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.068][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.070][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:14.071][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:14.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.073][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.074][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:14.076][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:14.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.078][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.079][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:14.080][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:14.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.083][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.084][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:14.085][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:14.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.087][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.088][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:14.090][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:14.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.092][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.093][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:14.094][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:14.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.097][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.098][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:14.099][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:14.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.101][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.103][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:14.104][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:14.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.106][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.107][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:14.109][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:14.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.111][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.112][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:14.113][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:14.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.116][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.117][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:14.118][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:14.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.120][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.122][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:14.123][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:14.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.125][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.126][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:14.127][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:14.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.130][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.131][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:14.132][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:14.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.135][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.136][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:14.137][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:14.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.139][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.140][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:14.142][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:14.143][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:14.144][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:14.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.146][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.148][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:14.149][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:14.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.151][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.152][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:14.154][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:14.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.156][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.157][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:14.158][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:14.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.161][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.162][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:14.163][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:14.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.165][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.167][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:14.168][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:14.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.170][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.171][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:14.173][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:14.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.175][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.176][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:14.177][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:14.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.180][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.181][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:14.182][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:14.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.184][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.186][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:14.187][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:14.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.189][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.190][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:14.191][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:14.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.194][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.195][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:14.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:14.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:14.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:14.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:14.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:14.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:14.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.211][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:14.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:14.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.216][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:14.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:14.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.221][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:14.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:14.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:14.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:14.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:14.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:14.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:14.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:14.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.241][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:14.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:14.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.246][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:14.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:14.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.250][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:14.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:14.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:14.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:14.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.260][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:14.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:14.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:14.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:14.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.270][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:14.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:14.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:14.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:14.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.280][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:14.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:14.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:14.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:14.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:14.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:14.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:14.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:14.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:14.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:14.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:14.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:14.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:14.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:14.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.315][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:14.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:14.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.327][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:14.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:14.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.333][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:14.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:14.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.339][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:14.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:14.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:14.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:14.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.349][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:14.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:14.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.354][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:14.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:14.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:14.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:14.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.363][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:14.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:14.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.375][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-08-09 16:06:14.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:14.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:14.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:14.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:14.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:14.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:14.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:14.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:14.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:14.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:14.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:14.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.400][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:14.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:14.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.405][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:14.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:14.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:14.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:14.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:14.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:14.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.419][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:14.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:14.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.424][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:14.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:14.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.429][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:14.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:14.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:14.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:14.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:14.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:14.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:14.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:14.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.448][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:14.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:14.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.453][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:14.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:14.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:14.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:14.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:14.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:14.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:14.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:14.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:14.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:14.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.478][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:14.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:14.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.482][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:14.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:14.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.487][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:14.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:14.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.492][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:14.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:14.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.497][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:14.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:14.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.502][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:14.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:14.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.507][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:14.508][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:14.509][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:14.510][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:14.511][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:14.512][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:14.514][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:14.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.516][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.517][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:14.518][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:14.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.521][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.522][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:14.523][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:14.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.526][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.527][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:14.528][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:14.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.530][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.532][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:14.533][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:14.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.535][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.536][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:14.538][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:14.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.540][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.541][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:14.542][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:14.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.545][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.546][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:14.547][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:14.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.549][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.550][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:14.552][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:14.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.554][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.555][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:14.556][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:14.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.559][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.560][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:14.561][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:14.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.563][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.565][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:14.566][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:14.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.568][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.570][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:14.571][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:14.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.573][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.574][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:14.576][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:14.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.578][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.579][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:14.580][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:14.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.583][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.584][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:14.585][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:14.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.587][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.589][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:14.590][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:14.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.592][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.593][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:14.595][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:14.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.597][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.598][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:14.599][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:14.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.602][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.603][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:14.604][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:14.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.606][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.608][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:14.609][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:14.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.611][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.612][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:14.614][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:14.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.616][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.617][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:14.618][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:14.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.621][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.622][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:14.623][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:14.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.625][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.627][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:14.628][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:14.629][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:14.630][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:14.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.633][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.634][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:14.635][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:14.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.637][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.639][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:14.640][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:14.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.642][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.643][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:14.645][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:14.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.647][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.648][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:14.649][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:14.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.652][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.653][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:14.654][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:14.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.656][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.658][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:14.659][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:14.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.661][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.662][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:14.664][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:14.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.666][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.667][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:14.668][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:14.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.671][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.672][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:14.673][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:14.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.675][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.677][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:14.678][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:14.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.680][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.681][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:14.683][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:14.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.685][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.686][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:14.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:14.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:14.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:14.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:14.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:14.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:14.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.702][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:14.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:14.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.707][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:14.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:14.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.901][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:14.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:14.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:14.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:14.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:14.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:14.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:14.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:14.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.920][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:14.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:14.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.925][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:14.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:14.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.929][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:14.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:14.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:14.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:14.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.939][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:14.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:14.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:14.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:14.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.949][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:14.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:14.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:14.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:14.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:14.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:14.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.963][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:14.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:14.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.967][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:14.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:14.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.972][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:14.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:14.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:14.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:14.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:14.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:14.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:14.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:14.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:14.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:14.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:14.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:14.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:14.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:14.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:15.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:15.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.005][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:15.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:15.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.010][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:15.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:15.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.015][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:15.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:15.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.020][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:15.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:15.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.024][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:15.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:15.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.029][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:15.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:15.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.034][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:15.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:15.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.039][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:15.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:15.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.043][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:15.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:15.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.053][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-08-09 16:06:15.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:15.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:15.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:15.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:15.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:15.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:15.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:15.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:15.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:15.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:15.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:15.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.078][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:15.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:15.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.083][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:15.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:15.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:15.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:15.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:15.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:15.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.097][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:15.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:15.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.101][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:15.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:15.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:15.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:15.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.111][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:15.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:15.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:15.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:15.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:15.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:15.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.125][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:15.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:15.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.129][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:15.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:15.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:15.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:15.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:15.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:15.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.153][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:15.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:15.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.158][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:15.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:15.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.162][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:15.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:15.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.167][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:15.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:15.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.172][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:15.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:15.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.176][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:15.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:15.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.181][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:15.182][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:15.183][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:15.185][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:15.186][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:15.187][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:15.188][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:15.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.190][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.192][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:15.193][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:15.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.195][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.196][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:15.197][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:15.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.200][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.201][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:15.202][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:15.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.204][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.205][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:15.207][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:15.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.209][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.210][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:15.211][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:15.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.214][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.215][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:15.216][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:15.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.218][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.219][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.221][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.223][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.224][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:15.225][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:15.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.228][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.229][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:15.230][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:15.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.232][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.233][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:15.235][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:15.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.237][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.238][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:15.239][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:15.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.241][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.243][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:15.244][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:15.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.246][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.247][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:15.249][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:15.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.251][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.252][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:15.253][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:15.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.255][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.257][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:15.258][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:15.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.260][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.262][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:15.263][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:15.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.265][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.266][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:15.268][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:15.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.270][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.271][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:15.272][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:15.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.275][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.276][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.277][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.280][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.281][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:15.282][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:15.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.285][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.286][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:15.288][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:15.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.290][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.292][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:15.293][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:15.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.300][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.301][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:15.302][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:15.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.305][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.306][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:15.307][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:15.308][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:15.309][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:15.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.312][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.313][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:15.314][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:15.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.316][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.317][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:15.319][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:15.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.321][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.322][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:15.323][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:15.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.325][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.327][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:15.328][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:15.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.330][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.331][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:15.332][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:15.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.335][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.336][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.337][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.339][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.340][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:15.342][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:15.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.344][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.345][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:15.346][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:15.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.348][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.350][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:15.351][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:15.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.353][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.354][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:15.355][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:15.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.358][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.359][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:15.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:15.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:15.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:15.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:15.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:15.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:15.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.374][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:15.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:15.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.379][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:15.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:15.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.384][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:15.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:15.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:15.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:15.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:15.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:15.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:15.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:15.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.403][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:15.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:15.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.408][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:15.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:15.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.413][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:15.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:15.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.418][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:15.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:15.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:15.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:15.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:15.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:15.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.432][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:15.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:15.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.436][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:15.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:15.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.441][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:15.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:15.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:15.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:15.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:15.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:15.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:15.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:15.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.474][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:15.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:15.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.479][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:15.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:15.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.483][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:15.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:15.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.488][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:15.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:15.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.493][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:15.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:15.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.498][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:15.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:15.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.502][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:15.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:15.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:15.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:15.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.512][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:15.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:15.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.521][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-08-09 16:06:15.523][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:06:15.524][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:06:15.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:15.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:15.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:15.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:15.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:15.538][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:15.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:15.542][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:15.545][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:15.547][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-08-09 16:06:15.549][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:15.551][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-08-09 16:06:15.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:15.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:15.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:15.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:15.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:15.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:15.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:15.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:15.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:15.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:15.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:15.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:15.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:15.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:15.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:15.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:15.610][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:15.614][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:15.615][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-08-09 16:06:15.617][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:15.619][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-08-09 16:06:15.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:15.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:15.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:15.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:15.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:15.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:15.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:15.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:15.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:15.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:15.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:15.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:15.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:15.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:15.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:15.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:15.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:15.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:15.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:15.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:15.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:15.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:15.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:15.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:15.712][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:06:15.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:15.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:15.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:15.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:15.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:15.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:15.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:15.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:15.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:15.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:15.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:15.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.736][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:15.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:15.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.741][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:15.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:15.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:15.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:15.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:15.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:15.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.755][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:15.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:15.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.760][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:15.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:15.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:15.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:15.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.770][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:15.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:15.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:15.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:15.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.779][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:15.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:15.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.784][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:15.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:15.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.789][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:15.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:15.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:15.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:15.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:15.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:15.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.813][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:15.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:15.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.817][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:15.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:15.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.822][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:15.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:15.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.827][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:15.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:15.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.831][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:15.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:15.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.836][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:15.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:15.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.842][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:15.843][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:15.844][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:15.846][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:15.847][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:15.848][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:15.849][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:15.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.851][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.852][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:15.854][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:15.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.856][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.857][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:15.858][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:15.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.861][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.862][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:15.863][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:15.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.865][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.866][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:15.868][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:15.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.870][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.871][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:15.872][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:15.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.874][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.876][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:15.877][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:15.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.879][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.880][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.881][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.884][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.885][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:15.886][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:15.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.888][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.889][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:15.891][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:15.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.893][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.894][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:15.895][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:15.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.897][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.899][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:15.900][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:15.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.902][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.903][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:15.904][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:15.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.907][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.908][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:15.909][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:15.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.911][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.912][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:15.914][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:15.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.916][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.917][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:15.918][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:15.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.920][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.922][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:15.923][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:15.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.925][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.926][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:15.927][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:15.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.930][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.931][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:15.932][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:15.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.934][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.935][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.937][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.939][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.940][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:15.941][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:15.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.943][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.945][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:15.946][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:15.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.948][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.949][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:15.950][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:15.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.953][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.954][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:15.955][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:15.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.957][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.958][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:15.960][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:15.961][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:15.962][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:15.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.964][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.965][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:15.967][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:15.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.969][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.970][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:15.971][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:15.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.973][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.975][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:15.976][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:15.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.978][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.979][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:15.980][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:15.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.983][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.984][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:15.985][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:15.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.987][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.988][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:15.990][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:15.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.992][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.993][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.994][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:15.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:15.996][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:15.998][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:15.999][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.001][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.002][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.004][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.006][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.007][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:16.008][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:16.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.010][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.012][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:16.013][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:16.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.015][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.016][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:16.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:16.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:16.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:16.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:16.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:16.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:16.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.032][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:16.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:16.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.037][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:16.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:16.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.042][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:16.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:16.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.061][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:16.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:16.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.066][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:16.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:16.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.070][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:16.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:16.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:16.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:16.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:16.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:16.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:16.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:16.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.109][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:16.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:16.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.114][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:16.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:16.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.119][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:16.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:16.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.152][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.157][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.161][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.166][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:16.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:16.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:16.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:16.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.176][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:16.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:16.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.180][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:16.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:16.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.185][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:16.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:16.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.190][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:16.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:16.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.200][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-08-09 16:06:16.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:16.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:16.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:16.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:16.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:16.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:16.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:16.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:16.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:16.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:16.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:16.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.224][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:16.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:16.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.229][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:16.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:16.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.243][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:16.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:16.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.248][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:16.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:16.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:16.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:16.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.257][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:16.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:16.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.271][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:16.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:16.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.276][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:16.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:16.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.299][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.304][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.309][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:16.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:16.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.313][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:16.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:16.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.318][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:16.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:16.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.323][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:16.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:16.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.328][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:16.329][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:16.330][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:16.331][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:16.332][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:16.333][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:16.335][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:16.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.337][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.338][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:16.339][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:16.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.341][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.343][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.344][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.346][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.347][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:16.348][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:16.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.351][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.352][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:16.353][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:16.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.355][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.356][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.358][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.360][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.361][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:16.362][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:16.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.364][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.366][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.367][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.369][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.370][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.371][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.374][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.375][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.376][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.378][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.379][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:16.381][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:16.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.383][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.384][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:16.385][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:16.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.387][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.389][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:16.390][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:16.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.392][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.393][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:16.395][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:16.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.397][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.399][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.401][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.403][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:16.404][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:16.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.406][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.407][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:16.408][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:16.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.411][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.412][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.413][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.415][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.416][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:16.418][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:16.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.420][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.421][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.422][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.425][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.426][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.427][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.429][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.430][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.432][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.434][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.435][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:16.436][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:16.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.438][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.440][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:16.441][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:16.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.443][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.444][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:16.445][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:16.447][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:16.448][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:16.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.450][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.451][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:16.453][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:16.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.455][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.456][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.457][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.459][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.460][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:16.462][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:16.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.464][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.465][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:16.466][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:16.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.469][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.470][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.471][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.473][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.474][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:16.476][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:16.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.478][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.479][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.480][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.483][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.484][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.485][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.487][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.489][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.490][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.492][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.493][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:16.495][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:16.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.502][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.503][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:16.504][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:16.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.506][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.507][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:16.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:16.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:16.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:16.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:16.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:16.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:16.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.523][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:16.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:16.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.527][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:16.