Back to Multiple platform build/check report for BioC 3.21:   simplified   long
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This page was generated on 2025-09-29 11:38 -0400 (Mon, 29 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4827
merida1macOS 12.7.5 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4608
kjohnson1macOS 13.6.6 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4549
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4580
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 207/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodbHmdb 1.14.0  (landing page)
Pierrick Roger
Snapshot Date: 2025-09-25 13:40 -0400 (Thu, 25 Sep 2025)
git_url: https://git.bioconductor.org/packages/biodbHmdb
git_branch: RELEASE_3_21
git_last_commit: a7f0a0f
git_last_commit_date: 2025-04-15 12:42:50 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    OK    WARNINGS  


CHECK results for biodbHmdb on merida1

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbHmdb
Version: 1.14.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.14.0.tar.gz
StartedAt: 2025-09-26 00:40:48 -0400 (Fri, 26 Sep 2025)
EndedAt: 2025-09-26 00:42:50 -0400 (Fri, 26 Sep 2025)
EllapsedTime: 122.7 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbHmdb.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.14.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck’
* using R version 4.5.1 RC (2025-06-05 r88288)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.14.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.


Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’
* installing *source* package ‘biodbHmdb’ ...
** this is package ‘biodbHmdb’ version ‘1.14.0’
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c EntryMaker.cpp -o EntryMaker.o
EntryMaker.cpp:6:5: warning: field 'accession_tag' will be initialized after field 'closed' [-Wreorder-ctor]
    accession_tag("<accession>", "</accession>"),
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    closed(true)
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c FileEntryMaker.cpp -o FileEntryMaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c TagDetector.cpp -o TagDetector.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c XmlSplitter.cpp -o XmlSplitter.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c extractXmlEntries.cpp -o extractXmlEntries.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-100-TagDetector.cpp -o test-100-TagDetector.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-runner.cpp -o test-runner.o
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  ‘biodbHmdb’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R version 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-09-26 00:41:50.362][biodb::testContext]
biodb.INFO [2025-09-26 00:41:50.368][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-26 00:41:50.371][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-09-26 00:41:50.374][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-26 00:41:50.377][biodb::testContext]
biodb.INFO [2025-09-26 00:41:50.381][biodb::testThat]
biodb.INFO [2025-09-26 00:41:50.400][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2025-09-26 00:41:50.403][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 00:41:50.405][biodb::testThat]
biodb.INFO [2025-09-26 00:41:50.659][biodb::testContext]
biodb.INFO [2025-09-26 00:41:50.662][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-26 00:41:50.663][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-09-26 00:41:50.665][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-26 00:41:50.666][biodb::testContext]
biodb.INFO [2025-09-26 00:41:50.682][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-09-26 00:41:50.687][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-09-26 00:41:50.702][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-26 00:41:50.705][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-09-26 00:41:50.707][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-09-26 00:41:50.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:50.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:50.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:50.718][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-09-26 00:41:50.782][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-09-26 00:41:50.785][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:50.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:50.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:50.794][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-09-26 00:41:50.796][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-09-26 00:41:50.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:50.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:50.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:50.804][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-09-26 00:41:50.806][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-09-26 00:41:50.809][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-09-26 00:41:50.811][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:50.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:50.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:50.817][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-09-26 00:41:50.819][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-09-26 00:41:50.821][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-09-26 00:41:50.823][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:50.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:50.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:50.829][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-09-26 00:41:50.832][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-09-26 00:41:50.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:50.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:50.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:50.841][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-09-26 00:41:50.843][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-09-26 00:41:50.845][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-09-26 00:41:50.848][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:50.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:50.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:50.855][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-09-26 00:41:50.857][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-09-26 00:41:50.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:50.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:50.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:50.866][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-09-26 00:41:50.868][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-09-26 00:41:50.871][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-09-26 00:41:50.873][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:50.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:50.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:50.879][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-09-26 00:41:50.881][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-09-26 00:41:50.884][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-09-26 00:41:50.886][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-09-26 00:41:50.888][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-09-26 00:41:50.891][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-09-26 00:41:50.893][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:50.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:50.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:50.900][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-09-26 00:41:50.902][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-09-26 00:41:50.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:50.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:50.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:50.911][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-09-26 00:41:50.913][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-09-26 00:41:50.915][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:50.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:50.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:50.922][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-09-26 00:41:50.924][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-09-26 00:41:50.926][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:50.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:50.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:50.933][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-09-26 00:41:50.935][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-09-26 00:41:50.937][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:50.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:50.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:50.944][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-09-26 00:41:50.946][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-09-26 00:41:50.949][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:50.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:50.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:50.955][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-09-26 00:41:50.958][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-09-26 00:41:50.978][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-09-26 00:41:50.980][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:50.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:50.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:50.986][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-09-26 00:41:50.988][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-09-26 00:41:50.991][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-09-26 00:41:50.993][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:50.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:50.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:51.004][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-09-26 00:41:51.088][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-26 00:41:51.131][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-09-26 00:41:51.133][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-26 00:41:51.136][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-26 00:41:51.138][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-26 00:41:51.141][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-26 00:41:51.143][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-26 00:41:51.145][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-26 00:41:51.148][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-26 00:41:51.149][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-26 00:41:51.151][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-26 00:41:51.152][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-09-26 00:41:51.155][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-26 00:41:51.158][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-26 00:41:51.160][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-26 00:41:51.163][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-26 00:41:51.163][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-26 00:41:51.163][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-26 00:41:51.163][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-26 00:41:51.163][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-26 00:41:51.165][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-26 00:41:51.168][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 00:41:51.170][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 00:41:51.172][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-26 00:41:51.182][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 00:41:51.184][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 00:41:51.186][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-26 00:41:51.188][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-26 00:41:51.191][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 00:41:51.192][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 00:41:51.195][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-26 00:41:51.197][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-26 00:41:51.200][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-09-26 00:41:51.204][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-26 00:41:51.206][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-09-26 00:41:51.208][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-26 00:41:51.211][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-26 00:41:51.213][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-26 00:41:51.215][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-26 00:41:51.217][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-26 00:41:51.220][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-26 00:41:51.222][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-26 00:41:51.224][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-26 00:41:51.226][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-26 00:41:51.228][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-09-26 00:41:51.230][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-26 00:41:51.233][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-26 00:41:51.235][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-26 00:41:51.237][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-26 00:41:51.237][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-26 00:41:51.237][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-26 00:41:51.237][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-26 00:41:51.237][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-26 00:41:51.239][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-26 00:41:51.241][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 00:41:51.244][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 00:41:51.246][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-26 00:41:51.248][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 00:41:51.250][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 00:41:51.252][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-26 00:41:51.254][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-26 00:41:51.256][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 00:41:51.258][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 00:41:51.260][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-26 00:41:51.262][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-26 00:41:51.265][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-09-26 00:41:51.269][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-26 00:41:51.271][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-09-26 00:41:51.274][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-26 00:41:51.276][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-26 00:41:51.278][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-26 00:41:51.280][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-26 00:41:51.282][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-26 00:41:51.285][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-26 00:41:51.287][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-26 00:41:51.289][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-26 00:41:51.291][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-26 00:41:51.293][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-09-26 00:41:51.295][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-26 00:41:51.298][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-26 00:41:51.300][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-26 00:41:51.302][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-26 00:41:51.304][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-26 00:41:51.306][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 00:41:51.309][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 00:41:51.311][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-26 00:41:51.313][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 00:41:51.316][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 00:41:51.318][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-26 00:41:51.320][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-26 00:41:51.323][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 00:41:51.325][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 00:41:51.327][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-26 00:41:51.329][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-26 00:41:51.332][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-09-26 00:41:51.336][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-26 00:41:51.339][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-09-26 00:41:51.342][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-26 00:41:51.345][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-26 00:41:51.347][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-26 00:41:51.349][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-26 00:41:51.351][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-26 00:41:51.353][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-26 00:41:51.356][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-26 00:41:51.358][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-26 00:41:51.360][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-26 00:41:51.363][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-09-26 00:41:51.365][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-26 00:41:51.367][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-26 00:41:51.369][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-26 00:41:51.371][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-26 00:41:51.373][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-26 00:41:51.376][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 00:41:51.377][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 00:41:51.380][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-26 00:41:51.382][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 00:41:51.384][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 00:41:51.386][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-26 00:41:51.388][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-26 00:41:51.391][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 00:41:51.393][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 00:41:51.395][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-26 00:41:51.397][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-26 00:41:51.405][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-26 00:41:51.407][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:51.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:51.412][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:51.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:51.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:51.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:51.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:51.422][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:51.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:51.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:51.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:51.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:51.432][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:51.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:51.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:51.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:51.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:51.442][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:51.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:51.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:51.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:51.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:51.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:51.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:51.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:51.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:51.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:51.463][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:51.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:51.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:51.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:51.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:51.472][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:51.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:51.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:51.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:51.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:51.482][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:51.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:51.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:51.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:51.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:51.493][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:51.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:51.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:51.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:51.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:51.503][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:51.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:51.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:51.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:51.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:51.514][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:51.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:51.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:51.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:51.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:51.524][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:51.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:51.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:51.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:51.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:51.534][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:51.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:51.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:51.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:51.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:51.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:51.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:51.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:51.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:51.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:51.554][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:51.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:51.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:51.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:51.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:51.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:51.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:51.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:51.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:51.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:51.583][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:51.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:51.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:51.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:51.