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This page was generated on 2025-10-16 11:39 -0400 (Thu, 16 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4833
merida1macOS 12.7.6 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4614
kjohnson1macOS 13.7.5 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4555
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4586
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1180/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
maSigPro 1.80.0  (landing page)
Maria Jose Nueda
Snapshot Date: 2025-10-13 13:40 -0400 (Mon, 13 Oct 2025)
git_url: https://git.bioconductor.org/packages/maSigPro
git_branch: RELEASE_3_21
git_last_commit: 8b80c73
git_last_commit_date: 2025-04-15 09:37:14 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.7.5 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  


CHECK results for maSigPro on merida1

To the developers/maintainers of the maSigPro package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/maSigPro.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: maSigPro
Version: 1.80.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings maSigPro_1.80.0.tar.gz
StartedAt: 2025-10-14 06:00:07 -0400 (Tue, 14 Oct 2025)
EndedAt: 2025-10-14 06:05:50 -0400 (Tue, 14 Oct 2025)
EllapsedTime: 343.1 seconds
RetCode: 0
Status:   OK  
CheckDir: maSigPro.Rcheck
Warnings: 0

Command output

##############################################################################
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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings maSigPro_1.80.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/maSigPro.Rcheck’
* using R version 4.5.1 RC (2025-06-05 r88288)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘maSigPro/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘maSigPro’ version ‘1.80.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘maSigPro’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
getDS         25.757  0.335  29.010
getDSPatterns 25.519  0.127  26.808
ISOdata       25.195  0.317  27.002
IsoModel      25.076  0.308  26.677
seeDS         25.214  0.141  26.164
tableDS       25.208  0.139  26.893
PodiumChange  25.079  0.183  26.402
ISOdesign     24.874  0.189  26.314
IsoPlot       24.795  0.167  26.020
T.fit         13.111  0.257  15.629
get.siggenes   5.963  0.045   6.683
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

maSigPro.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL maSigPro
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’
* installing *source* package ‘maSigPro’ ...
** this is package ‘maSigPro’ version ‘1.80.0’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (maSigPro)

Tests output


Example timings

maSigPro.Rcheck/maSigPro-Ex.timings

nameusersystemelapsed
ISOdata25.195 0.31727.002
ISOdesign24.874 0.18926.314
IsoModel25.076 0.30826.677
IsoPlot24.795 0.16726.020
NBdata0.0020.0020.004
NBdesign0.0020.0020.003
PlotGroups0.0640.0030.070
PlotProfiles0.0070.0010.008
PodiumChange25.079 0.18326.402
T.fit13.111 0.25715.629
average.rows0.0050.0010.006
data.abiotic0.0050.0020.008
edesign.abiotic0.0030.0030.009
edesignCT0.0010.0020.004
edesignDR0.0020.0030.006
get.siggenes5.9630.0456.683
getDS25.757 0.33529.010
getDSPatterns25.519 0.12726.808
i.rank0.0000.0000.003
maSigProUsersGuide0.0060.0070.016
make.design.matrix0.0110.0230.036
p.vector3.8770.0444.136
position0.0010.0010.001
reg.coeffs0.0000.0000.001
see.genes1.4350.0471.551
seeDS25.214 0.14126.164
stepback0.0470.0030.050
stepfor0.2030.0030.205
suma2Venn0.0360.0030.040
tableDS25.208 0.13926.893
two.ways.stepback0.1770.0030.183
two.ways.stepfor0.2240.0030.233