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:16.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.532][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:16.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:16.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.551][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:16.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:16.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.556][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:16.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:16.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.560][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:16.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:16.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.565][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:16.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:16.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:16.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:16.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:16.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:16.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.593][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:16.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:16.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.598][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:16.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:16.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.603][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:16.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:16.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.636][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.641][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.645][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.650][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:16.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:16.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.655][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:16.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:16.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:16.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:16.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.664][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:16.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:16.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.669][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:16.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:16.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.674][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:16.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:16.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.684][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-08-09 16:06:16.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:16.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:16.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:16.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:16.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:16.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:16.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:16.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:16.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:16.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:16.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:16.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.709][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:16.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:16.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.713][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:16.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:16.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.727][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:16.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:16.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.732][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:16.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:16.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:16.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:16.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:16.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:16.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.756][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:16.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:16.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.760][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:16.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:16.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.784][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.789][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.793][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:16.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:16.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.798][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:16.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:16.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.803][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:16.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:16.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.807][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:16.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:16.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.812][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:16.813][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:16.814][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:16.816][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:16.817][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:16.818][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:16.819][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:16.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.821][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.823][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:16.824][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:16.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.826][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.827][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.828][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.831][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.832][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:16.833][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:16.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.835][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.837][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:16.838][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:16.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.840][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.841][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.843][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.845][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.846][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:16.847][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:16.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.849][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.851][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.852][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.854][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.855][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.856][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.859][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.860][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.861][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.863][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.865][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:16.866][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:16.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.868][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.869][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:16.871][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:16.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.873][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.874][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:16.875][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:16.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.878][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.879][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:16.880][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:16.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.882][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.884][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.885][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.887][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.888][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:16.889][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:16.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.896][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.898][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:16.899][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:16.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.901][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.902][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.903][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.906][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.907][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:16.908][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:16.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.910][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.911][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.913][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.915][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.916][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.917][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.919][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.920][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.922][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.924][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.925][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:16.926][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:16.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.929][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.930][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:16.931][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:16.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.933][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.934][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:16.935][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:16.937][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:16.938][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:16.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.940][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.941][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:16.942][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:16.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.945][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.946][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.947][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:16.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.949][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.950][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:16.952][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:16.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.954][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.955][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:16.956][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:16.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.959][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.960][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.961][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:16.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.963][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.964][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.966][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:16.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.968][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.969][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.970][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:16.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.972][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.974][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.975][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:16.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.977][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.978][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:16.979][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:16.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.982][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.983][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:16.984][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:16.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.986][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.987][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:16.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:16.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:16.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:16.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:16.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:16.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:16.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:16.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:17.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.003][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:17.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:17.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.007][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:17.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:17.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.012][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:17.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:17.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:17.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:17.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:17.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:17.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:17.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:17.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.031][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:17.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:17.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.036][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:17.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:17.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.041][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:17.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:17.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:17.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:17.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:17.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:17.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:17.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:17.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:17.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:17.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:17.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:17.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.069][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:17.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:17.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:17.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:17.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:17.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:17.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:17.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:17.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.102][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:17.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:17.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.107][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:17.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:17.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.112][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:17.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:17.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.117][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:17.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:17.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.122][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:17.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:17.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.126][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:17.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:17.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.131][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:17.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:17.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.136][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:17.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:17.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.141][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:17.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:17.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.150][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-08-09 16:06:17.151][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:06:17.153][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:06:17.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:17.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:17.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:17.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:17.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:17.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:17.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:17.171][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:17.174][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:17.175][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-08-09 16:06:17.177][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:17.179][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-08-09 16:06:17.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:17.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:17.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:17.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:17.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:17.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:17.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:17.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:17.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:17.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:17.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:17.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:17.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:17.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:17.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:17.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:17.238][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:17.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:17.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:17.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:17.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:17.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:17.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:17.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:17.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:17.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:17.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:17.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:17.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:17.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:17.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:17.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:17.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:17.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:17.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:17.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:17.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:17.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:17.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:17.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:17.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:17.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:17.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:17.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:17.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:17.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:17.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:17.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:17.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:17.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:17.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:17.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:17.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:17.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:17.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:17.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:17.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:17.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:17.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:17.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:17.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:17.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:17.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:17.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:17.413][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:17.416][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:17.418][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-08-09 16:06:17.419][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:17.422][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-08-09 16:06:17.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:17.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:17.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:17.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:17.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:17.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:17.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:17.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:17.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:17.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:17.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:17.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:17.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:17.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:17.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:17.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:17.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:17.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:17.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:17.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:17.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:17.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:17.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:17.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:17.507][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:06:17.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:17.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:17.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:17.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:17.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:17.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:17.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:17.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:17.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:17.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:17.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:17.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.532][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:17.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:17.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.537][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:17.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:17.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:17.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:17.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:17.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:17.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.551][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:17.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:17.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.556][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:17.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:17.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:17.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:17.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.565][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:17.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:17.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:17.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:17.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:17.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:17.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.579][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:17.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:17.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.584][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:17.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:17.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:17.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:17.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:17.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:17.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.608][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:17.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:17.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.612][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:17.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:17.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.617][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:17.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:17.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.622][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:17.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:17.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.627][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:17.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:17.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.631][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:17.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:17.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.636][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:17.637][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:17.638][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:17.639][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:17.641][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:17.642][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:17.643][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:17.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.645][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.646][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:17.648][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:17.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.650][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.651][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:17.652][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:17.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.655][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.656][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:17.657][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:17.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.659][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.660][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:17.662][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:17.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.664][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.665][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:17.666][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:17.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.668][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.670][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:17.671][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:17.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.673][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.674][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.676][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.678][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.679][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:17.680][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:17.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.683][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.684][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:17.685][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:17.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.687][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.688][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:17.690][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:17.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.692][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.693][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:17.695][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:17.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.697][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.698][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:17.699][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:17.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.702][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.703][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:17.704][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:17.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.706][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.713][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:17.714][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:17.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.716][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.717][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:17.718][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:17.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.721][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.722][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:17.723][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:17.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.725][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.726][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:17.728][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:17.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.730][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.731][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:17.732][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:17.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.735][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.736][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.737][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.739][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.740][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:17.742][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:17.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.744][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.745][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:17.746][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:17.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.748][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.750][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:17.751][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:17.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.753][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.754][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:17.755][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:17.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.758][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.759][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:17.760][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:17.761][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:17.762][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:17.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.765][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.766][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:17.767][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:17.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.769][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.770][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:17.771][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:17.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.774][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.775][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:17.776][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:17.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.778][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.779][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:17.781][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:17.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.783][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.784][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:17.785][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:17.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.787][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.789][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:17.790][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:17.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.792][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.793][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.794][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.797][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.798][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:17.799][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:17.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.801][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.802][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:17.803][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:17.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.806][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.807][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:17.808][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:17.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.810][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.811][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:17.813][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:17.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.815][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.816][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:17.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:17.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:17.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:17.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:17.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:17.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:17.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.832][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:17.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:17.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.836][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:17.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:17.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.841][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:17.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:17.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:17.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:17.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:17.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:17.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:17.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:17.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.860][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:17.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:17.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.864][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:17.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:17.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.869][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:17.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:17.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.874][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:17.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:17.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:17.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:17.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.883][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:17.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:17.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:17.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:17.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:17.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:17.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:17.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:17.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.902][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:17.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:17.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.907][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:17.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:17.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.912][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:17.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:17.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:17.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:17.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:17.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:17.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:17.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:17.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:17.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.945][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:17.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:17.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.950][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:17.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:17.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.955][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:17.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:17.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.960][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:17.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:17.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.964][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:17.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:17.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.969][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:17.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:17.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.974][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:17.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:17.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.979][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:17.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:17.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.983][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:17.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:17.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:17.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:17.993][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2025-08-09 16:06:17.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:17.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:17.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:18.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:18.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:18.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:18.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:18.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:18.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:18.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:18.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:18.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.019][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:18.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:18.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.024][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:18.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:18.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.038][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:18.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:18.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.043][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:18.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:18.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.047][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:18.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:18.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:18.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:18.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.067][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:18.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:18.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.071][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:18.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:18.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.096][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.100][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.110][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:18.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:18.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.115][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:18.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:18.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.120][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:18.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:18.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.124][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:18.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:18.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.129][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:18.130][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:18.131][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:18.132][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:18.133][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:18.135][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:18.136][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:18.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.138][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.139][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:18.141][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:18.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.143][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.144][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.145][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.147][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.149][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:18.150][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:18.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.152][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.153][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:18.154][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:18.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.157][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.158][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.159][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.161][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.162][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:18.164][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:18.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.166][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.167][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.168][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.170][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.172][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.173][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.175][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.176][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.177][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.180][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.181][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:18.182][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:18.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.184][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.185][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:18.187][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:18.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.189][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.190][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:18.191][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:18.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.193][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.195][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:18.196][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:18.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.198][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.199][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.200][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.203][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.204][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:18.205][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:18.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.207][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.208][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:18.210][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:18.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.212][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.213][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.214][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.216][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.218][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:18.219][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:18.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.221][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.222][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.223][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.226][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.227][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.228][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.230][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.231][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.233][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.235][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.236][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:18.237][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:18.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.240][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.241][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:18.242][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:18.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.244][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.245][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:18.247][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:18.248][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:18.249][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:18.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.251][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.252][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:18.253][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:18.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.256][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.257][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.258][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.260][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.261][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:18.263][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:18.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.265][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.266][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:18.267][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:18.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.270][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.272][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.273][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.276][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.277][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.278][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.280][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.281][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.282][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.285][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.286][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.287][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.289][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.290][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:18.292][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:18.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.294][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.295][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:18.296][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:18.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.298][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.300][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:18.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:18.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:18.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:18.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:18.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:18.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:18.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.315][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:18.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:18.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.320][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:18.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:18.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.324][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:18.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:18.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.343][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:18.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:18.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.348][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:18.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:18.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.353][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:18.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:18.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.358][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:18.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:18.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.362][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:18.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:18.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:18.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:18.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.414][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.419][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.424][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.429][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:18.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:18.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.434][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:18.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:18.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.438][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:18.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:18.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.443][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:18.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:18.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.448][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:18.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:18.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.452][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:18.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:18.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.462][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2025-08-09 16:06:18.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:18.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:18.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:18.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:18.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:18.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:18.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:18.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:18.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:18.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:18.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:18.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.487][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:18.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:18.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.492][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:18.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:18.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.510][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:18.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:18.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.515][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:18.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:18.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:18.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:18.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:18.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:18.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.539][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:18.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:18.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.543][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:18.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:18.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.566][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.571][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.576][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:18.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:18.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.580][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:18.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:18.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.585][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:18.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:18.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.590][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:18.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:18.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.594][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:18.595][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:18.597][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:18.598][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:18.599][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:18.600][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:18.601][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:18.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.603][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.605][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:18.606][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:18.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.608][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.609][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.610][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.613][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.614][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:18.615][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:18.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.617][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.618][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:18.619][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:18.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.622][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.623][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.624][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.626][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.627][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:18.629][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:18.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.631][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.632][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.633][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.635][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.636][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.638][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.640][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.641][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.642][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.644][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.646][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:18.647][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:18.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.649][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.650][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:18.651][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:18.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.654][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.655][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:18.656][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:18.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.658][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.659][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:18.660][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:18.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.663][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.664][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.665][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.667][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.668][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:18.670][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:18.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.672][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.673][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:18.674][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:18.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.676][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.678][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.679][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.681][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.682][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:18.683][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:18.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.686][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.687][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.688][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.690][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.691][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.693][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.695][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.696][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.697][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.699][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.701][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:18.702][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:18.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.704][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.705][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:18.706][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:18.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.709][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.710][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:18.711][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:18.712][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:18.713][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:18.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.715][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.717][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:18.718][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:18.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.720][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.721][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.722][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.725][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.726][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:18.727][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:18.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.729][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.730][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:18.732][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:18.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.734][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.735][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.736][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.738][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.740][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.741][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.743][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.744][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.745][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.748][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.749][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.750][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.752][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.753][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:18.755][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:18.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.757][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.758][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:18.759][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:18.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.761][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.763][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:18.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:18.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:18.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:18.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:18.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:18.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:18.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.778][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:18.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:18.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.783][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:18.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:18.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.787][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:18.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:18.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:18.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.807][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:18.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:18.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.811][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:18.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:18.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.816][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:18.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:18.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:18.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:18.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:18.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:18.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:18.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:18.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:18.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:18.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.878][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.883][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.892][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:18.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.897][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:18.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:18.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.902][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:18.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:18.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.907][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:18.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:18.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.911][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:18.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:18.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.916][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:18.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:18.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.921][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:18.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:18.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.930][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2025-08-09 16:06:18.931][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:06:18.932][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:06:18.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:18.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:18.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:18.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:18.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:18.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:18.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:18.956][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:18.959][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:18.961][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-08-09 16:06:18.963][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:18.965][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-08-09 16:06:18.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:18.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:18.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:18.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:18.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:18.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:18.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:18.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:18.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:18.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:18.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:18.996][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:18.999][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:19.001][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-08-09 16:06:19.002][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:19.005][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-08-09 16:06:19.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:19.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:19.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:19.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:19.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:19.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:19.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:19.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:19.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:19.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:19.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:19.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:19.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:19.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:19.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:19.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:19.063][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:06:19.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:19.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:19.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:19.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:19.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:19.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:19.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:19.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:19.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:19.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:19.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:19.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.088][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:19.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:19.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.092][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:19.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:19.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.106][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:19.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:19.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.111][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:19.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:19.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:19.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:19.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:19.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:19.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.134][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:19.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:19.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.139][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:19.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:19.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:19.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:19.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:19.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:19.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.162][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:19.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:19.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.167][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:19.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:19.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.172][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:19.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:19.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.176][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:19.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:19.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.181][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:19.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:19.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.186][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:19.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:19.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.190][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:19.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:19.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.195][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:19.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:19.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.200][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:19.201][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:19.202][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:19.203][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:19.204][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:19.205][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:19.207][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:19.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.209][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.210][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:19.211][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:19.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.213][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.215][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.216][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.218][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.219][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:19.220][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:19.