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:51.593][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-09-26 00:41:51.603][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-09-26 00:41:51.606][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-09-26 00:41:51.610][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-09-26 00:41:51.613][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-09-26 00:41:51.617][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-09-26 00:41:51.620][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-09-26 00:41:51.624][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-09-26 00:41:51.628][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-09-26 00:41:51.631][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-09-26 00:41:51.635][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-26 00:41:51.638][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-09-26 00:41:51.641][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-09-26 00:41:51.644][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-09-26 00:41:51.648][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-09-26 00:41:51.651][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-09-26 00:41:51.654][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-09-26 00:41:51.657][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-09-26 00:41:51.661][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-09-26 00:41:51.664][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-09-26 00:41:51.668][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-09-26 00:41:51.672][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-09-26 00:41:51.675][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-09-26 00:41:51.679][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-09-26 00:41:51.683][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-09-26 00:41:51.686][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-09-26 00:41:51.690][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-09-26 00:41:51.694][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-09-26 00:41:51.697][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-09-26 00:41:51.700][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-09-26 00:41:51.704][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-09-26 00:41:51.707][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-09-26 00:41:51.711][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-09-26 00:41:51.714][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-09-26 00:41:51.718][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-09-26 00:41:51.721][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-09-26 00:41:51.724][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-09-26 00:41:51.728][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-09-26 00:41:51.731][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-09-26 00:41:51.735][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-09-26 00:41:51.738][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-09-26 00:41:51.741][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-09-26 00:41:51.744][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-09-26 00:41:51.748][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-09-26 00:41:51.751][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-09-26 00:41:51.755][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-09-26 00:41:51.759][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-09-26 00:41:51.762][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-09-26 00:41:51.766][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-09-26 00:41:51.769][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-09-26 00:41:51.772][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-09-26 00:41:51.776][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-09-26 00:41:51.779][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-09-26 00:41:51.783][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-09-26 00:41:51.786][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-09-26 00:41:51.789][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-09-26 00:41:51.793][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-09-26 00:41:51.797][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-09-26 00:41:51.801][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-09-26 00:41:51.805][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-09-26 00:41:51.808][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-09-26 00:41:51.811][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-09-26 00:41:51.815][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-09-26 00:41:51.818][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-09-26 00:41:51.822][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-09-26 00:41:51.826][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-09-26 00:41:51.829][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-09-26 00:41:51.833][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-09-26 00:41:51.837][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-09-26 00:41:51.841][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-09-26 00:41:51.844][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-09-26 00:41:51.847][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-09-26 00:41:51.851][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-09-26 00:41:51.854][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-09-26 00:41:51.858][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-09-26 00:41:51.861][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-09-26 00:41:51.864][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-09-26 00:41:51.867][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-09-26 00:41:51.871][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-09-26 00:41:51.874][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-09-26 00:41:51.878][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-09-26 00:41:51.881][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-09-26 00:41:51.884][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-09-26 00:41:51.899][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-09-26 00:41:51.902][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-09-26 00:41:51.909][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-26 00:41:51.911][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:51.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:51.915][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:51.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:51.929][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:51.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:41:51.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:41:51.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:51.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:51.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:51.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:51.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:51.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:41:51.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:41:51.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:51.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:51.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:51.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:51.958][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:51.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:41:51.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:41:51.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:51.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:51.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:51.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:51.973][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:51.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:41:51.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:41:51.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:51.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:51.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:51.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:51.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:51.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:41:51.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:41:52.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:52.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:52.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:52.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:52.039][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:52.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:41:52.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:41:52.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:52.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:52.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:52.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:52.053][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:52.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:41:52.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:41:52.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:52.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:52.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:52.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:52.066][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:52.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:41:52.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:41:52.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:52.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:52.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:52.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:52.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:52.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:41:52.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:41:52.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:52.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:52.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:52.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:52.095][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:52.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:41:52.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:41:52.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:52.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:52.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:52.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:52.109][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:52.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:41:52.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:41:52.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:52.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:52.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:52.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:52.123][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:52.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:41:52.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:41:52.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:52.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:52.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:52.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:52.137][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:52.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:41:52.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:41:52.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:52.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:52.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:52.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:52.152][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:52.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:41:52.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:41:52.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:52.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:52.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:52.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:52.167][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:52.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:41:52.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:41:52.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:52.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:52.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:52.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:52.181][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:52.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:41:52.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:41:52.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:52.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:52.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:52.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:52.195][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:41:52.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:41:52.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:41:52.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:52.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:52.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:52.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:41:52.210][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-09-26 00:41:52.236][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-09-26 00:41:52.240][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-26 00:41:52.243][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-09-26 00:41:52.245][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-26 00:41:52.248][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-26 00:41:52.250][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-09-26 00:41:52.253][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-09-26 00:41:52.255][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-09-26 00:41:52.258][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-26 00:41:52.260][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-09-26 00:41:52.263][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-26 00:41:52.265][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-26 00:41:52.268][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-09-26 00:41:52.271][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-26 00:41:52.273][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-09-26 00:41:52.273][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-09-26 00:41:52.273][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-09-26 00:41:52.273][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-09-26 00:41:52.273][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-09-26 00:41:52.273][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-09-26 00:41:52.273][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-09-26 00:41:52.273][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-09-26 00:41:52.273][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-09-26 00:41:52.273][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-09-26 00:41:52.273][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-09-26 00:41:52.273][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-09-26 00:41:52.273][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-09-26 00:41:52.273][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-09-26 00:41:52.273][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-09-26 00:41:52.273][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-09-26 00:41:52.273][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-09-26 00:41:52.273][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-09-26 00:41:52.276][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-09-26 00:41:52.279][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-26 00:41:52.279][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-09-26 00:41:52.279][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-09-26 00:41:52.281][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-09-26 00:41:52.284][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 00:41:52.286][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 00:41:52.288][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-26 00:41:52.291][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 00:41:52.293][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 00:41:52.295][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-26 00:41:52.297][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-09-26 00:41:52.297][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-09-26 00:41:52.300][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 00:41:52.302][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 00:41:52.304][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-09-26 00:41:52.307][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-26 00:41:52.322][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-09-26 00:41:52.326][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-09-26 00:41:52.329][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-09-26 00:41:52.333][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-26 00:41:52.337][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-09-26 00:41:52.379][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-09-26 00:41:52.382][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-09-26 00:41:52.389][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-09-26 00:41:52.397][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-09-26 00:41:52.405][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-26 00:41:52.408][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-26 00:41:52.411][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-09-26 00:41:52.413][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-09-26 00:41:52.415][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-09-26 00:41:52.415][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-09-26 00:41:52.418][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 00:41:52.420][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 00:41:52.422][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-09-26 00:41:52.424][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-09-26 00:41:52.427][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-09-26 00:41:52.481][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-09-26 00:41:52.483][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-26 00:41:52.486][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-26 00:41:52.489][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-09-26 00:41:52.492][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-26 00:41:52.494][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-09-26 00:41:52.508][biodb::testThat]
biodb.INFO [2025-09-26 00:41:52.510][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-09-26 00:41:52.511][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 00:41:52.513][biodb::testThat]
biodb.TRACE[2025-09-26 00:41:52.520][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-09-26 00:41:52.523][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-09-26 00:41:52.530][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-09-26 00:41:52.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-26 00:41:52.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:41:52.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:41:52.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:52.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:52.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:52.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-26 00:41:52.590][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:52.593][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:52.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.599][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:52.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:52.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.645][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:52.648][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:52.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.653][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.721][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:52.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:52.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.730][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:41:52.732][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:41:52.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.737][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.740][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:41:52.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:41:52.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.749][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:41:52.752][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:41:52.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.755][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.758][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:41:52.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:41:52.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.767][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:41:52.770][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:41:52.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.774][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:41:52.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:41:52.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.787][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:52.790][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:52.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.794][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:52.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:52.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.815][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:52.817][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:52.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.822][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.824][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:52.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:52.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.835][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:52.838][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:52.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.842][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.844][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:52.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:52.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.853][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:52.855][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:52.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.859][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:52.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:52.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.871][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:52.873][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:52.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.877][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:52.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:52.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.889][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:41:52.892][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:41:52.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.896][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.899][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:41:52.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:41:52.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.908][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:41:52.911][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:41:52.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.915][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.918][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:41:52.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:41:52.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.927][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:41:52.929][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:41:52.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.933][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:41:52.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:41:52.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.945][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:52.947][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:52.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.952][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:52.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:52.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.963][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:52.966][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:52.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.970][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.972][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:52.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:52.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.981][ef$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:41:52.983][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:41:52.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.988][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:52.990][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:41:52.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:41:52.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:52.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.000][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:41:53.003][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:41:53.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.029][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.032][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:41:53.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:41:53.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.041][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-09-26 00:41:53.043][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:41:53.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.048][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.050][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-09-26 00:41:53.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:41:53.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:53.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:53.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:53.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:53.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:53.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:53.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.182][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:41:53.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:41:53.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.191][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:41:53.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:41:53.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.200][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:41:53.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:41:53.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.209][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:41:53.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:41:53.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.217][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:41:53.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:41:53.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.227][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:41:53.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:41:53.