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.223][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.224][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:19.225][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:19.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.227][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.228][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.230][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.232][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.233][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:19.234][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:19.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.236][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.238][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.239][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.241][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.242][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:19.243][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:19.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.246][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.247][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:19.248][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:19.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.250][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.251][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:19.253][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:19.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.255][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.256][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:19.257][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:19.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.260][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.261][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:19.262][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:19.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.264][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.265][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:19.267][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:19.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.269][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.270][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:19.272][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:19.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.276][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.278][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.279][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.283][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.284][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:19.286][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:19.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.288][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.289][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:19.290][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:19.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.293][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.300][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.301][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.303][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.304][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:19.305][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:19.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.308][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.309][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.310][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.312][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.313][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:19.315][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:19.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.317][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.318][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:19.319][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:19.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.322][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.323][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:19.324][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:19.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.326][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.327][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:19.329][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:19.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.331][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.332][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:19.333][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:19.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.335][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.337][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:19.338][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:19.339][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:19.340][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:19.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.342][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.344][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:19.345][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:19.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.347][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.348][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.349][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.352][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.353][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:19.354][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:19.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.356][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.357][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:19.359][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:19.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.361][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.362][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.363][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.365][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.366][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.368][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.370][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.371][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:19.372][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:19.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.374][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.376][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:19.377][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:19.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.379][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.380][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:19.381][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:19.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.384][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.385][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:19.386][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:19.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.388][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.389][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:19.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:19.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:19.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:19.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:19.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:19.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:19.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.405][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:19.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:19.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.409][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:19.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:19.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.414][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:19.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:19.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.433][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:19.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:19.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.438][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:19.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:19.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.442][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:19.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:19.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:19.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:19.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:19.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:19.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:19.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:19.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.471][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:19.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:19.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:19.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:19.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:19.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:19.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.504][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:19.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:19.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.509][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:19.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:19.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.514][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:19.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:19.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.519][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:19.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:19.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.523][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:19.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:19.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.528][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:19.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:19.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:19.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:19.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.537][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:19.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:19.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.542][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:19.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:19.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.552][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-08-09 16:06:19.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:19.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:19.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:19.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:19.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:19.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:19.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:19.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:19.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:19.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:19.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:19.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.576][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:19.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:19.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.581][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:19.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:19.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.595][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:19.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:19.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.600][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:19.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:19.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:19.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:19.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:19.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:19.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.614][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.623][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:19.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:19.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.628][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:19.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:19.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:19.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:19.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:19.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:19.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.652][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:19.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:19.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.657][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:19.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:19.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.661][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:19.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:19.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.666][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:19.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:19.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.671][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:19.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:19.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.676][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:19.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:19.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.681][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:19.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:19.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.685][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:19.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:19.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.695][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:19.696][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:19.697][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:19.698][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:19.699][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:19.700][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:19.702][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:19.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.704][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.705][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:19.706][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:19.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.708][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.710][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.711][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.713][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.714][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:19.715][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:19.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.718][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.719][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:19.720][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:19.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.722][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.723][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.725][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.727][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.728][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:19.729][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:19.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.731][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.732][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.734][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.736][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.737][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:19.738][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:19.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.740][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.742][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:19.743][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:19.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.745][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.746][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:19.747][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:19.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.749][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.751][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:19.752][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:19.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.754][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.755][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:19.756][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:19.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.759][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.760][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:19.761][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:19.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.763][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.764][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:19.766][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:19.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.768][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.769][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.770][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.773][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.774][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:19.775][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:19.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.777][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.778][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:19.780][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:19.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.782][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.783][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.784][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.786][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.787][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:19.789][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:19.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.791][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.792][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.793][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.795][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.797][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:19.798][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:19.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.800][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.801][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:19.802][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:19.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.805][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.806][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:19.807][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:19.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.809][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.810][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:19.812][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:19.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.814][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.815][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:19.816][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:19.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.818][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.820][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:19.821][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:19.822][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:19.823][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:19.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.825][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.827][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:19.828][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:19.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.830][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.831][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.832][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.835][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.836][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:19.837][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:19.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.839][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.840][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:19.841][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:19.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.844][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.845][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.846][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.848][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.849][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:19.851][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:19.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.853][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.854][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.855][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.857][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.859][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:19.860][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:19.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.862][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.863][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:19.864][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:19.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.867][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.868][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:19.869][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:19.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.871][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.872][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:19.874][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:19.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.876][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.877][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:19.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:19.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:19.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:19.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:19.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:19.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:19.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.893][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:19.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:19.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.897][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:19.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:19.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.902][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:19.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:19.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:19.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.921][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:19.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:19.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.926][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:19.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:19.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.931][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:19.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:19.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:19.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:19.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:19.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:19.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:19.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:19.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:19.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.964][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:19.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:19.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.969][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:19.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:19.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.973][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:19.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:19.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:19.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:19.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:19.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:19.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:19.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:19.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:20.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:20.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:20.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.007][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:20.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:20.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.012][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:20.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:20.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.016][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:20.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:20.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.021][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:20.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:20.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.026][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:20.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:20.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.031][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:20.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:20.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.036][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:20.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:20.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.040][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:20.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:20.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:20.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:20.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.055][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-08-09 16:06:20.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:20.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:20.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:20.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:20.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:20.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:20.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:20.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:20.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:20.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:20.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:20.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.085][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:20.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:20.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.090][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:20.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:20.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:20.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:20.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:20.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:20.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.104][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:20.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:20.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.109][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:20.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:20.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:20.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:20.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:20.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:20.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.123][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:20.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:20.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:20.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:20.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.132][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:20.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:20.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.137][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:20.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:20.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:20.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:20.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:20.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:20.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.161][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:20.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:20.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.165][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:20.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:20.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.170][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:20.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:20.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.175][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:20.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:20.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.179][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:20.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:20.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.184][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:20.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:20.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.189][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:20.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:20.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.193][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:20.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:20.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.198][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:20.199][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:20.200][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:20.201][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:20.203][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:20.204][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:20.205][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:20.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.207][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.209][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:20.210][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:20.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.212][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.213][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:20.214][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:20.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.217][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.218][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:20.219][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:20.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.221][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.222][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:20.224][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:20.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.226][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.227][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:20.228][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:20.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.230][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.231][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:20.233][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:20.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.235][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.236][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.237][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.240][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.241][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:20.242][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:20.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.244][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.245][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:20.247][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:20.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.249][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.250][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:20.251][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:20.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.253][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.254][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:20.256][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:20.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.258][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.259][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:20.260][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:20.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.262][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.264][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:20.265][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:20.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.267][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.268][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:20.269][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:20.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.272][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.273][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:20.275][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:20.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.277][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.279][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:20.280][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:20.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.282][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.283][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:20.284][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:20.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.287][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.288][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:20.289][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:20.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.291][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.292][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:20.294][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:20.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.296][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.297][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.298][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.301][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.302][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:20.303][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:20.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.305][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.306][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:20.308][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:20.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.310][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.311][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:20.312][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:20.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.315][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.316][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:20.317][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:20.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.319][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.320][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:20.321][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:20.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.324][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.325][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:20.326][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:20.327][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:20.328][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:20.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.331][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.332][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:20.333][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:20.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.335][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.336][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:20.338][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:20.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.340][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.341][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:20.342][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:20.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.344][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.345][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:20.347][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:20.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.349][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.350][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:20.351][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:20.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.353][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.355][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.356][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.358][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.359][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:20.360][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:20.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.363][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.364][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:20.365][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:20.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.367][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.369][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:20.370][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:20.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.372][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.373][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:20.374][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:20.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.377][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.378][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:20.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:20.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:20.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:20.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:20.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:20.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:20.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.393][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:20.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:20.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.398][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:20.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:20.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.403][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:20.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:20.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:20.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:20.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:20.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:20.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:20.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:20.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.422][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:20.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:20.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.427][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:20.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:20.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.431][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:20.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:20.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.436][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:20.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:20.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.441][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:20.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:20.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:20.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:20.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.450][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:20.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:20.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:20.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:20.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.460][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:20.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:20.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:20.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:20.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:20.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:20.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:20.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:20.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.499][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:20.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:20.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.504][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:20.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:20.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.509][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:20.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:20.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.514][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:20.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:20.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.518][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:20.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:20.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.523][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:20.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:20.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.528][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:20.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:20.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:20.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:20.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.537][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:20.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:20.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.547][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-08-09 16:06:20.548][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:06:20.549][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:06:20.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:20.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:20.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:20.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:20.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:20.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:20.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:20.567][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:20.571][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:20.572][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-08-09 16:06:20.574][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:20.576][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-08-09 16:06:20.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:20.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:20.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:20.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:20.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:20.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:20.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:20.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:20.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:20.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:20.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:20.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:20.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:20.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:20.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:20.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:20.636][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:20.639][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:20.641][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-08-09 16:06:20.642][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:20.645][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-08-09 16:06:20.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:20.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:20.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:20.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:20.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:20.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:20.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:20.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:20.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:20.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:20.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:20.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:20.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:20.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:20.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:20.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:20.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:20.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:20.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:20.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:20.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:20.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:20.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:20.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:20.732][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:06:20.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:20.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:20.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:20.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:20.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:20.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:20.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:20.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:20.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:20.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:20.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:20.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.757][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:20.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:20.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.761][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:20.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:20.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:20.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:20.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:20.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:20.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.776][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:20.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:20.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.780][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:20.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:20.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:20.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:20.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:20.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:20.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:20.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:20.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:20.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:20.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.804][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:20.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:20.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.809][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:20.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:20.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:20.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:20.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:20.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:20.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.832][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:20.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:20.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.837][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:20.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:20.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:20.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:20.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.846][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:20.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:20.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.851][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:20.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:20.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.855][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:20.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:20.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.860][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:20.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:20.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.865][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:20.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:20.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.870][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:20.871][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:20.872][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:20.873][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:20.874][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:20.876][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:20.877][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:20.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.879][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.885][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:20.887][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:20.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.889][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.890][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:20.891][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:20.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.893][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.895][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:20.896][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:20.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.898][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.899][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:20.900][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:20.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.903][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.904][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:20.905][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:20.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.907][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.908][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:20.910][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:20.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.912][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.913][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.914][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.916][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.917][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:20.919][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:20.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.921][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.922][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:20.923][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:20.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.925][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.927][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:20.928][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:20.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.930][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.931][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:20.932][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:20.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.935][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.936][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:20.937][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:20.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.939][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.940][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:20.942][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:20.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.944][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.945][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:20.946][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:20.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.948][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.950][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:20.951][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:20.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.953][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.954][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:20.955][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:20.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.958][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.959][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:20.960][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:20.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.962][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.963][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:20.965][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:20.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.967][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.968][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:20.969][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:20.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.971][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.972][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.974][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:20.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.976][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.977][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:20.978][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:20.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.981][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.982][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:20.983][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:20.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.985][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.986][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:20.987][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:20.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.990][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.991][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:20.992][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:20.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.994][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:20.995][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:20.997][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:20.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:20.999][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.000][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:21.001][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:21.002][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:21.004][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:21.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.006][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.007][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:21.008][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:21.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.010][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.012][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.013][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.015][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.016][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:21.017][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:21.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.020][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.021][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:21.022][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:21.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.024][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.025][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.027][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.029][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.030][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.031][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.033][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.035][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.036][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.038][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.039][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.040][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.043][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.044][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.045][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.047][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.048][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:21.050][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:21.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.052][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.053][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:21.054][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:21.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.056][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.058][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:21.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:21.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:21.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:21.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:21.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:21.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:21.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.073][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:21.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:21.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.078][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:21.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:21.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.082][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:21.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:21.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.101][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:21.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:21.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.106][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:21.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:21.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.111][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:21.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:21.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:21.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:21.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:21.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:21.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:21.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:21.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.135][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.144][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.149][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.154][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.187][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.192][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.196][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.201][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:21.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:21.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.206][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:21.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:21.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.211][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:21.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:21.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.216][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:21.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:21.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.220][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:21.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:21.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.225][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:21.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:21.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.235][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-08-09 16:06:21.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:21.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:21.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:21.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:21.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:21.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:21.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:21.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:21.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:21.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:21.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:21.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.260][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:21.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:21.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.266][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:21.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:21.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.285][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:21.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:21.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.290][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:21.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:21.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:21.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:21.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:21.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:21.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.308][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.313][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.318][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.341][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.346][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.350][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:21.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:21.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.355][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:21.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:21.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.360][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:21.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:21.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:21.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:21.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.369][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:21.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:21.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.374][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:21.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:21.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.378][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:21.380][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:21.381][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:21.382][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:21.383][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:21.384][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:21.385][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:21.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.388][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.389][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:21.390][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:21.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.392][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.393][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.395][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.397][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.398][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:21.399][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:21.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.402][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.403][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:21.404][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:21.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.406][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.407][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.409][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.411][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.412][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.413][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.415][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.417][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.418][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.420][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.421][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.422][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.425][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.426][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.427][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.429][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.430][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:21.432][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:21.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.434][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.435][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:21.436][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:21.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.438][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.439][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:21.441][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:21.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.443][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.444][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:21.445][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:21.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.448][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.449][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:21.450][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:21.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.452][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.453][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.454][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.457][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.458][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:21.459][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:21.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.461][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.462][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:21.464][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:21.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.466][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.467][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.468][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.471][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.472][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.473][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.475][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.476][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.478][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.480][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.481][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.482][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.485][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.486][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.487][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.489][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.490][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:21.492][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:21.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.494][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.495][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:21.496][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:21.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.499][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.500][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:21.501][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:21.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.503][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.504][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:21.506][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:21.507][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:21.508][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:21.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.510][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.511][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:21.513][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:21.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.515][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.516][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.517][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.519][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.521][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:21.522][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:21.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.524][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.525][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:21.526][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:21.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.529][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.530][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.531][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.533][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.534][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.536][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.538][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.539][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.540][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.542][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.544][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.545][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.547][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.548][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.549][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.552][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.553][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:21.554][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:21.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.556][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.557][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:21.559][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:21.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.561][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.562][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:21.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:21.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:21.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:21.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:21.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:21.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:21.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.578][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:21.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:21.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.583][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:21.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:21.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.587][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:21.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:21.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.607][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:21.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:21.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.612][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:21.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:21.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.616][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:21.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:21.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.621][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:21.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:21.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:21.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:21.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:21.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:21.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.651][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.655][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.660][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.699][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.704][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.708][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:21.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:21.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.718][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:21.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:21.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.723][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:21.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:21.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.728][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:21.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:21.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.732][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:21.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:21.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.737][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:21.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:21.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.747][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-08-09 16:06:21.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:21.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:21.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:21.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:21.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:21.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:21.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:21.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:21.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:21.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:21.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:21.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.771][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:21.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:21.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.775][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:21.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:21.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.789][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:21.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:21.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.794][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:21.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:21.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:21.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:21.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.803][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:21.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:21.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.817][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.822][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.840][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.845][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.850][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.854][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:21.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:21.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.859][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:21.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:21.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:21.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:21.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.868][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:21.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:21.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.873][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:21.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:21.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.878][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:21.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:21.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.882][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:21.883][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:21.885][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:21.886][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:21.887][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:21.888][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:21.889][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:21.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.891][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.893][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:21.894][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:21.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.896][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.897][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.898][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.901][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.902][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:21.903][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:21.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.905][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.906][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:21.908][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:21.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.910][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.911][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.912][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.914][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.916][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.917][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.919][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.920][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.921][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.924][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.925][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.926][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.928][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.929][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.931][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.933][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.934][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:21.935][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:21.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.937][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.939][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:21.940][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:21.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.942][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.943][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:21.944][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:21.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.947][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.948][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:21.949][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:21.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.951][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.952][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:21.954][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:21.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.956][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.957][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.958][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:21.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.960][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.962][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:21.963][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:21.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.965][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.966][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:21.967][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:21.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.970][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.971][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.972][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:21.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.974][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.975][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.977][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:21.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.979][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.980][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.981][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:21.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.984][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.985][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.986][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:21.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.988][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.989][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.990][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:21.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.993][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.994][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:21.995][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:21.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:21.997][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:21.999][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:22.000][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:22.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.002][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.003][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:22.004][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:22.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.007][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.008][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:22.009][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:22.010][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:22.011][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:22.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.014][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.015][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:22.016][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:22.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.018][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.019][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:22.021][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:22.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.023][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.024][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:22.025][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:22.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.027][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.029][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:22.030][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:22.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.032][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.033][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:22.035][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:22.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.037][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.038][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.039][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.042][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.043][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:22.044][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:22.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.046][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.048][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:22.049][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:22.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.051][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.057][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:22.058][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:22.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.061][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.062][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:22.063][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:22.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.065][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.066][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:22.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:22.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:22.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:22.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:22.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:22.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:22.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.082][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:22.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:22.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.087][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:22.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:22.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.091][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:22.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:22.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:22.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:22.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:22.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:22.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:22.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:22.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.111][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:22.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:22.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.115][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:22.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:22.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.120][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:22.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:22.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:22.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:22.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:22.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:22.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:22.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:22.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:22.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:22.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.144][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:22.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:22.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.148][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:22.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:22.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:22.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:22.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:22.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:22.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:22.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:22.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.181][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:22.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:22.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.186][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:22.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:22.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.191][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:22.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:22.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.196][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:22.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:22.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.200][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:22.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:22.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.205][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:22.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:22.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.210][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:22.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:22.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.214][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:22.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:22.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.219][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:22.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:22.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.228][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-08-09 16:06:22.229][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:06:22.231][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:06:22.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:22.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:22.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:22.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:22.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:22.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:22.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:22.248][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:22.252][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:22.253][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-08-09 16:06:22.255][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:22.257][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-08-09 16:06:22.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:22.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:22.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:22.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:22.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:22.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:22.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:22.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:22.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:22.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:22.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:22.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:22.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:22.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:22.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:22.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:22.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:22.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:22.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:22.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:22.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:22.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:22.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:22.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:22.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:22.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:22.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:22.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:22.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:22.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:22.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:22.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:22.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:22.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:22.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:22.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:22.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:22.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:22.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:22.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:22.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:22.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:22.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:22.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:22.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:22.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:22.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:22.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:22.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:22.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:22.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:22.450][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:22.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:22.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:22.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:22.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:22.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:22.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:22.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:22.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:22.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:22.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:22.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:22.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:22.503][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:22.506][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:22.508][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-08-09 16:06:22.510][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:22.512][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-08-09 16:06:22.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:22.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:22.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:22.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:22.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:22.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:22.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:22.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:22.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:22.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:22.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:22.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:22.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:22.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:22.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:22.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:22.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:22.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:22.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:22.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:22.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:22.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:22.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:22.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:22.598][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:06:22.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:22.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:22.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:22.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:22.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:22.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:22.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:22.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:22.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:22.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:22.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:22.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.622][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:22.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:22.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.627][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:22.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:22.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:22.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:22.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:22.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:22.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.641][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:22.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:22.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.646][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:22.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:22.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:22.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:22.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.655][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:22.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:22.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:22.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:22.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:22.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:22.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.669][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:22.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:22.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.673][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:22.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:22.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:22.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:22.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:22.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:22.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.697][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:22.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:22.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.701][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:22.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:22.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:22.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:22.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.711][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:22.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:22.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.715][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:22.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:22.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.720][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:22.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:22.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.725][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:22.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:22.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.729][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:22.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:22.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.734][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:22.735][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:22.736][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:22.737][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:22.739][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:22.740][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:22.741][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:22.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.743][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.744][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:22.746][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:22.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.748][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.749][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:22.750][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:22.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.752][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.754][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:22.755][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:22.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.757][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.758][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:22.759][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:22.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.762][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.763][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:22.764][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:22.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.766][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.767][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:22.769][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:22.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.771][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.772][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.773][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.775][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.777][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:22.778][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:22.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.780][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.781][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:22.783][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:22.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.785][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.786][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:22.787][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:22.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.789][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.791][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:22.792][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:22.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.794][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.795][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:22.796][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:22.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.799][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.800][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:22.801][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:22.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.803][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.804][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:22.806][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:22.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.808][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.809][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:22.810][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:22.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.813][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.814][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:22.815][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:22.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.817][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.818][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:22.820][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:22.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.822][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.823][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:22.824][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:22.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.826][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.828][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:22.829][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:22.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.831][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.832][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.834][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.836][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.837][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:22.838][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:22.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.840][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.841][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:22.843][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:22.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.845][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.846][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:22.848][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:22.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.850][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.852][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:22.853][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:22.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.855][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.856][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:22.858][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:22.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.860][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.861][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:22.862][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:22.864][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:22.865][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:22.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.867][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.868][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:22.869][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:22.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.872][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.873][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:22.879][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:22.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.882][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.883][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:22.884][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:22.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.887][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.888][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:22.889][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:22.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.891][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.892][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:22.894][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:22.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.896][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.897][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:22.898][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:22.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.900][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.901][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.903][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:22.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.905][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.906][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:22.907][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:22.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.910][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.911][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:22.912][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:22.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.914][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.915][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:22.917][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:22.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.919][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.920][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:22.921][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:22.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.923][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.925][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:22.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:22.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:22.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:22.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:22.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:22.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:22.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.940][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:22.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:22.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.945][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:22.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:22.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.949][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:22.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:22.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:22.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:22.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:22.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:22.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:22.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:22.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.968][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:22.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:22.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.973][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:22.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:22.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.978][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:22.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:22.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:22.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:22.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:22.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:22.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:22.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:22.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:22.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:22.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:22.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:22.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:23.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:23.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:23.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:23.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.012][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:23.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:23.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.017][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:23.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:23.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.022][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:23.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:23.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.056][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.061][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.066][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.071][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:23.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:23.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.076][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:23.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:23.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.080][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:23.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:23.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.085][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:23.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:23.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.090][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:23.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:23.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.095][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:23.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:23.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.106][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2025-08-09 16:06:23.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:23.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:23.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:23.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:23.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:23.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:23.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:23.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:23.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:23.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:23.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:23.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.130][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:23.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:23.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.135][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:23.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:23.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.149][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:23.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:23.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.154][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:23.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:23.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.159][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:23.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:23.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:23.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:23.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:23.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:23.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:23.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:23.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.178][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:23.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:23.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.182][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:23.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:23.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.206][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.211][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.216][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:23.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:23.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.220][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:23.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:23.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.225][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:23.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:23.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.230][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:23.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:23.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.235][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:23.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:23.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.239][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:23.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:23.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.244][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:23.246][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:23.247][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:23.248][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:23.249][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:23.250][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:23.251][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:23.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.254][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.255][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:23.256][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:23.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.259][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.260][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.261][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.263][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.264][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:23.266][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:23.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.269][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.271][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:23.294][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:23.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.296][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.297][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:23.299][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:23.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.301][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.302][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:23.303][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:23.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.305][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.307][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.308][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.310][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.311][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.313][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.315][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.316][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.317][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.319][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.321][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:23.322][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:23.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.324][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.325][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:23.326][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:23.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.329][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.330][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:23.331][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:23.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.333][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.334][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:23.336][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:23.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.338][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.339][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:23.340][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:23.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.343][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.344][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.345][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.347][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.348][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:23.350][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:23.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.352][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.353][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:23.354][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:23.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.356][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.358][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:23.359][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:23.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.361][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.362][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:23.363][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:23.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.366][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.367][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.368][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.370][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.371][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.373][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.375][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.376][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.377][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.379][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.381][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:23.382][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:23.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.384][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.385][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:23.386][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:23.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.389][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.390][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:23.391][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:23.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.393][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.394][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:23.396][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:23.397][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:23.398][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:23.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.400][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.401][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:23.403][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:23.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.405][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.406][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.407][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.409][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.411][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:23.412][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:23.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.414][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.415][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:23.416][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:23.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.419][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.420][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:23.421][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:23.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.423][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.424][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.426][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.428][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.429][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.430][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.432][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.434][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.435][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.437][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.438][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:23.439][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:23.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.442][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.443][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:23.444][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:23.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.446][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.447][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:23.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:23.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:23.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:23.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:23.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:23.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:23.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.463][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:23.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:23.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.468][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:23.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:23.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.472][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:23.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:23.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.491][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:23.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:23.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.496][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:23.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:23.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.501][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:23.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:23.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:23.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:23.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:23.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:23.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:23.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:23.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:23.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:23.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.525][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:23.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:23.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:23.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:23.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.563][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.568][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.573][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.578][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:23.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:23.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.582][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:23.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:23.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.587][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:23.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:23.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.592][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:23.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:23.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.597][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:23.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:23.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.602][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:23.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:23.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.611][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2025-08-09 16:06:23.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:23.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:23.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:23.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:23.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:23.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:23.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:23.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:23.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:23.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:23.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:23.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.636][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:23.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:23.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.641][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:23.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:23.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.655][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:23.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:23.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.660][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:23.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:23.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.665][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:23.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:23.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:23.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:23.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:23.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:23.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.679][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:23.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:23.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.689][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:23.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:23.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.694][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:23.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:23.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.717][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.722][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.727][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:23.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:23.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.731][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:23.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:23.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.736][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:23.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:23.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.741][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:23.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:23.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.745][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:23.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:23.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.750][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:23.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:23.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.755][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:23.756][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:23.757][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:23.758][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:23.759][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:23.760][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:23.761][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:23.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.764][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.765][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:23.766][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:23.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.768][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.769][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.771][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.773][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.774][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:23.775][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:23.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.778][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.779][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:23.780][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:23.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.782][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.783][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:23.784][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:23.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.787][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.788][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:23.789][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:23.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.791][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.792][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.794][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.796][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.797][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.798][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.801][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.802][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.803][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.805][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.806][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:23.807][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:23.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.810][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.811][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:23.812][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:23.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.814][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.815][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:23.817][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:23.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.819][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.820][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:23.821][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:23.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.824][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.825][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:23.826][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:23.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.828][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.829][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.831][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.833][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.834][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:23.835][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:23.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.837][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.839][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:23.840][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:23.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.842][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.843][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:23.844][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:23.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.847][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.848][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:23.849][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:23.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.851][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.853][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.854][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.856][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.857][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.858][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.861][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.862][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.863][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.865][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.867][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:23.868][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:23.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.870][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.871][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:23.872][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:23.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.875][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.876][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:23.877][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:23.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.879][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.880][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:23.882][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:23.883][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:23.884][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:23.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.886][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.887][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:23.889][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:23.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.891][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.892][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.893][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.896][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.897][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:23.898][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:23.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.900][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.901][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:23.903][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:23.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.905][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.906][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:23.907][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:23.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.909][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.911][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.912][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:23.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.914][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.915][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.916][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:23.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.919][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.920][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.921][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:23.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.923][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.924][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:23.926][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:23.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.928][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.929][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:23.930][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:23.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.932][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.934][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:23.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:23.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:23.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:23.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:23.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:23.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:23.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.949][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:23.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:23.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.954][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:23.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:23.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.959][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:23.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:23.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:23.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.978][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:23.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:23.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.982][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:23.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:23.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.987][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:23.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:23.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:23.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:23.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:23.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:23.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:23.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:23.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:24.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:24.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:24.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:24.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:24.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:24.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:24.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:24.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:24.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:24.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:24.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:24.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:24.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:24.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.049][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:24.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:24.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.054][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:24.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:24.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.059][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:24.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:24.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.063][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:24.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:24.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.068][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:24.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:24.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.073][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:24.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:24.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.083][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:24.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:24.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.087][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:24.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:24.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.092][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:24.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:24.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.102][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2025-08-09 16:06:24.103][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:06:24.104][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-09 16:06:24.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:24.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:24.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:24.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:24.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:24.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:24.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:24.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:24.184][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:24.187][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:24.189][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-08-09 16:06:24.190][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:24.193][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-08-09 16:06:24.196][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:24.199][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:24.201][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-08-09 16:06:24.202][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:24.204][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-08-09 16:06:24.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:24.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:24.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:24.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:24.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:24.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:24.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:24.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:24.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:24.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:24.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:24.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:24.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:24.245][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:24.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:24.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:24.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:24.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:24.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:24.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:24.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:24.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:24.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:24.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:24.290][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:06:24.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:24.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:24.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:24.