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:41:53.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:41:53.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:41:53.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:41:53.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:41:53.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:41:53.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:53.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:53.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:53.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:53.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:53.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:53.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:53.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:53.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:53.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:53.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:53.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:53.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:53.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:53.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:53.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:53.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:53.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:53.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 00:41:53.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:41:53.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 00:41:53.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:41:53.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 00:41:53.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:41:53.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.373][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:41:53.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:41:53.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.382][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:41:53.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:41:53.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.392][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:41:53.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:41:53.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.402][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:41:53.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:41:53.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.411][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:41:53.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:41:53.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.421][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:41:53.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:41:53.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:41:53.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:41:53.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:41:53.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:41:53.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:41:53.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:41:53.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:41:53.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:41:53.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:41:53.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:41:53.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.483][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:41:53.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:41:53.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.493][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:53.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:53.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.503][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:53.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:53.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.513][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:53.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:53.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:53.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:53.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:53.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:53.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:53.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:53.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.553][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:53.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:53.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.563][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:53.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:53.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.572][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:53.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:53.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:53.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:53.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:53.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:53.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:53.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:53.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.611][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:53.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:53.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.621][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:53.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:53.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.633][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:53.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:53.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.643][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:41:53.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:41:53.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.652][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:41:53.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:41:53.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:41:53.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:41:53.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.672][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-09-26 00:41:53.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:41:53.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:41:53.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:41:53.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:41:53.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:41:53.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:41:53.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:41:53.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.712][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-09-26 00:41:53.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:41:53.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.768][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:53.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:53.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.777][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:53.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:53.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.787][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:53.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:53.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.796][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:53.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:53.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.806][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:53.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:53.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.816][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:41:53.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:41:53.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.833][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:41:53.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:41:53.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:53.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:53.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.853][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:41:53.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:41:53.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:53.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:53.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:53.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:53.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:53.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:53.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:53.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:53.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:53.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:53.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:53.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:53.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 00:41:53.924][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-09-26 00:41:53.930][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-26 00:41:53.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-26 00:41:53.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.940][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-26 00:41:53.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-26 00:41:53.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.951][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-26 00:41:53.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-26 00:41:53.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:53.962][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-26 00:41:53.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-26 00:41:53.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:53.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:54.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:54.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.023][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:41:54.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:41:54.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:54.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:54.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:54.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:54.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:54.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:54.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:54.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:54.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:54.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:54.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:54.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:54.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.097][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:41:54.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:41:54.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.107][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:41:54.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:41:54.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.116][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:41:54.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:41:54.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:54.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:54.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:54.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:54.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:54.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:54.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.171][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:54.173][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:54.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.186][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:54.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:54.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.217][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:54.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:54.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.226][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:54.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:54.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.236][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:54.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:54.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.246][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:54.248][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:54.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.252][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.255][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:54.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:54.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:54.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:54.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:54.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:54.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:54.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:54.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.313][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:54.315][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:54.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.320][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:54.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:54.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.354][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:54.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:54.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:54.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:54.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.372][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:54.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:54.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.382][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:54.385][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:54.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.389][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:54.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:54.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:41:54.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:41:54.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:41:54.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:41:54.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:41:54.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:41:54.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.447][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:41:54.450][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:41:54.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.454][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:41:54.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:41:54.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.481][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:54.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:54.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.490][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:54.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:54.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.500][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:54.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:54.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.510][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:54.512][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:54.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.516][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.519][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:54.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:54.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.557][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:54.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:54.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.567][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:54.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:54.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.577][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:54.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:54.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.586][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:54.589][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:54.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.593][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.595][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:54.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:54.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.622][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:41:54.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:41:54.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.632][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:41:54.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:41:54.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.642][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:41:54.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:41:54.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.651][ef$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:41:54.654][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:41:54.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.659][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.662][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:41:54.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:41:54.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.696][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:41:54.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:41:54.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.707][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:41:54.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:41:54.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.717][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:41:54.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:41:54.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.727][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:41:54.729][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:41:54.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.734][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.736][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:41:54.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:41:54.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.767][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:41:54.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:41:54.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.777][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:41:54.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:41:54.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.787][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:41:54.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:41:54.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.798][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:41:54.801][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:41:54.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.806][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.809][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:41:54.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:41:54.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:54.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:54.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:54.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:54.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:54.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:54.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.867][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:54.870][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:54.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.874][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:54.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:54.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 00:41:54.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:41:54.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 00:41:54.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:41:54.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.932][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 00:41:54.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:41:54.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.941][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 00:41:54.944][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:41:54.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.948][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 00:41:54.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:41:54.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.976][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:54.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:54.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:54.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:54.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:54.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:54.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:54.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:55.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.006][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:55.009][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:55.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.013][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:55.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:55.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.044][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:55.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:55.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:55.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:55.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:55.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:55.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.074][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:55.076][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:55.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.081][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:55.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:55.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.112][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:41:55.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:41:55.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.122][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:41:55.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:41:55.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.132][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:41:55.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:41:55.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.143][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:41:55.145][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:41:55.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.150][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.153][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:41:55.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:41:55.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:41:55.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:41:55.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:41:55.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:41:55.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:41:55.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:41:55.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.208][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:41:55.210][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:41:55.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.215][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.217][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:41:55.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:41:55.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:41:55.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:41:55.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.260][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:41:55.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:41:55.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.270][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:41:55.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:41:55.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.281][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:41:55.284][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:41:55.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.289][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.291][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:41:55.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:41:55.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.321][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:41:55.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:41:55.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.332][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:41:55.