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:24.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:24.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:24.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:24.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:24.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:24.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:24.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:24.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.315][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:24.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:24.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.320][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:24.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:24.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:24.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:24.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:24.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:24.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.334][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:24.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:24.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.339][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:24.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:24.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:24.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:24.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:24.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:24.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:24.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:24.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.358][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:24.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:24.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.362][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:24.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:24.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.367][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:24.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:24.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:24.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:24.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:24.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:24.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.391][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:24.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:24.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.395][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:24.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:24.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.400][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:24.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:24.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.405][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:24.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:24.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.410][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:24.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:24.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.414][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:24.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:24.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.419][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:24.420][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:24.421][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:24.422][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:24.423][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:24.425][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:24.426][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:24.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.428][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.429][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:24.430][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:24.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.433][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.434][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:24.435][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:24.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.437][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.439][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:24.440][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:24.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.442][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.443][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:24.444][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:24.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.447][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.448][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:24.449][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:24.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.451][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.452][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:24.454][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:24.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.456][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.457][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:24.458][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:24.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.461][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.462][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.463][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.465][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.466][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:24.468][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:24.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.470][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.471][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:24.472][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:24.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.475][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.481][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:24.483][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:24.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.485][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.486][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:24.487][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:24.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.490][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.491][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:24.492][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:24.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.494][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.495][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:24.497][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:24.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.499][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.500][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:24.501][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:24.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.503][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.505][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:24.506][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:24.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.508][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.509][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:24.510][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:24.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.513][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.514][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:24.515][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:24.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.517][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.518][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:24.520][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:24.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.522][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.523][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.524][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.526][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.528][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:24.529][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:24.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.531][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.532][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:24.533][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:24.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.536][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.537][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:24.538][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:24.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.540][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.541][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:24.543][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:24.544][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:24.545][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:24.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.547][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.548][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:24.550][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:24.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.552][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.553][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:24.554][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:24.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.556][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.558][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:24.559][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:24.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.561][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.562][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:24.563][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:24.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.566][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.567][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:24.568][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:24.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.570][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.572][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:24.573][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:24.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.575][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.576][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:24.577][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:24.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.580][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.581][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.582][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.584][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.585][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:24.587][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:24.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.589][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.590][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:24.591][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:24.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.593][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.594][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:24.596][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:24.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.598][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.599][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:24.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:24.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:24.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:24.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:24.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:24.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:24.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.615][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:24.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:24.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.619][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:24.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:24.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.624][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:24.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:24.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:24.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:24.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:24.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:24.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:24.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:24.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.643][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:24.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:24.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.648][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:24.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:24.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.653][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:24.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:24.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:24.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:24.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:24.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:24.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:24.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:24.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:24.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:24.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:24.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:24.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.682][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:24.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:24.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.687][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:24.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:24.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.691][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:24.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:24.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.696][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:24.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:24.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:24.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:24.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:24.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:24.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:24.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:24.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.730][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:24.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:24.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.734][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:24.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:24.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.739][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:24.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:24.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.744][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:24.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:24.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.749][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:24.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:24.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:24.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:24.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.758][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:24.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:24.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.763][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:24.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:24.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.767][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:24.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:24.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.778][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-08-09 16:06:24.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:24.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:24.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:24.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:24.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:24.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:24.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:24.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:24.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:24.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:24.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:24.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.802][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:24.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:24.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.807][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:24.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:24.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:24.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:24.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:24.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:24.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.821][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:24.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:24.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.826][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:24.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:24.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:24.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:24.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:24.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:24.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:24.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:24.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:24.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:24.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.849][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:24.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:24.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.854][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:24.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:24.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:24.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:24.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:24.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:24.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.883][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:24.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:24.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.888][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:24.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:24.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.893][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:24.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:24.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.897][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:24.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:24.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.902][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:24.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:24.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.907][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:24.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:24.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.912][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:24.913][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:24.914][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:24.915][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:24.916][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:24.917][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:24.918][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:24.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.921][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.922][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:24.923][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:24.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.925][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.926][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:24.928][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:24.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.930][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.931][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:24.932][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:24.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.934][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.936][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:24.937][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:24.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.939][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.940][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:24.942][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:24.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.944][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.945][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:24.946][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:24.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.948][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.950][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:24.951][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:24.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.953][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.954][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.955][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:24.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.958][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.959][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:24.960][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:24.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.962][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.963][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:24.965][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:24.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.967][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.968][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:24.969][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:24.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.972][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.973][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:24.974][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:24.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.976][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.977][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:24.979][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:24.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.981][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.982][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:24.983][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:24.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.985][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.987][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:24.988][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:24.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.990][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.991][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:24.993][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:24.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:24.995][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:24.997][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:24.998][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:24.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.000][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.001][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:25.002][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:25.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.005][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.006][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:25.007][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:25.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.009][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.010][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.012][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.014][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.015][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:25.016][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:25.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.019][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.020][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:25.021][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:25.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.023][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.024][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:25.026][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:25.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.028][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.029][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:25.030][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:25.031][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:25.032][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:25.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.035][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.036][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:25.037][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:25.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.039][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.040][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:25.042][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:25.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.044][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.045][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:25.046][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:25.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.049][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.050][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:25.051][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:25.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.053][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.055][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:25.056][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:25.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.058][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.059][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:25.060][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:25.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.063][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.064][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:25.065][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:25.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.067][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.068][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.070][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.072][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.073][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:25.074][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:25.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.077][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.078][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:25.079][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:25.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.081][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.083][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:25.084][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:25.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.086][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.087][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:25.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:25.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:25.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:25.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:25.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:25.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:25.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.103][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:25.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:25.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.108][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:25.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:25.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.113][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:25.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:25.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:25.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:25.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:25.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:25.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:25.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:25.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.132][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:25.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:25.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.137][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:25.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:25.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.141][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:25.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:25.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.146][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:25.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:25.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.151][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:25.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:25.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:25.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:25.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.161][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:25.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:25.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.166][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:25.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:25.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:25.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:25.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.175][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:25.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:25.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.180][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:25.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:25.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.185][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:25.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:25.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:25.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:25.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:25.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:25.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:25.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:25.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.219][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:25.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:25.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.223][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:25.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:25.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.228][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:25.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:25.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.233][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:25.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:25.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.238][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:25.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:25.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.243][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:25.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:25.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.248][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:25.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:25.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.252][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:25.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:25.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.257][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:25.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:25.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.274][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-08-09 16:06:25.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:25.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:25.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:25.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:25.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:25.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:25.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:25.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:25.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:25.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:25.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:25.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.298][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:25.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:25.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.303][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:25.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:25.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:25.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:25.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:25.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:25.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.317][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:25.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:25.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.322][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:25.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:25.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:25.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:25.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:25.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:25.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:25.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:25.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:25.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:25.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.345][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:25.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:25.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.350][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:25.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:25.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:25.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:25.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:25.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:25.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.374][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:25.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:25.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.378][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:25.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:25.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.383][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:25.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:25.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:25.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:25.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.392][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:25.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:25.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.397][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:25.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:25.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.402][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:25.403][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:25.404][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:25.405][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:25.406][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:25.407][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:25.409][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:25.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.411][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.412][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:25.413][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:25.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.416][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.417][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:25.418][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:25.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.420][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.421][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:25.423][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:25.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.425][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.426][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:25.427][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:25.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.430][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.431][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:25.432][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:25.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.434][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.435][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:25.437][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:25.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.439][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.440][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:25.441][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:25.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.443][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.445][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.446][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.448][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.449][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:25.450][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:25.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.453][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.454][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:25.455][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:25.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.457][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.458][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:25.460][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:25.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.462][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.463][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:25.464][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:25.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.467][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.468][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:25.469][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:25.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.471][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.473][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:25.474][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:25.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.476][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.477][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:25.479][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:25.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.481][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.482][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:25.483][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:25.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.486][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.487][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:25.488][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:25.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.490][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.491][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:25.493][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:25.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.495][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.496][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:25.497][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:25.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.500][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.501][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.502][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.504][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.505][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:25.507][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:25.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.509][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.510][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:25.511][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:25.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.513][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.515][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:25.516][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:25.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.518][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.519][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:25.521][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:25.522][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:25.523][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:25.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.525][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.526][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:25.528][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:25.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.530][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.531][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:25.532][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:25.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.535][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.536][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:25.537][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:25.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.539][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.540][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:25.542][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:25.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.544][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.545][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:25.546][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:25.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.549][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.550][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:25.551][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:25.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.553][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.554][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.556][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.558][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.559][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:25.560][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:25.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.562][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.564][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:25.565][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:25.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.567][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.568][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:25.570][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:25.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.572][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.573][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:25.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:25.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:25.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:25.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:25.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:25.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:25.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.589][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:25.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:25.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.594][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:25.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:25.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.598][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:25.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:25.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:25.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:25.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:25.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:25.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:25.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:25.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.617][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:25.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:25.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.622][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:25.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:25.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.627][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:25.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:25.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:25.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:25.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:25.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:25.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.641][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:25.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:25.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.646][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:25.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:25.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.651][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:25.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:25.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.656][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:25.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:25.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:25.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:25.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:25.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:25.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:25.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:25.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.694][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:25.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:25.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.699][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:25.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:25.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.704][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:25.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:25.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.708][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:25.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:25.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:25.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:25.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.718][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:25.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:25.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.723][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:25.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:25.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.728][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:25.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:25.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.732][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:25.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:25.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.742][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-08-09 16:06:25.743][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:06:25.744][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:06:25.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:25.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:25.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:25.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:25.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:25.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:25.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:25.762][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:25.765][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:25.767][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-08-09 16:06:25.768][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:25.771][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-08-09 16:06:25.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:25.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:25.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:25.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:25.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:25.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:25.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:25.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:25.801][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:25.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:25.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:25.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:25.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:25.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:25.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:25.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:25.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:25.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:25.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:25.838][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:25.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:25.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:25.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:25.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:25.856][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:06:25.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:25.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:25.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:25.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:25.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:25.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:25.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:25.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:25.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:25.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:25.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:25.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.881][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:25.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:25.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.886][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:25.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:25.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:25.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:25.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:25.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:25.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.900][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:25.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:25.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.904][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:25.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:25.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:25.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:25.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:25.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:25.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:25.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:25.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:25.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:25.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.928][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:25.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:25.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.933][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:25.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:25.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:25.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:25.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:25.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:25.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:25.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.956][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:25.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:25.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.961][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:25.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:25.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.966][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:25.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:25.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.970][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:25.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:25.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.975][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:25.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:25.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.980][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:25.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:25.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.984][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:25.985][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:25.987][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:25.988][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:25.989][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:25.990][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:25.991][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:25.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.994][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.995][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:25.996][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:25.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:25.998][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:25.999][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.001][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.003][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.004][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:26.005][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:26.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.007][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.009][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:26.010][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:26.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.012][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.013][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.014][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.017][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.018][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:26.019][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:26.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.021][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.022][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.024][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.026][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.027][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.028][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.031][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.032][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.033][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.035][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.036][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:26.038][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:26.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.040][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.041][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:26.042][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:26.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.045][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.046][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:26.047][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:26.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.049][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.051][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:26.052][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:26.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.054][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.055][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.062][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.064][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.066][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:26.067][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:26.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.069][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.070][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:26.071][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:26.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.074][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.075][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.076][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.078][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.080][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:26.081][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:26.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.083][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.084][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.085][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.088][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.089][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.090][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.092][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.093][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.095][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.097][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.098][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:26.099][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:26.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.102][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.103][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:26.104][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:26.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.106][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.107][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:26.109][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:26.110][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:26.111][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:26.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.113][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.114][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:26.116][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:26.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.118][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.119][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.120][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.122][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.124][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:26.125][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:26.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.127][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.128][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:26.129][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:26.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.132][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.133][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.134][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.136][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.137][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:26.139][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:26.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.141][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.142][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.143][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.146][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.147][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.148][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.150][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.151][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.153][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.155][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.156][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:26.157][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:26.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.159][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.160][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:26.162][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:26.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.164][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.165][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:26.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:26.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:26.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:26.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:26.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:26.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:26.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.181][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:26.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:26.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.186][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:26.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:26.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.190][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:26.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:26.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.210][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:26.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:26.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.214][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:26.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:26.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.219][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:26.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:26.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:26.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:26.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:26.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:26.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:26.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:26.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.252][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:26.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:26.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.257][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:26.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:26.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.263][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:26.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:26.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.298][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.303][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.307][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.312][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:26.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:26.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.317][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:26.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:26.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.322][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:26.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:26.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.327][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:26.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:26.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.331][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:26.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:26.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.336][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:26.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:26.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.346][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-08-09 16:06:26.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:26.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:26.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:26.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:26.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:26.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:26.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:26.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:26.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:26.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:26.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:26.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.372][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:26.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:26.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.376][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:26.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:26.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.391][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:26.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:26.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.395][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:26.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:26.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:26.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:26.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:26.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:26.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.415][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.419][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:26.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:26.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.424][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:26.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:26.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.448][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.453][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.463][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:26.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:26.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.468][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:26.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:26.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.472][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:26.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:26.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.477][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:26.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:26.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.482][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:26.483][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:26.484][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:26.485][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:26.486][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:26.487][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:26.489][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:26.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.491][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.492][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:26.493][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:26.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.495][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.497][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.498][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.500][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.501][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:26.502][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:26.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.505][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.506][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:26.507][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:26.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.509][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.511][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.512][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.514][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.515][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:26.516][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:26.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.519][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.520][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.521][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.523][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.524][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.526][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.528][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.529][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.530][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.532][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.534][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:26.535][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:26.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.537][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.538][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:26.539][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:26.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.542][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.543][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:26.544][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:26.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.546][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.548][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:26.549][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:26.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.551][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.552][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.553][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.556][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.557][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:26.558][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:26.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.560][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.561][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:26.563][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:26.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.565][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.566][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.567][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.570][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.571][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:26.572][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:26.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.574][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.575][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.577][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.579][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.580][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.581][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.583][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.585][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.586][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.588][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.589][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:26.590][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:26.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.593][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.594][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:26.595][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:26.