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:41:55.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.342][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:41:55.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:41:55.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.352][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:41:55.355][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:41:55.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.359][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.362][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:41:55.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:41:55.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.394][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:55.397][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:55.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.402][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.413][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:41:55.416][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:41:55.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.421][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.452][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:41:55.456][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:41:55.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.461][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.519][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:41:55.521][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:41:55.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.526][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.537][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:55.540][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:55.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.545][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.557][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:55.560][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:55.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.565][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.576][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:55.579][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:55.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.584][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.595][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 00:41:55.598][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:41:55.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.603][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.615][ef$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:41:55.618][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:41:55.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.623][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.635][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:41:55.638][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:41:55.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.643][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.655][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:41:55.658][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:41:55.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.663][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.684][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:41:55.687][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:41:55.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.692][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.703][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:55.706][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:55.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.710][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.721][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:55.724][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:55.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.728][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.738][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:55.741][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:55.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.745][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.756][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:55.759][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:55.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.762][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.773][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:55.776][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:55.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.780][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:55.792][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:41:55.795][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:41:55.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:55.799][ef$get] fields variable is a list.
biodb.INFO [2025-09-26 00:41:55.817][biodb::testThat]
biodb.INFO [2025-09-26 00:41:55.819][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-09-26 00:41:55.822][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 00:41:55.824][biodb::testThat]
biodb.DEBUG[2025-09-26 00:41:55.861][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-09-26 00:41:55.875][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-09-26 00:41:55.887][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:41:55.890][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-09-26 00:41:55.895][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-09-26 00:41:55.898][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-09-26 00:41:55.902][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-09-26 00:41:55.905][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-09-26 00:41:55.969][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-09-26 00:41:55.971][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-09-26 00:41:55.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-26 00:41:55.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:41:55.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:41:55.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:41:55.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:41:55.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:41:55.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-26 00:41:56.007][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:56.009][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:56.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.015][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:56.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:56.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.036][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:56.039][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:56.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.043][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.046][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:56.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:56.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.056][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:41:56.059][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:41:56.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.064][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.067][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:41:56.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:41:56.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.076][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:41:56.079][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:41:56.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.083][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.086][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:41:56.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:41:56.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.096][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:41:56.098][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:41:56.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.102][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:41:56.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:41:56.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.115][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:56.118][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:56.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.123][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:56.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:56.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.136][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:56.139][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:56.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.143][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.146][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:56.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:56.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.156][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:56.159][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:56.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.163][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.166][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:56.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:56.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.175][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:56.178][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:56.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.182][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:56.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:56.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.195][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:56.198][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:56.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.203][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:56.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:56.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.216][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:41:56.218][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:41:56.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.223][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.226][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:41:56.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:41:56.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.236][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:41:56.238][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:41:56.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.243][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:41:56.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:41:56.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.255][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:41:56.258][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:41:56.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.263][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:41:56.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:41:56.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.276][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:56.279][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:56.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.283][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:56.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:56.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.296][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:56.299][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:56.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.304][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:56.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:56.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.317][ef$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:41:56.320][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:41:56.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.325][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.328][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:41:56.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:41:56.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.339][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:41:56.342][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:41:56.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.347][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.350][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:41:56.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:41:56.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.367][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-09-26 00:41:56.370][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:41:56.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.374][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.377][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-09-26 00:41:56.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:41:56.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:56.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:56.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:56.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:56.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:56.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:56.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.418][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:41:56.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:41:56.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.427][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:41:56.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:41:56.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.437][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:41:56.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:41:56.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.446][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:41:56.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:41:56.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.457][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:41:56.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:41:56.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.466][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:41:56.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:41:56.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:41:56.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:41:56.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:41:56.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:41:56.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:41:56.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:41:56.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:56.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:56.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:56.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:56.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:56.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:41:56.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:56.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:56.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:56.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:56.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:56.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:41:56.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:56.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:56.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:56.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:56.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:56.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:41:56.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 00:41:56.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:41:56.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 00:41:56.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:41:56.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.610][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 00:41:56.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:41:56.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.619][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:41:56.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:41:56.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.628][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:41:56.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:41:56.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.637][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:41:56.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:41:56.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.646][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:41:56.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:41:56.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.655][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:41:56.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:41:56.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.665][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:41:56.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:41:56.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:41:56.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:41:56.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.684][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:41:56.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:41:56.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.702][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:41:56.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:41:56.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:41:56.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:41:56.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:41:56.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:41:56.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:41:56.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:41:56.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.742][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:56.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:56.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.752][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:56.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:56.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.763][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:56.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:41:56.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:56.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:56.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:56.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:56.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:56.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:41:56.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.806][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:56.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:56.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.816][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:56.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:56.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.828][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:56.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:56.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.837][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:56.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:56.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:56.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:56.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.855][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:56.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:41:56.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.864][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:56.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:56.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.874][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:56.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:56.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.884][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:56.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:56.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.895][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:41:56.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:41:56.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.905][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:41:56.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:41:56.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.915][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:41:56.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:41:56.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.925][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-09-26 00:41:56.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:41:56.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:41:56.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:41:56.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.948][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:41:56.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:41:56.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.961][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:41:56.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:41:56.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.972][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-09-26 00:41:56.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:41:56.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.984][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:56.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:56.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:56.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:56.995][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:56.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:56.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:57.004][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:57.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:57.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:57.015][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:57.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:57.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:57.028][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:57.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:57.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:57.043][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:41:57.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:41:57.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:57.060][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:41:57.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:41:57.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:57.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:57.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:57.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:57.081][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:41:57.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:41:57.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:57.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:57.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:57.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:57.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:57.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:57.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:57.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:57.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:57.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:57.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:57.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:57.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:57.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:57.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:57.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:57.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:41:57.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:41:57.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 00:41:57.159][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-09-26 00:41:57.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-09-26 00:41:57.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-09-26 00:41:57.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:57.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-09-26 00:41:57.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-09-26 00:41:57.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:57.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-09-26 00:41:57.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-09-26 00:41:57.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-09-26 00:41:57.203][biodb::testThat]
biodb.INFO [2025-09-26 00:41:57.205][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-09-26 00:41:57.208][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 00:41:57.210][biodb::testThat]
biodb.TRACE[2025-09-26 00:41:57.217][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:57.220][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:57.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.226][ef$get] fields variable is a list.
biodb.DEBUG[2025-09-26 00:41:57.230][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-09-26 00:41:57.295][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:57.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:57.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:57.305][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:57.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:57.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:57.314][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:57.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:57.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 00:41:57.329][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-09-26 00:41:57.332][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-09-26 00:41:57.334][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-09-26 00:41:57.336][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-09-26 00:41:57.340][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:41:57.344][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:41:57.348][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-09-26 00:41:57.352][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:41:57.354][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-09-26 00:41:57.358][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-09-26 00:41:57.360][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-09-26 00:41:57.363][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-09-26 00:41:57.365][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-09-26 00:41:57.369][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-09-26 00:41:57.371][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-09-26 00:41:57.375][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:57.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:57.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:57.385][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:57.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:57.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:57.402][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:57.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:57.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:57.413][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:57.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:57.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 00:41:57.430][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-09-26 00:41:57.432][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-09-26 00:41:57.437][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-09-26 00:41:57.471][ef$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:41:57.473][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:41:57.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.478][ef$get] fields variable is a list.
biodb.DEBUG[2025-09-26 00:41:57.482][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-09-26 00:41:57.517][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:41:57.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:41:57.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:57.528][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:41:57.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:41:57.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:57.538][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:41:57.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:41:57.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 00:41:57.554][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-09-26 00:41:57.703][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-09-26 00:41:57.705][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-09-26 00:41:57.707][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-09-26 00:41:57.750][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:41:57.753][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:41:57.757][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-09-26 00:41:57.759][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:41:57.761][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-09-26 00:41:57.797][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-09-26 00:41:57.799][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-09-26 00:41:57.801][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-09-26 00:41:57.803][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-09-26 00:41:57.805][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-09-26 00:41:57.807][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-09-26 00:41:57.809][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:41:57.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:41:57.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:57.817][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:41:57.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:41:57.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:57.826][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:41:57.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:41:57.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:57.835][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:41:57.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:41:57.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 00:41:57.845][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-09-26 00:41:57.847][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-09-26 00:41:57.849][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-09-26 00:41:57.877][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:57.880][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:57.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.884][ef$get] fields variable is a list.
biodb.DEBUG[2025-09-26 00:41:57.887][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-09-26 00:41:57.918][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:57.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:57.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:57.928][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:57.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:57.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:57.937][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:57.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:57.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:57.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 00:41:57.952][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-09-26 00:41:57.956][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-09-26 00:41:57.958][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-09-26 00:41:57.960][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-09-26 00:41:57.964][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:41:57.968][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:41:57.971][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-09-26 00:41:57.975][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:41:57.977][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-09-26 00:41:57.980][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-09-26 00:41:57.983][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-09-26 00:41:57.985][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-09-26 00:41:57.988][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-09-26 00:41:57.990][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-09-26 00:41:57.993][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-09-26 00:41:57.998][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:58.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:58.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:58.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:58.008][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:58.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:58.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:58.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:58.018][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:58.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:58.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:58.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:58.030][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:58.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:41:58.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:58.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 00:41:58.042][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-09-26 00:41:58.044][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-09-26 00:41:58.047][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-09-26 00:41:58.145][biodb::testThat]
biodb.INFO [2025-09-26 00:41:58.148][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-09-26 00:41:58.150][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 00:41:58.153][biodb::testThat]
biodb.TRACE[2025-09-26 00:41:58.179][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:58.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:58.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:58.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:58.189][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:58.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:58.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:58.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:58.198][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:58.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:58.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:58.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 00:41:58.229][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-09-26 00:41:58.232][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-09-26 00:41:58.234][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-09-26 00:41:58.239][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:41:58.243][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:41:58.247][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-09-26 00:41:58.251][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:41:58.253][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-09-26 00:41:58.257][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-09-26 00:41:58.259][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-09-26 00:41:58.262][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-09-26 00:41:58.264][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-09-26 00:41:58.266][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-09-26 00:41:58.269][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-09-26 00:41:58.273][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:58.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:58.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:58.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:58.281][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:58.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:58.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:58.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:58.290][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:58.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:58.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:58.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:58.299][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:41:58.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:41:58.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:58.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 00:41:58.308][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-09-26 00:41:58.309][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-09-26 00:41:58.344][biodb::testThat]
biodb.INFO [2025-09-26 00:41:58.346][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-09-26 00:41:58.348][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 00:41:58.350][biodb::testThat]
biodb.TRACE[2025-09-26 00:41:58.400][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-26 00:41:58.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-26 00:41:58.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:58.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:58.409][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-26 00:41:58.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-26 00:41:58.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:58.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:58.419][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-26 00:41:58.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-26 00:41:58.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:58.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:58.429][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-26 00:41:58.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-26 00:41:58.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:58.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:58.552][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-26 00:41:58.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-26 00:41:58.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:58.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:58.562][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-26 00:41:58.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-26 00:41:58.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:58.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:58.571][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-26 00:41:58.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-26 00:41:58.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:58.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:41:58.581][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-26 00:41:58.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-26 00:41:58.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:41:58.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-09-26 00:41:58.603][biodb::testThat]
biodb.INFO [2025-09-26 00:41:58.605][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-09-26 00:41:58.607][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 00:41:58.610][biodb::testThat]
biodb.INFO [2025-09-26 00:41:58.628][biodb::testThat]
biodb.INFO [2025-09-26 00:41:58.630][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-09-26 00:41:58.633][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 00:41:58.635][biodb::testThat]
biodb.INFO [2025-09-26 00:41:58.652][biodb::testThat]
biodb.INFO [2025-09-26 00:41:58.655][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-09-26 00:41:58.657][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 00:41:58.659][biodb::testThat]
biodb.DEBUG[2025-09-26 00:41:58.668][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-09-26 00:42:21.171][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-09-26 00:42:21.270][biodb::testThat]
biodb.INFO [2025-09-26 00:42:21.272][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-09-26 00:42:21.275][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 00:42:21.277][biodb::testThat]
biodb.DEBUG[2025-09-26 00:42:33.220][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-09-26 00:42:33.299][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:33.302][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:33.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:33.307][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:33.309][ef$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:33.311][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:33.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:33.316][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:33.318][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:33.321][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:33.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:33.325][ef$get] fields variable is a list.