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.597][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.599][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:26.600][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:26.601][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:26.602][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:26.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.604][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.606][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:26.607][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:26.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.609][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.610][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.611][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.614][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.615][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:26.616][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:26.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.618][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.619][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:26.621][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:26.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.623][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.624][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.625][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.627][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.629][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.630][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.632][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.633][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.635][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.637][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.638][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.639][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.641][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.643][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:26.644][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:26.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.646][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.647][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:26.648][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:26.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.651][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.652][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:26.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:26.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:26.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:26.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:26.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:26.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:26.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.668][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:26.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:26.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.673][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:26.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:26.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.677][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:26.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:26.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.697][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:26.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:26.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.701][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:26.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:26.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.706][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:26.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:26.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:26.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:26.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.716][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:26.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:26.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.720][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:26.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:26.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.725][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.768][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.773][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.778][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.783][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:26.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:26.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.787][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:26.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:26.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.792][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:26.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:26.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.797][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:26.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:26.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.802][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:26.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:26.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.806][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:26.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:26.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.816][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2025-08-09 16:06:26.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:26.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:26.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:26.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:26.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:26.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:26.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:26.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:26.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:26.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:26.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:26.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.841][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:26.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:26.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.850][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:26.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:26.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.865][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:26.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:26.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.870][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:26.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:26.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.874][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:26.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:26.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:26.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:26.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.893][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:26.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:26.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.898][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:26.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:26.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.921][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.926][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.930][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:26.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:26.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.935][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:26.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:26.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.940][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:26.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:26.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.944][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:26.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:26.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.949][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:26.950][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:26.951][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:26.952][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:26.953][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:26.955][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:26.956][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:26.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.958][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.959][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:26.960][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:26.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.963][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.964][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.965][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:26.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.967][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.968][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:26.970][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:26.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.972][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.973][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:26.974][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:26.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.977][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.978][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.979][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:26.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.981][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.982][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:26.984][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:26.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.986][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.987][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.988][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:26.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.991][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.992][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.993][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:26.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:26.995][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:26.996][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.998][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:26.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.000][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.001][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:27.002][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:27.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.005][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.006][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:27.007][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:27.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.009][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.010][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:27.012][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:27.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.014][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.015][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:27.016][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:27.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.018][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.020][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:27.021][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:27.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.023][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.024][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:27.025][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:27.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.028][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.029][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:27.030][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:27.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.032][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.033][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:27.035][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:27.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.037][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.038][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:27.039][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:27.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.041][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.043][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:27.044][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:27.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.046][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.047][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.049][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.051][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.052][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:27.053][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:27.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.056][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.057][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:27.058][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:27.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.060][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.062][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:27.063][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:27.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.065][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.066][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:27.067][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:27.069][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:27.070][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:27.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.072][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.073][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:27.074][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:27.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.077][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.078][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:27.079][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:27.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.081][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.082][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:27.084][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:27.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.086][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.087][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:27.088][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:27.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.091][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.092][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:27.093][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:27.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.095][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.096][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:27.098][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:27.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.100][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.101][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.102][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.104][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.106][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:27.107][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:27.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.109][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.110][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:27.111][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:27.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.114][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.115][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:27.116][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:27.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.118][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.120][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:27.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:27.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:27.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:27.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:27.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:27.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:27.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.135][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:27.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:27.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.140][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:27.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:27.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.145][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:27.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:27.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:27.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:27.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:27.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:27.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:27.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:27.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.164][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:27.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:27.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.169][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:27.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:27.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.174][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:27.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:27.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:27.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:27.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:27.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:27.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:27.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:27.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:27.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:27.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:27.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:27.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.202][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:27.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:27.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:27.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:27.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:27.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:27.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:27.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:27.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.236][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:27.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:27.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.247][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:27.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:27.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.251][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:27.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:27.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.256][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:27.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:27.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.261][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:27.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:27.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.266][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:27.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:27.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.271][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:27.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:27.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.276][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:27.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:27.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.281][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:27.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:27.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.290][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2025-08-09 16:06:27.292][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:06:27.293][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:06:27.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:27.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:27.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:27.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:27.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:27.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:27.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:27.311][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:27.314][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:27.316][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-08-09 16:06:27.318][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:27.320][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-08-09 16:06:27.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:27.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:27.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:27.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:27.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:27.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:27.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:27.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:27.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:27.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:27.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:27.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:27.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:27.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:27.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:27.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:27.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:27.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:27.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:27.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:27.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:27.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:27.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:27.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:27.407][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:06:27.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:27.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:27.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:27.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:27.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:27.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:27.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:27.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:27.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:27.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:27.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:27.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.432][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:27.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:27.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.437][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:27.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:27.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:27.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:27.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:27.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:27.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.451][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:27.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:27.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.456][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:27.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:27.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:27.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:27.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:27.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:27.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.471][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:27.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:27.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:27.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:27.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.480][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:27.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:27.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.485][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:27.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:27.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:27.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:27.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:27.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:27.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.508][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:27.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:27.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.513][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:27.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:27.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.518][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:27.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:27.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.523][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:27.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:27.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.527][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:27.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:27.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.532][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:27.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:27.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.537][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:27.538][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:27.539][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:27.540][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:27.542][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:27.543][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:27.544][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:27.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.546][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.547][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:27.549][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:27.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.551][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.552][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:27.553][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:27.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.556][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.557][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:27.558][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:27.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.560][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.562][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:27.563][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:27.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.565][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.566][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:27.567][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:27.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.570][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.571][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:27.572][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:27.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.574][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.576][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:27.577][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:27.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.579][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.580][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.582][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.584][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.585][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:27.586][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:27.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.588][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.590][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:27.591][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:27.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.593][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.594][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:27.596][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:27.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.598][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.599][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:27.600][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:27.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.603][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.604][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:27.605][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:27.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.607][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.608][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:27.610][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:27.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.612][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.613][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:27.614][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:27.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.617][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.618][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:27.619][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:27.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.621][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.622][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:27.624][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:27.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.626][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.627][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:27.628][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:27.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.631][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.632][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:27.633][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:27.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.635][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.637][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.638][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.640][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.647][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:27.648][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:27.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.651][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.652][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:27.653][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:27.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.655][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.656][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:27.658][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:27.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.660][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.661][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:27.662][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:27.663][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:27.665][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:27.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.667][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.668][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:27.669][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:27.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.672][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.673][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:27.674][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:27.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.676][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.677][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:27.679][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:27.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.681][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.682][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:27.683][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:27.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.686][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.687][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:27.688][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:27.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.690][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.691][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:27.693][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:27.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.695][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.696][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:27.697][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:27.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.699][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.701][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.702][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.704][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.705][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:27.706][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:27.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.709][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.710][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:27.711][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:27.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.713][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.714][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:27.716][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:27.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.718][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.719][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:27.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:27.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:27.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:27.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:27.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:27.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:27.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.735][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:27.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:27.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.740][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:27.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:27.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.744][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:27.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:27.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:27.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:27.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:27.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:27.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:27.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:27.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.763][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:27.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:27.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.768][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:27.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:27.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.773][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:27.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:27.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:27.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:27.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:27.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:27.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:27.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:27.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.792][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:27.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:27.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:27.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:27.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:27.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:27.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.806][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:27.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:27.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.811][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:27.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:27.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.816][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:27.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:27.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:27.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:27.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:27.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:27.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:27.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:27.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.840][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.850][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:27.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:27.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.855][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:27.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:27.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.859][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:27.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:27.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.864][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:27.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:27.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.869][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:27.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:27.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.874][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:27.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:27.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.879][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:27.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:27.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.884][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:27.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:27.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.888][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:27.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:27.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.898][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2025-08-09 16:06:27.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:27.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:27.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:27.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:27.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:27.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:27.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:27.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:27.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:27.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:27.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:27.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.924][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:27.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:27.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.928][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:27.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:27.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:27.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:27.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:27.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:27.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.943][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:27.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:27.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.948][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:27.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:27.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:27.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:27.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:27.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:27.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:27.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:27.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:27.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:27.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.972][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:27.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:27.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.976][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:27.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:27.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:27.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:27.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:27.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:27.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:27.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:27.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:27.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.000][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.005][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.010][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:28.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:28.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.015][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:28.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:28.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.019][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:28.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:28.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.024][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:28.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:28.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.029][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:28.030][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:28.031][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:28.032][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:28.034][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:28.035][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:28.042][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:28.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.044][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.045][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:28.047][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:28.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.049][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.050][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:28.051][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:28.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.054][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.055][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:28.056][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:28.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.058][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.059][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:28.061][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:28.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.063][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.064][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:28.065][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:28.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.068][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.069][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:28.070][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:28.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.072][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.073][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:28.075][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:28.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.077][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.078][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.079][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.082][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.083][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.084][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.086][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.088][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:28.089][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:28.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.091][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.092][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:28.093][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:28.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.096][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.097][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:28.098][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:28.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.100][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.101][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:28.103][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:28.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.105][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.106][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:28.107][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:28.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.110][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.111][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:28.112][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:28.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.114][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.115][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:28.117][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:28.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.119][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.120][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:28.121][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:28.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.123][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.125][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:28.126][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:28.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.128][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.129][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:28.130][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:28.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.133][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.134][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.135][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.137][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.139][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.140][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.142][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.143][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:28.144][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:28.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.147][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.148][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:28.149][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:28.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.151][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.152][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:28.154][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:28.155][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:28.156][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:28.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.158][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.159][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:28.161][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:28.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.163][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.164][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:28.165][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:28.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.167][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.169][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:28.170][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:28.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.172][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.173][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:28.174][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:28.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.177][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.178][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:28.179][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:28.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.181][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.183][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:28.184][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:28.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.186][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.187][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.188][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.191][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.192][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.193][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.195][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.196][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:28.198][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:28.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.200][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.201][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:28.202][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:28.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.204][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.206][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:28.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:28.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:28.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:28.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:28.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:28.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:28.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.221][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:28.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:28.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.226][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:28.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:28.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.231][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:28.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:28.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:28.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:28.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:28.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:28.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:28.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:28.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.250][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:28.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:28.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.255][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:28.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:28.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.260][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:28.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:28.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:28.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:28.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:28.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:28.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.276][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:28.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:28.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.280][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:28.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:28.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.285][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:28.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:28.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:28.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:28.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:28.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:28.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:28.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:28.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:28.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:28.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.323][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.328][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.333][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.338][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:28.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:28.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.342][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:28.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:28.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.347][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:28.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:28.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.352][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:28.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:28.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.357][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:28.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:28.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.361][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:28.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:28.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.371][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2025-08-09 16:06:28.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:28.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:28.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:28.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:28.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:28.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:28.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:28.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:28.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:28.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:28.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:28.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.396][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:28.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:28.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.400][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:28.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:28.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:28.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:28.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:28.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:28.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.414][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:28.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:28.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.419][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:28.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:28.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.424][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:28.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:28.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.429][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:28.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:28.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:28.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:28.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:28.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:28.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.449][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:28.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:28.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.453][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:28.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:28.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:28.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:28.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:28.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:28.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.477][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.481][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.486][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:28.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:28.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.491][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:28.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:28.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.495][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:28.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:28.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.500][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:28.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:28.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.505][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:28.506][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:28.507][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:28.508][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:28.509][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:28.511][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:28.512][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:28.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.514][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.515][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:28.516][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:28.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.519][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.520][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:28.521][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:28.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.523][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.524][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:28.526][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:28.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.528][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.529][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:28.530][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:28.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.532][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.534][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:28.535][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:28.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.537][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.538][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:28.539][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:28.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.542][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.543][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:28.544][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:28.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.546][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.548][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.549][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.551][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.552][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.553][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.556][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.557][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:28.558][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:28.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.560][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.561][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:28.563][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:28.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.565][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.566][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:28.567][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:28.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.570][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.571][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:28.572][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:28.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.574][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.575][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:28.577][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:28.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.579][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.580][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:28.581][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:28.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.584][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.585][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:28.586][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:28.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.588][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.589][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:28.591][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:28.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.593][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.594][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:28.595][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:28.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.598][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.599][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:28.600][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:28.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.602][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.603][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.605][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.607][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.608][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.609][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.612][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.613][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:28.614][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:28.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.616][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.617][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:28.619][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:28.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.621][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.622][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:28.623][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:28.624][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:28.626][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:28.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.628][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.629][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:28.630][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:28.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.633][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.634][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:28.635][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:28.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.637][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.639][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:28.640][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:28.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.642][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.643][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:28.645][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:28.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.647][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.648][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:28.649][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:28.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.652][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.653][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:28.654][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:28.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.656][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.657][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.659][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.661][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.662][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.663][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.666][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.667][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:28.668][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:28.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.670][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.671][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:28.673][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:28.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.675][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.676][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:28.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:28.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:28.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:28.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:28.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:28.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:28.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.692][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:28.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:28.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.697][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:28.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:28.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.701][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:28.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:28.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:28.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:28.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:28.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:28.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:28.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:28.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.721][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:28.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:28.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.725][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:28.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:28.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.730][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:28.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:28.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:28.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:28.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.740][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:28.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:28.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:28.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:28.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:28.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:28.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.754][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:28.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:28.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.759][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:28.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:28.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:28.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:28.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:28.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:28.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:28.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:28.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.793][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.797][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.802][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:28.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.807][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:28.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:28.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.812][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:28.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:28.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.816][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:28.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:28.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.821][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:28.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:28.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.832][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:28.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:28.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.837][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:28.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:28.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.846][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2025-08-09 16:06:28.848][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:06:28.849][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:06:28.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:28.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:28.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:28.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:28.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:28.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:28.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:28.872][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:28.876][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:28.877][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-08-09 16:06:28.879][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:28.881][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-08-09 16:06:28.885][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:28.888][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:28.890][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-08-09 16:06:28.891][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:28.894][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-08-09 16:06:28.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:28.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:28.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:28.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:28.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:28.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:28.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:28.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:28.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:28.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:28.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:28.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:28.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:28.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:28.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:28.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:28.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:28.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:28.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:28.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:28.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:28.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:28.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:28.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:28.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:28.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:28.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:28.981][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:06:28.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:28.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:28.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:28.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:28.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:28.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:28.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:28.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:28.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:28.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:29.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:29.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.006][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:29.