biodb.INFO [2025-09-26 00:42:33.328][biodb::testThat]
biodb.INFO [2025-09-26 00:42:33.331][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2025-09-26 00:42:33.333][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 00:42:33.336][biodb::testThat]
biodb.DEBUG[2025-09-26 00:42:33.356][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-09-26 00:42:33.482][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-09-26 00:42:33.486][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:42:33.490][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-09-26 00:42:33.533][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-09-26 00:42:33.536][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-09-26 00:42:33.538][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-09-26 00:42:33.541][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-09-26 00:42:33.544][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:42:33.546][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-09-26 00:42:33.549][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-09-26 00:42:33.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-26 00:42:33.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:33.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:33.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:33.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:33.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:33.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-26 00:42:33.576][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:42:33.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:42:33.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:33.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:33.625][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:42:33.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:42:33.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:33.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:33.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:33.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:33.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:33.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:33.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:33.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:33.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:33.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:33.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:33.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:33.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:33.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:33.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:33.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:33.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:33.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:33.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:33.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:33.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:33.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:33.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:33.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:33.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:33.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 00:42:33.692][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-09-26 00:42:33.694][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-09-26 00:42:33.736][biodb::testThat]
biodb.INFO [2025-09-26 00:42:33.739][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-09-26 00:42:33.741][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 00:42:33.743][biodb::testThat]
biodb.DEBUG[2025-09-26 00:42:33.763][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-09-26 00:42:33.766][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-09-26 00:42:33.768][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-09-26 00:42:33.772][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:42:33.775][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-09-26 00:42:33.780][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-09-26 00:42:33.783][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-09-26 00:42:33.785][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-09-26 00:42:33.788][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-09-26 00:42:33.791][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:42:33.794][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-09-26 00:42:33.796][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-09-26 00:42:33.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-26 00:42:33.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:33.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:33.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:33.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:33.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:33.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-26 00:42:33.825][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:42:33.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:42:33.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:33.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:33.835][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:42:33.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:42:33.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:33.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:33.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:33.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:33.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:33.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:33.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:33.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:33.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:33.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:33.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:33.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:33.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:33.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:33.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:33.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:33.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:33.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:33.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:33.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:33.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:33.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:33.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:33.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:33.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:33.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 00:42:33.902][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-09-26 00:42:33.904][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-09-26 00:42:33.906][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-09-26 00:42:33.936][biodb::testThat]
biodb.INFO [2025-09-26 00:42:33.939][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2025-09-26 00:42:33.941][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 00:42:33.943][biodb::testThat]
biodb.INFO [2025-09-26 00:42:33.998][biodb::testThat]
biodb.INFO [2025-09-26 00:42:34.000][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2025-09-26 00:42:34.002][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 00:42:34.005][biodb::testThat]
biodb.DEBUG[2025-09-26 00:42:34.010][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:42:34.031][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:42:34.035][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-09-26 00:42:34.038][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:42:34.040][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-09-26 00:42:34.043][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-09-26 00:42:34.045][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-09-26 00:42:34.048][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-09-26 00:42:34.050][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-09-26 00:42:34.068][biodb::testThat]
biodb.INFO [2025-09-26 00:42:34.070][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2025-09-26 00:42:34.073][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 00:42:34.076][biodb::testThat]
biodb.DEBUG[2025-09-26 00:42:34.081][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:42:34.085][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:42:34.088][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-09-26 00:42:34.091][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:42:34.094][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-09-26 00:42:34.097][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-09-26 00:42:34.100][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-09-26 00:42:34.102][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-09-26 00:42:34.104][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-09-26 00:42:34.129][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:34.132][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:34.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:34.143][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:34.145][ef$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:34.150][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:34.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:34.155][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:34.157][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:34.160][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:34.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:34.164][ef$get] fields variable is a list.
biodb.INFO [2025-09-26 00:42:34.166][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-09-26 00:42:34.169][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-09-26 00:42:34.197][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-09-26 00:42:34.199][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-09-26 00:42:34.201][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:34.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:34.206][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:34.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:34.210][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-09-26 00:42:34.219][biodb::testContext]
biodb.INFO [2025-09-26 00:42:34.222][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-26 00:42:34.224][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-09-26 00:42:34.226][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-26 00:42:34.229][biodb::testContext]
biodb.INFO [2025-09-26 00:42:34.237][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-09-26 00:42:34.241][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-09-26 00:42:34.249][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-26 00:42:34.252][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-09-26 00:42:34.255][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-09-26 00:42:34.257][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.264][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-09-26 00:42:34.267][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-09-26 00:42:34.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.275][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-09-26 00:42:34.278][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-09-26 00:42:34.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.287][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-09-26 00:42:34.289][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-09-26 00:42:34.291][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-09-26 00:42:34.293][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.300][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-09-26 00:42:34.302][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-09-26 00:42:34.304][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-09-26 00:42:34.306][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.313][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-09-26 00:42:34.315][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-09-26 00:42:34.317][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.324][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-09-26 00:42:34.326][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-09-26 00:42:34.329][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-09-26 00:42:34.331][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.338][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-09-26 00:42:34.340][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-09-26 00:42:34.342][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.348][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-09-26 00:42:34.351][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-09-26 00:42:34.353][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-09-26 00:42:34.355][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.362][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-09-26 00:42:34.365][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-09-26 00:42:34.367][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-09-26 00:42:34.370][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-09-26 00:42:34.372][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-09-26 00:42:34.374][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-09-26 00:42:34.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.383][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-09-26 00:42:34.385][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-09-26 00:42:34.387][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.394][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-09-26 00:42:34.397][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-09-26 00:42:34.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.406][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-09-26 00:42:34.409][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-09-26 00:42:34.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.417][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-09-26 00:42:34.420][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-09-26 00:42:34.422][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.428][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-09-26 00:42:34.430][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-09-26 00:42:34.432][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.447][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-09-26 00:42:34.449][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-09-26 00:42:34.471][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-09-26 00:42:34.473][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.479][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-09-26 00:42:34.481][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-09-26 00:42:34.484][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-09-26 00:42:34.485][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.492][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-09-26 00:42:34.496][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-26 00:42:34.498][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-09-26 00:42:34.501][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:34.503][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-26 00:42:34.505][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:34.507][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-26 00:42:34.510][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-26 00:42:34.512][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-26 00:42:34.514][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-26 00:42:34.517][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-26 00:42:34.519][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:34.521][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-09-26 00:42:34.523][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-26 00:42:34.525][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-26 00:42:34.527][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:34.530][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-26 00:42:34.530][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-26 00:42:34.530][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-26 00:42:34.530][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-26 00:42:34.530][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-26 00:42:34.531][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-26 00:42:34.533][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 00:42:34.534][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 00:42:34.535][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-26 00:42:34.537][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 00:42:34.539][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 00:42:34.541][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-26 00:42:34.544][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-26 00:42:34.546][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 00:42:34.548][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 00:42:34.550][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-26 00:42:34.553][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-26 00:42:34.556][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-09-26 00:42:34.561][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-26 00:42:34.563][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-09-26 00:42:34.566][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:34.568][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-26 00:42:34.571][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:34.573][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-26 00:42:34.576][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-26 00:42:34.579][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-26 00:42:34.582][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-26 00:42:34.585][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-26 00:42:34.587][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:34.590][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-09-26 00:42:34.593][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-26 00:42:34.595][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-26 00:42:34.598][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:34.600][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-26 00:42:34.600][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-26 00:42:34.600][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-26 00:42:34.600][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-26 00:42:34.600][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-26 00:42:34.602][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-26 00:42:34.605][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 00:42:34.607][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 00:42:34.609][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-26 00:42:34.611][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 00:42:34.613][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 00:42:34.615][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-26 00:42:34.618][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-26 00:42:34.620][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 00:42:34.622][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 00:42:34.625][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-26 00:42:34.627][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-26 00:42:34.630][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-09-26 00:42:34.635][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:34.637][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-09-26 00:42:34.640][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:34.642][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-26 00:42:34.645][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:34.647][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-26 00:42:34.649][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-26 00:42:34.652][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-26 00:42:34.654][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-26 00:42:34.657][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-26 00:42:34.660][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-26 00:42:34.662][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-09-26 00:42:34.664][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-26 00:42:34.667][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-26 00:42:34.670][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:34.672][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-26 00:42:34.675][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-26 00:42:34.677][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 00:42:34.680][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 00:42:34.682][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-26 00:42:34.685][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 00:42:34.687][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 00:42:34.689][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-26 00:42:34.692][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-26 00:42:34.694][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 00:42:34.696][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 00:42:34.698][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-26 00:42:34.701][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-26 00:42:34.704][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-09-26 00:42:34.716][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:34.719][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-09-26 00:42:34.722][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:34.724][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-26 00:42:34.727][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:34.729][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-26 00:42:34.732][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-26 00:42:34.734][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-26 00:42:34.736][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-26 00:42:34.738][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-26 00:42:34.741][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-26 00:42:34.743][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-09-26 00:42:34.745][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-26 00:42:34.748][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-26 00:42:34.750][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:34.752][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-26 00:42:34.754][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-26 00:42:34.756][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 00:42:34.758][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 00:42:34.760][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-26 00:42:34.762][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 00:42:34.764][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 00:42:34.767][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-26 00:42:34.769][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-26 00:42:34.771][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 00:42:34.773][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 00:42:34.775][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-26 00:42:34.777][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-26 00:42:34.780][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-26 00:42:34.782][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.786][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:34.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:34.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.796][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:34.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:34.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.806][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:34.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:34.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.816][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:34.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:34.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.827][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:34.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:34.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:34.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:34.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.848][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:34.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:34.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:34.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:34.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.870][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:34.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:34.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.880][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:34.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:34.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:34.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:34.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.902][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:34.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:34.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.913][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:34.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:34.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.923][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:34.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:34.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.933][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:34.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:34.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.943][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:34.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:34.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.962][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:34.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:34.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:34.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:34.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:34.973][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-09-26 00:42:34.976][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-09-26 00:42:34.979][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-09-26 00:42:34.983][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-09-26 00:42:34.986][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-09-26 00:42:34.989][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-09-26 00:42:34.993][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-09-26 00:42:34.996][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-09-26 00:42:34.999][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-09-26 00:42:35.003][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-09-26 00:42:35.006][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-26 00:42:35.009][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-09-26 00:42:35.013][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-09-26 00:42:35.017][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-09-26 00:42:35.020][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-09-26 00:42:35.024][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-09-26 00:42:35.028][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-09-26 00:42:35.031][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-09-26 00:42:35.035][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-09-26 00:42:35.039][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-09-26 00:42:35.043][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-09-26 00:42:35.047][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-09-26 00:42:35.051][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-09-26 00:42:35.054][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-09-26 00:42:35.058][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-09-26 00:42:35.061][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-09-26 00:42:35.064][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-09-26 00:42:35.068][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-09-26 00:42:35.072][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-09-26 00:42:35.075][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-09-26 00:42:35.079][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-09-26 00:42:35.082][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-09-26 00:42:35.085][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-09-26 00:42:35.089][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-09-26 00:42:35.092][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-09-26 00:42:35.096][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-09-26 00:42:35.099][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-09-26 00:42:35.103][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-09-26 00:42:35.107][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-09-26 00:42:35.111][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-09-26 00:42:35.114][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-09-26 00:42:35.118][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-09-26 00:42:35.121][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-09-26 00:42:35.125][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-09-26 00:42:35.128][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-09-26 00:42:35.132][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-09-26 00:42:35.135][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-09-26 00:42:35.139][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-09-26 00:42:35.142][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-09-26 00:42:35.146][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-09-26 00:42:35.149][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-09-26 00:42:35.152][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-09-26 00:42:35.156][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-09-26 00:42:35.159][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-09-26 00:42:35.163][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-09-26 00:42:35.167][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-09-26 00:42:35.170][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-09-26 00:42:35.174][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-09-26 00:42:35.177][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-09-26 00:42:35.181][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-09-26 00:42:35.184][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-09-26 00:42:35.187][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-09-26 00:42:35.191][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-09-26 00:42:35.194][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-09-26 00:42:35.198][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-09-26 00:42:35.201][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-09-26 00:42:35.205][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-09-26 00:42:35.208][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-09-26 00:42:35.219][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-09-26 00:42:35.223][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-09-26 00:42:35.226][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-09-26 00:42:35.230][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-09-26 00:42:35.233][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-09-26 00:42:35.237][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-09-26 00:42:35.240][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-09-26 00:42:35.244][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-09-26 00:42:35.272][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-09-26 00:42:35.275][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-09-26 00:42:35.279][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-09-26 00:42:35.282][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-09-26 00:42:35.286][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-09-26 00:42:35.289][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-09-26 00:42:35.293][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-09-26 00:42:35.296][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-09-26 00:42:35.300][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-09-26 00:42:35.303][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-26 00:42:35.305][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:35.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:35.309][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:35.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:35.313][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:35.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:35.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:35.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:35.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:35.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:35.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:35.327][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:35.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:35.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:35.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:35.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:35.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:35.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:35.342][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:35.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:35.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:35.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:35.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:35.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:35.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:35.358][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:35.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:35.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:35.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:35.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:35.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:35.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:35.381][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:35.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:35.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:35.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:35.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:35.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:35.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:35.401][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:35.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:35.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:35.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:35.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:35.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:35.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:35.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:35.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:35.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:35.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:35.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:35.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:35.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:35.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:35.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:35.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:35.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:35.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:35.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:35.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:35.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:35.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:35.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:35.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:35.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:35.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:35.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:35.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:35.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:35.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:35.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:35.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:35.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:35.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:35.481][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:35.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:35.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:35.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:35.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:35.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:35.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:35.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:35.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:35.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:35.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:35.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:35.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:35.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:35.519][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:35.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:35.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:35.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:35.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:35.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:35.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:35.536][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:35.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:35.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:35.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:35.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:35.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:35.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:35.555][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:35.