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:29.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.011][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:29.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:29.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.025][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:29.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:29.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.030][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:29.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:29.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:29.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:29.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.040][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:29.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:29.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.054][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.059][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.083][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.088][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.092][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:29.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:29.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.097][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:29.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:29.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.102][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:29.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:29.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.107][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:29.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:29.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.111][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:29.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:29.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.116][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:29.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:29.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.121][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:29.122][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:29.123][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:29.124][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:29.125][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:29.127][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:29.128][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:29.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.130][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.131][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:29.133][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:29.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.135][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.136][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.137][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.140][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.141][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:29.142][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:29.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.144][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.145][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:29.147][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:29.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.149][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.150][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.151][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.154][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.155][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.156][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.158][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.160][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.161][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.163][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.164][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.166][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.168][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.169][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.170][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.173][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.174][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:29.175][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:29.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.177][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.178][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:29.180][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:29.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.182][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.183][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:29.184][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:29.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.187][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.188][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:29.189][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:29.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.192][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.193][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:29.194][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:29.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.196][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.197][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.199][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.201][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.202][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:29.203][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:29.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.206][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.207][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:29.208][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:29.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.210][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.212][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.213][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.215][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.216][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.218][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.220][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.221][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.222][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.225][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.226][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.233][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.236][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.237][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.238][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.240][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.242][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:29.243][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:29.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.245][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.246][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:29.247][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:29.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.250][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.251][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:29.252][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:29.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.254][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.255][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:29.257][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:29.258][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:29.259][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:29.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.261][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.262][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:29.264][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:29.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.266][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.268][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.269][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.271][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.272][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:29.274][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:29.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.276][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.277][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:29.278][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:29.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.280][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.282][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.283][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.285][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.286][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.287][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.290][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.291][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.292][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.294][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.295][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.297][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.299][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.300][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.301][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.304][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.305][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:29.306][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:29.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.308][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.309][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:29.311][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:29.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.313][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.314][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:29.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:29.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:29.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:29.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:29.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:29.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:29.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.330][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:29.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:29.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.334][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:29.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:29.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.339][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:29.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:29.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.358][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:29.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:29.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.363][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:29.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:29.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.368][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:29.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:29.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.373][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:29.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:29.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:29.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:29.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:29.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:29.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.387][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.401][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.406][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.411][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.445][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.450][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.454][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.459][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:29.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:29.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.464][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:29.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:29.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.469][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:29.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:29.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.474][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:29.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:29.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.479][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:29.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:29.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.483][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:29.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:29.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.493][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-08-09 16:06:29.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:29.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:29.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:29.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:29.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:29.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:29.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:29.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:29.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:29.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:29.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:29.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.519][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:29.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:29.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.523][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:29.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:29.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.538][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:29.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:29.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.542][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:29.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:29.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.547][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:29.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:29.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.552][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:29.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:29.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.557][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.561][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.566][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.571][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.595][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.599][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.604][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:29.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:29.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.609][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:29.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:29.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.614][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:29.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:29.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.618][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:29.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:29.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.629][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:29.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:29.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.634][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:29.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:29.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.639][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:29.640][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:29.641][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:29.642][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:29.643][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:29.644][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:29.646][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:29.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.648][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.649][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:29.650][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:29.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.653][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.654][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.655][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.657][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.658][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:29.660][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:29.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.662][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.663][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:29.664][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:29.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.666][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.668][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.669][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.671][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.672][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.673][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.676][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.677][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.678][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.680][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.681][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.683][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.685][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.686][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.687][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.690][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.691][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:29.692][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:29.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.694][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.695][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:29.697][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:29.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.699][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.700][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:29.701][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:29.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.703][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.705][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:29.706][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:29.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.708][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.709][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:29.710][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:29.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.713][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.714][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.715][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.717][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.718][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:29.720][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:29.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.722][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.723][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:29.724][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:29.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.727][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.728][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.729][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.731][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.732][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.734][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.736][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.737][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.738][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.740][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.742][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.743][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.745][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.746][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.747][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.750][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.751][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:29.752][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:29.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.754][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.755][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:29.757][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:29.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.759][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.760][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:29.761][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:29.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.764][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.765][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:29.766][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:29.767][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:29.768][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:29.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.771][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.772][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:29.773][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:29.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.775][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.776][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.778][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.780][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.781][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:29.782][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:29.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.785][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.786][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:29.787][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:29.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.789][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.790][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.792][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.794][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.795][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.796][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.798][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.800][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.801][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.803][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.804][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.806][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.808][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.809][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.810][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.812][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.814][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:29.815][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:29.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.817][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.818][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:29.819][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:29.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.822][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.823][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:29.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:29.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:29.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:29.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:29.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:29.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:29.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.839][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:29.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:29.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.844][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:29.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:29.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.848][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:29.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:29.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:29.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.868][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:29.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:29.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.872][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:29.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:29.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.877][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:29.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:29.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:29.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:29.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:29.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:29.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.891][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:29.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:29.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:29.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.911][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.915][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.920][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:29.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:29.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:29.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.954][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.959][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.963][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:29.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.968][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:29.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:29.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.973][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:29.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:29.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.978][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:29.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:29.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.983][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:29.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:29.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.987][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:29.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:29.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:29.992][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:29.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:29.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:29.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.002][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-08-09 16:06:30.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:30.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:30.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:30.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:30.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:30.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:30.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:30.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:30.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:30.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:30.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:30.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.032][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:30.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:30.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.037][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:30.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:30.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.051][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:30.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:30.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.055][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:30.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:30.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:30.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:30.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.065][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:30.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:30.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:30.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:30.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:30.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:30.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.079][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:30.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:30.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.084][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:30.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:30.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:30.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:30.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:30.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:30.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.107][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:30.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:30.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.112][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:30.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:30.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.116][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:30.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:30.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.121][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:30.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:30.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.126][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:30.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:30.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.130][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:30.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:30.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.135][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:30.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:30.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.140][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:30.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:30.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.144][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:30.146][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:30.147][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:30.148][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:30.149][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:30.150][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:30.151][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:30.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.154][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.155][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:30.156][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:30.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.158][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.159][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.161][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.163][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.164][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:30.165][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:30.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.168][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.169][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:30.170][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:30.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.172][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.173][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:30.175][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:30.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.177][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.178][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:30.179][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:30.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.181][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.183][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:30.184][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:30.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.186][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.187][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.188][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.191][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.192][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:30.193][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:30.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.195][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.196][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:30.198][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:30.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.200][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.201][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:30.202][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:30.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.205][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.206][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:30.207][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:30.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.209][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.210][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:30.212][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:30.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.214][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.215][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:30.216][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:30.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.219][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.220][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.221][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.223][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.225][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:30.226][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:30.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.228][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.229][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:30.230][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:30.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.233][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.234][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:30.235][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:30.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.237][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.239][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:30.240][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:30.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.242][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.243][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:30.244][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:30.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.247][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.248][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.249][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.251][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.253][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:30.254][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:30.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.256][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.257][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:30.258][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:30.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.261][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.262][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:30.263][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:30.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.265][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.267][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:30.268][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:30.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.271][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.272][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:30.274][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:30.275][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:30.276][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:30.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.278][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.279][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:30.281][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:30.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.283][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.284][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.285][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.287][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.289][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:30.290][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:30.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.292][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.293][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:30.295][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:30.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.297][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.298][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:30.299][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:30.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.301][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.303][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:30.304][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:30.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.306][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.307][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.309][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.311][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.312][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:30.313][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:30.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.316][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.317][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:30.318][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:30.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.320][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.321][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:30.323][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:30.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.325][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.326][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:30.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:30.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:30.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:30.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:30.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:30.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:30.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.342][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:30.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:30.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.346][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:30.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:30.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.351][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:30.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:30.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.370][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:30.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:30.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.375][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:30.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:30.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.380][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:30.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:30.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:30.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:30.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:30.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:30.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.394][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:30.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:30.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:30.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:30.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:30.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:30.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.415][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:30.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:30.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:30.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:30.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:30.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:30.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:30.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:30.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.448][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:30.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:30.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.453][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:30.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:30.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.458][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:30.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:30.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.463][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:30.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:30.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.467][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:30.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:30.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.472][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:30.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:30.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.477][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:30.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:30.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.482][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:30.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:30.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.486][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:30.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:30.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.496][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-08-09 16:06:30.497][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:06:30.498][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:06:30.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:30.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:30.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:30.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:30.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:30.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:30.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:30.516][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:30.520][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:30.521][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-08-09 16:06:30.523][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:30.525][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-08-09 16:06:30.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:30.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:30.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:30.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:30.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:30.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:30.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:30.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:30.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:30.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:30.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:30.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:30.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:30.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:30.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:30.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:30.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:30.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:30.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:30.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:30.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:30.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:30.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:30.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:30.612][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:06:30.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:30.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:30.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:30.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:30.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:30.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:30.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:30.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:30.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:30.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:30.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:30.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.638][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:30.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:30.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.642][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:30.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:30.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.657][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:30.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:30.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.662][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:30.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:30.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:30.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:30.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:30.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:30.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.676][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:30.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:30.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:30.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:30.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.685][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:30.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:30.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.690][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:30.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:30.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:30.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:30.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:30.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:30.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.714][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:30.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:30.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.719][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:30.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:30.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.724][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:30.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:30.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.728][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:30.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:30.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.733][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:30.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:30.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.738][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:30.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:30.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.743][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:30.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:30.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.747][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:30.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:30.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.752][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:30.753][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:30.755][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:30.756][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:30.757][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:30.758][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:30.759][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:30.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.762][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.763][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:30.764][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:30.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.766][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.767][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.769][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.771][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.772][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:30.773][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:30.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.776][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.777][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:30.778][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:30.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.780][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.782][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:30.783][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:30.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.785][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.786][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:30.788][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:30.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.790][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.791][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:30.792][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:30.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.795][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.796][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.797][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.799][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.801][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:30.802][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:30.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.804][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.811][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:30.813][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:30.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.815][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.816][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:30.817][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:30.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.820][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.821][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:30.822][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:30.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.824][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.825][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:30.827][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:30.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.829][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.830][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:30.831][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:30.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.834][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.835][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.836][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.838][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.839][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:30.841][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:30.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.843][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.844][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:30.845][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:30.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.848][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.849][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:30.850][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:30.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.852][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.854][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:30.855][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:30.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.857][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.858][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:30.859][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:30.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.862][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.863][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.864][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.867][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.868][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:30.869][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:30.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.871][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.872][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:30.874][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:30.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.876][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.877][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:30.878][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:30.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.881][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.882][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:30.883][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:30.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.885][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.886][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:30.888][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:30.889][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:30.890][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:30.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.892][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.894][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:30.895][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:30.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.897][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.898][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.899][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.902][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.903][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:30.904][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:30.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.906][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.907][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:30.909][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:30.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.911][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.912][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:30.913][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:30.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.916][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.917][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:30.918][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:30.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.920][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.921][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:30.923][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:30.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.925][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.926][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.927][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:30.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.930][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.931][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:30.932][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:30.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.934][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.935][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:30.937][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:30.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.939][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.940][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:30.941][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:30.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.943][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.945][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:30.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:30.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:30.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:30.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:30.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:30.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:30.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.960][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:30.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:30.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.965][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:30.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:30.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.970][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:30.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:30.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:30.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.989][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:30.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:30.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.994][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:30.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:30.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:30.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:30.999][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:31.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:31.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:31.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:31.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:31.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:31.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:31.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:31.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.023][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.032][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:31.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:31.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.037][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:31.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:31.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.042][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:31.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:31.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.076][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.081][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.086][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.090][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:31.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:31.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.095][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:31.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:31.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.100][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:31.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:31.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.105][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:31.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:31.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.110][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:31.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:31.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.115][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:31.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:31.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.125][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-08-09 16:06:31.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:31.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:31.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:31.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:31.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:31.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:31.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:31.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:31.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:31.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:31.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:31.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.150][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:31.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:31.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.155][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:31.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:31.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.169][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:31.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:31.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.174][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:31.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:31.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:31.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:31.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:31.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:31.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.204][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:31.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:31.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.209][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:31.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:31.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.232][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.237][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.242][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:31.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:31.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:31.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:31.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.251][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:31.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:31.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.256][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:31.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:31.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.261][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:31.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:31.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.266][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:31.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:31.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.271][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:31.272][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:31.274][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:31.275][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:31.277][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:31.278][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:31.279][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:31.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.281][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.283][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:31.284][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:31.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.286][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.287][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.289][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.291][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.292][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:31.293][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:31.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.295][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.297][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:31.298][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:31.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.300][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.301][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.303][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.305][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.306][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:31.307][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:31.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.309][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.311][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.312][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.314][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.315][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.316][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.319][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.320][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.321][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.323][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.325][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:31.326][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:31.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.328][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.329][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:31.330][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:31.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.333][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.334][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:31.335][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:31.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.337][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.338][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:31.340][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:31.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.342][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.343][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:31.344][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:31.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.347][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.348][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.349][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.351][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.353][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:31.354][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:31.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.356][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.357][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:31.359][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:31.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.361][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.362][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.363][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.365][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.367][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:31.368][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:31.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.370][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.371][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.372][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.375][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.376][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.377][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.379][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.381][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.382][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.384][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.385][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:31.386][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:31.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.389][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.390][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:31.391][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:31.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.393][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.395][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:31.396][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:31.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.398][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.399][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:31.400][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:31.402][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:31.403][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:31.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.405][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.406][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:31.408][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:31.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.410][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.411][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.412][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.415][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.416][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:31.417][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:31.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.419][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.420][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:31.422][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:31.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.424][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.425][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.426][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.429][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.430][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.431][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.433][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.434][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.436][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.438][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.439][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.440][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.443][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.444][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:31.445][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:31.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.447][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.448][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:31.450][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:31.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.452][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.453][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:31.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:31.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:31.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:31.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:31.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:31.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:31.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.469][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:31.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:31.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.473][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:31.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:31.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.478][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:31.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:31.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.497][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:31.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:31.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.502][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:31.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:31.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.507][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:31.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:31.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:31.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:31.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:31.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:31.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:31.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:31.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.570][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.574][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.579][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.584][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:31.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:31.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.589][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:31.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:31.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.602][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:31.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:31.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.608][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:31.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:31.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.612][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:31.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:31.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.617][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:31.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:31.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.627][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2025-08-09 16:06:31.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:31.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:31.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:31.637][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:31.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:31.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:31.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:31.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:31.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:31.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:31.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:31.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.651][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:31.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:31.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.656][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:31.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:31.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.670][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:31.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:31.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.675][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:31.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:31.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:31.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:31.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.684][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:31.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:31.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.699][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:31.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:31.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.703][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:31.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:31.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.727][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.731][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.736][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:31.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:31.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.741][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:31.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:31.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.746][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:31.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:31.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.750][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:31.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:31.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.755][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:31.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:31.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.760][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:31.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:31.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.764][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:31.766][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:31.767][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:31.768][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:31.769][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:31.770][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:31.771][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:31.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.774][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.775][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:31.776][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:31.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.778][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.779][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.781][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.783][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.784][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:31.785][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:31.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.788][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.789][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:31.790][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:31.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.792][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.793][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.795][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.797][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.798][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:31.799][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:31.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.801][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.803][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.804][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.806][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.807][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.809][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.811][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.812][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.813][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.816][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.817][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:31.818][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:31.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.820][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.821][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:31.823][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:31.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.825][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.826][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:31.827][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:31.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.830][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.831][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:31.832][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:31.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.834][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.835][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:31.837][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:31.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.839][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.840][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.841][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.844][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.845][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:31.846][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:31.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.848][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.849][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:31.851][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:31.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.853][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.854][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.855][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.858][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.859][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:31.860][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:31.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.862][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.864][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.865][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.867][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.868][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.869][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.872][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.873][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.874][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.876][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.878][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:31.879][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:31.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.881][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.882][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:31.883][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:31.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.886][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.887][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:31.888][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:31.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.890][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.892][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:31.893][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:31.894][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:31.895][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:31.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.897][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.899][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:31.900][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:31.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.902][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.903][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.904][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.907][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.908][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:31.909][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:31.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.911][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.913][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:31.914][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:31.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.916][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.917][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.918][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:31.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.921][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.922][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.923][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:31.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.925][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.926][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.928][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:31.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.930][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.931][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.932][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:31.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.935][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.936][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:31.937][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:31.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.939][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.940][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:31.942][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:31.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.944][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.945][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:31.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:31.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:31.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:31.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:31.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:31.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:31.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.961][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:31.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:31.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.966][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:31.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:31.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.970][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:31.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:31.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:31.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:31.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:31.996][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:31.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:31.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.001][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:32.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:32.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.006][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:32.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:32.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:32.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:32.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:32.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:32.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:32.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:32.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.025][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:32.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:32.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:32.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:32.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:32.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:32.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:32.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:32.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:32.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:32.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:32.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:32.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.068][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:32.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:32.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.073][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:32.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:32.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.078][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:32.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:32.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.083][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:32.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:32.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.087][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:32.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:32.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.092][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:32.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:32.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.097][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:32.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:32.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.102][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:32.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:32.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.106][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:32.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:32.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.116][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2025-08-09 16:06:32.117][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:06:32.118][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:06:32.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:32.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:32.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:32.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:32.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:32.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:32.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:06:32.137][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-09 16:06:32.140][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-09 16:06:32.142][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-08-09 16:06:32.143][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-09 16:06:32.146][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-08-09 16:06:32.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:32.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:32.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:32.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:32.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:32.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:32.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:32.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:32.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:32.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:32.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:32.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:32.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:32.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:32.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:32.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:32.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:32.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:32.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:32.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:32.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:32.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:32.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:32.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:06:32.234][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:06:32.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:32.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:32.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:32.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:32.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:32.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:32.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:32.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:32.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:32.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:32.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:32.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.259][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:32.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:32.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.264][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:32.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:32.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:32.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:32.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:32.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:32.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.281][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:32.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:32.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.287][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:32.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:32.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:32.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:32.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:32.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:32.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.308][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:32.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:32.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:32.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:32.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.320][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:32.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:32.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.325][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:32.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:32.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:32.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:32.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:32.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:32.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.349][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:32.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:32.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.354][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:32.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:32.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.358][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:32.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:32.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.363][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:32.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:32.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.368][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:32.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:32.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.373][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:32.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:32.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.377][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:32.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:32.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.382][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:32.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:32.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.387][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:32.388][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:32.389][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:32.390][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:32.392][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:32.393][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:32.394][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:32.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.396][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.398][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:32.399][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:32.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.401][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.402][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:32.404][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:32.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.412][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.414][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:32.415][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:32.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.417][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.419][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:32.420][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:32.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.422][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.423][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:32.425][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:32.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.427][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.428][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:32.429][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:32.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.432][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.433][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:32.434][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:32.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.436][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.437][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.439][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.441][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.442][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:32.443][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:32.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.446][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.447][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:32.448][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:32.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.450][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.452][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:32.453][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:32.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.455][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.456][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:32.457][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:32.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.460][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.461][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:32.462][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:32.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.464][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.466][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:32.467][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:32.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.469][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.470][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:32.471][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:32.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.474][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.475][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:32.476][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:32.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.478][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.479][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:32.481][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:32.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.483][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.484][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:32.485][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:32.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.488][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.489][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:32.490][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:32.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.492][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.493][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:32.495][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:32.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.497][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.498][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.499][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.501][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.503][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:32.504][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:32.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.506][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.507][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:32.509][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:32.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.511][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.512][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:32.513][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:32.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.515][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.517][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:32.518][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:32.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.520][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.521][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:32.522][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:32.524][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:32.525][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:32.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.527][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.528][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:32.529][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:32.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.532][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.533][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:32.534][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:32.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.536][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.538][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:32.539][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:32.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.541][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.542][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:32.543][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:32.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.546][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.547][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:32.548][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:32.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.550][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.551][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:32.553][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:32.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.555][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.556][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:32.557][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:32.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.560][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.561][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.562][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.564][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.566][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:32.567][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:32.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.569][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.570][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:32.571][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:32.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.574][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.575][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:32.576][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:32.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.578][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.580][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:32.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:32.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:32.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:32.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:32.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:32.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:32.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.595][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:32.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:32.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.600][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:32.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:32.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.605][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:32.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:32.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:32.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:32.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:32.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:32.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:32.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:32.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.625][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:32.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:32.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.629][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:32.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:32.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.634][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:32.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:32.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:32.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:32.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:32.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:32.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.649][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:32.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:32.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:32.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:32.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:32.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:32.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:32.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:32.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.668][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:32.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:32.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.673][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:32.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:32.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.677][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:32.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:32.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:32.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:32.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:32.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:32.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:32.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:32.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.711][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:32.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:32.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.716][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:32.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:32.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.720][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:32.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:32.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.725][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:32.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:32.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.730][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:32.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:32.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.735][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:32.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:32.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.740][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:32.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:32.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.744][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:32.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:32.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.749][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:32.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:32.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.759][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2025-08-09 16:06:32.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:32.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:32.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:32.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:32.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:32.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:32.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:32.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:32.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:32.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:32.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:32.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.784][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:32.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:32.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.789][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:32.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:32.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:32.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:32.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:32.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:32.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.810][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:32.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:32.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.815][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:32.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:32.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:32.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:32.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:32.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:32.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:32.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:32.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:32.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:32.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.838][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:32.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:32.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.843][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:32.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:32.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:32.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:32.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:32.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:32.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.867][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:32.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:32.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.871][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:32.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:32.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.876][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:32.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:32.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.881][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:32.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:32.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.885][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:32.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:32.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.890][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:32.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:32.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.895][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:32.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:32.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.899][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:32.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:32.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.904][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:32.905][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:32.906][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:32.908][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:32.909][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:32.910][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:32.911][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:32.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.913][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.915][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:32.916][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:32.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.918][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.919][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:32.921][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:32.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.923][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.924][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:32.925][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:32.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.927][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.929][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:32.930][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:32.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.932][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.933][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:32.935][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:32.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.937][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.938][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:32.939][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:32.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.941][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.943][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:32.944][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:32.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.946][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.947][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.948][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:32.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.951][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.952][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:32.953][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:32.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.955][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.956][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:32.958][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:32.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.960][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.961][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:32.962][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:32.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.965][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.966][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:32.967][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:32.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.969][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.970][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:32.972][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:32.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.974][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.975][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:32.976][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:32.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.979][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.980][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:32.981][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:32.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.983][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.984][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:32.986][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:32.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.988][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.989][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:32.990][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:32.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.993][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.994][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:32.995][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:32.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:32.997][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:32.998][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:33.000][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:33.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.002][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.003][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:33.004][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:33.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.007][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.008][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:33.009][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:33.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.011][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.013][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:33.014][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:33.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.016][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.017][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:33.019][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:33.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.021][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.022][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:33.023][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:33.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.025][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.027][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:33.028][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:33.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.030][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.031][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:33.032][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:33.034][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:33.035][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:33.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.037][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.038][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:33.039][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:33.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.042][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.043][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:33.044][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:33.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.046][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.048][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:33.049][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:33.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.051][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.052][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:33.053][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:33.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.056][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.057][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:33.058][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:33.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.061][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.062][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:33.063][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:33.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.065][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.067][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:33.068][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:33.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.070][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.071][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:33.073][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:33.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.075][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.076][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:33.077][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:33.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.079][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.081][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:33.082][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:33.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.084][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.086][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:33.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:33.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:33.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:33.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:33.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:33.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:33.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.101][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:33.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:33.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.106][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:33.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:33.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.111][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:33.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:33.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:33.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:33.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:33.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:33.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:33.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:33.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.130][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:33.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:33.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.135][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:33.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:33.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.140][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:33.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:33.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:33.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:33.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:33.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:33.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:33.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:33.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.159][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:33.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:33.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:33.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:33.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.169][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:33.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:33.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:33.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:33.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.178][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:33.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:33.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:33.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:33.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:33.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:33.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:33.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:33.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:33.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:33.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.209][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:33.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:33.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.214][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:33.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:33.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.219][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:33.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:33.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.224][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:33.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:33.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.228][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:33.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:33.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.233][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:33.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:33.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.238][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:33.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:33.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.243][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:33.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:33.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.247][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:33.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:33.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.257][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2025-08-09 16:06:33.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:06:33.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:33.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:33.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:33.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:33.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:33.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:06:33.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:33.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:33.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:33.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:33.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.290][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:33.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:33.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.295][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:33.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:33.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:33.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:33.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:33.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:33.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.309][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:33.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:33.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.314][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:33.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:33.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.319][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:33.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:33.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.323][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:33.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:33.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.328][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:33.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:33.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.333][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:33.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:33.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.338][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:33.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:33.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.342][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:33.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:33.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:33.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:33.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:33.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:33.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:33.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:33.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:33.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:33.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.366][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:33.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:33.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.371][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:33.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:33.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.376][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:33.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:33.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.380][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:33.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:33.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:33.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:33.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.390][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:33.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:33.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.395][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:33.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:33.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.400][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:33.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:33.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.404][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:33.406][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:06:33.407][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:06:33.408][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:06:33.409][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:06:33.410][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:33.412][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:33.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.414][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.415][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:33.417][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:33.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.419][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.420][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:33.421][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:33.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.424][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.425][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:33.426][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:33.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.428][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.429][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:33.431][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:33.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.433][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.434][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:33.435][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:33.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.438][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.439][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:33.440][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:33.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.442][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.443][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:33.445][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:33.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.447][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.448][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:33.449][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:33.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.452][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.453][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:33.454][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:33.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.456][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.458][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:33.459][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:33.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.461][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.462][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:33.463][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:33.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.466][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.467][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:33.468][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:33.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.470][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.472][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:33.473][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:33.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.475][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.476][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:33.477][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:33.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.480][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.481][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:33.482][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:33.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.484][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.486][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:33.487][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:33.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.489][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.490][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:33.491][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:33.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.494][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.495][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:33.496][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:33.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.498][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.500][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:33.501][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:06:33.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.503][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.504][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:33.505][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:33.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.508][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.509][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:33.510][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:33.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.512][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.514][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:33.515][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:33.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.517][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.518][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:33.520][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:33.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.522][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.523][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:33.524][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:33.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.526][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.528][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:06:33.529][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:06:33.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.531][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.532][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:33.534][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:06:33.535][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:33.536][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:33.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.538][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.539][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:33.541][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:33.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.543][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.544][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:33.545][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:33.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.548][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.549][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:33.550][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:33.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.552][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.553][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:33.555][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:33.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.557][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.558][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:33.559][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:33.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.562][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.563][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:33.564][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:33.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.566][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.568][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:33.569][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:33.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.571][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.572][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:33.574][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:33.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.576][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.577][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:33.578][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:33.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.580][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.582][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:33.583][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:33.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.585][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.586][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:06:33.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:33.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:33.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:33.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:33.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:06:33.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:06:33.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.609][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:33.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:33.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.613][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:33.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:33.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.618][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:06:33.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:06:33.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:33.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:33.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:33.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:33.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:06:33.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:06:33.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.638][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:33.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:33.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.642][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:33.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:33.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.647][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:06:33.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:06:33.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:33.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:33.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:33.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:33.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.661][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:06:33.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:06:33.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:33.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:33.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:33.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:33.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.676][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:06:33.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:06:33.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:33.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:33.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:33.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:33.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:33.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:06:33.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:33.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:33.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:33.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:33.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:33.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:06:33.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.709][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:33.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:33.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.714][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:33.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:33.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.719][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:06:33.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:06:33.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.724][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:33.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:33.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.728][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:33.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:33.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.733][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:06:33.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:06:33.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.738][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:33.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:33.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.743][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:33.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:33.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.748][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:06:33.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:06:33.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.757][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2025-08-09 16:06:33.759][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:06:33.760][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-09 16:06:33.766][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:06:33.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:06:33.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.771][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:06:33.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:06:33.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:06:33.776][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:06:33.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:06:33.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:06:33.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-09 16:06:33.785][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-08-09 16:06:33.787][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-08-09 16:06:33.788][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-08-09 16:06:33.789][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-08-09 16:06:33.790][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:06:33.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:06:33.792][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:06:33.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:06:33.794][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:06:33.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1398 ]
> 
> proc.time()
   user  system elapsed 
  90.45    7.07  186.96

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.14.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck'
* using R version 4.5.1 (2025-06-13 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using options '--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error'
* checking for file 'biodbChebi/DESCRIPTION' ... OK
* this is package 'biodbChebi' version '1.14.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbChebi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in 'longtests' ... OK
* checking tests in 'longtests' ...
  Running 'testthat.R'
 OK
* DONE

Status: OK

Installation output

biodbChebi.Rcheck/00install.out

* installing *source* package 'biodbChebi' ...
** this is package 'biodbChebi' version '1.14.0'
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)