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:35.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:35.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:35.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:35.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:35.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:35.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:35.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:35.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:35.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:35.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:35.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:35.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:35.587][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:35.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:35.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:35.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:35.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:35.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:35.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:35.604][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-09-26 00:42:35.608][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-09-26 00:42:35.613][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-26 00:42:35.615][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-09-26 00:42:35.618][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:35.620][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-26 00:42:35.623][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-09-26 00:42:35.626][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-09-26 00:42:35.628][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:35.631][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-26 00:42:35.633][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-09-26 00:42:35.636][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-26 00:42:35.639][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:35.642][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-09-26 00:42:35.645][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-26 00:42:35.648][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-09-26 00:42:35.648][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-09-26 00:42:35.648][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-09-26 00:42:35.648][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-09-26 00:42:35.648][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-09-26 00:42:35.648][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-09-26 00:42:35.648][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-09-26 00:42:35.648][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-09-26 00:42:35.648][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-09-26 00:42:35.648][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-09-26 00:42:35.648][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-09-26 00:42:35.648][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-09-26 00:42:35.648][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-09-26 00:42:35.648][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-09-26 00:42:35.648][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-09-26 00:42:35.648][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-09-26 00:42:35.648][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-09-26 00:42:35.648][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-09-26 00:42:35.651][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-09-26 00:42:35.654][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-26 00:42:35.654][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-09-26 00:42:35.654][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-09-26 00:42:35.657][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-09-26 00:42:35.659][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 00:42:35.661][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 00:42:35.664][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-26 00:42:35.666][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 00:42:35.668][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 00:42:35.671][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-26 00:42:35.673][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-09-26 00:42:35.673][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-09-26 00:42:35.675][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 00:42:35.678][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 00:42:35.680][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:35.681][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-26 00:42:35.685][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-09-26 00:42:35.688][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-09-26 00:42:35.692][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-09-26 00:42:35.696][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-26 00:42:35.700][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-09-26 00:42:35.705][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-09-26 00:42:35.708][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-09-26 00:42:35.711][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-09-26 00:42:35.715][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-09-26 00:42:35.718][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-26 00:42:35.721][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-26 00:42:35.724][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-09-26 00:42:35.726][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-09-26 00:42:35.728][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-09-26 00:42:35.728][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-09-26 00:42:35.731][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 00:42:35.733][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 00:42:35.735][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-09-26 00:42:35.737][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-09-26 00:42:35.740][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-09-26 00:42:35.743][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-09-26 00:42:35.746][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-26 00:42:35.749][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-26 00:42:35.752][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-09-26 00:42:35.755][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-26 00:42:35.758][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-09-26 00:42:35.762][biodb::testThat]
biodb.INFO [2025-09-26 00:42:35.764][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-09-26 00:42:35.767][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 00:42:35.769][biodb::testThat]
biodb.DEBUG[2025-09-26 00:42:35.786][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:42:35.790][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:42:35.794][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-09-26 00:42:35.797][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:42:35.800][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-09-26 00:42:35.803][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-09-26 00:42:35.806][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-09-26 00:42:35.809][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-09-26 00:42:35.812][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-09-26 00:42:35.819][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-09-26 00:42:35.833][biodb::testThat]
biodb.INFO [2025-09-26 00:42:35.836][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-09-26 00:42:35.838][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 00:42:35.840][biodb::testThat]
biodb.DEBUG[2025-09-26 00:42:35.845][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-09-26 00:42:35.847][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-09-26 00:42:35.851][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:42:35.854][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-09-26 00:42:35.859][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-09-26 00:42:35.862][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-09-26 00:42:35.866][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-09-26 00:42:35.869][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-09-26 00:42:35.872][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-09-26 00:42:35.875][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-09-26 00:42:35.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-26 00:42:35.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:35.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:35.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:35.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:35.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:35.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-26 00:42:35.906][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:35.908][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:35.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:35.911][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:35.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:35.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:35.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:35.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:35.924][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:35.926][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:35.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:35.930][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:35.933][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:35.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:35.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:35.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:35.944][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:42:35.947][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:42:35.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:35.951][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:35.954][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:42:35.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:42:35.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:35.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:35.965][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:42:35.967][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:42:35.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:35.972][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:35.974][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:42:35.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:42:35.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:35.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:35.983][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:42:35.986][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:42:35.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:35.991][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:35.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:42:35.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:42:35.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.003][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:42:36.006][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:42:36.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.010][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:42:36.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:42:36.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.023][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:42:36.025][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:42:36.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.030][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.033][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:42:36.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:42:36.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.051][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:42:36.054][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:42:36.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.058][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:42:36.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:42:36.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.071][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:42:36.074][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:42:36.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.078][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:42:36.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:42:36.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.091][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:42:36.094][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:42:36.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.098][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:42:36.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:42:36.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.132][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:42:36.135][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:42:36.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.139][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.141][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:42:36.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:42:36.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.150][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:42:36.153][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:42:36.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.157][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:42:36.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:42:36.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.170][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:42:36.172][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:42:36.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.177][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:42:36.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:42:36.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.190][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:42:36.193][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:42:36.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.198][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:42:36.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:42:36.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.212][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:36.215][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:36.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.220][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.222][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:36.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:36.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.235][ef$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:36.238][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:36.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.243][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.246][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:36.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:36.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.256][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:42:36.259][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:42:36.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.263][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.266][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:42:36.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:42:36.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.275][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-09-26 00:42:36.278][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:42:36.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.283][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.286][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-09-26 00:42:36.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:42:36.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:36.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:36.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:36.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:36.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:36.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:36.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.331][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:42:36.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:42:36.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.341][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:42:36.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:42:36.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.350][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:42:36.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:42:36.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.359][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:42:36.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:42:36.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.367][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:42:36.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:42:36.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.376][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:42:36.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:42:36.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:42:36.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:42:36.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:42:36.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:42:36.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:42:36.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:42:36.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:42:36.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:42:36.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:42:36.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:42:36.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:42:36.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:42:36.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:42:36.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:42:36.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:42:36.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:42:36.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:42:36.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:42:36.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:42:36.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:42:36.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:42:36.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:42:36.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:42:36.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:42:36.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 00:42:36.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:42:36.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 00:42:36.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:42:36.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 00:42:36.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:42:36.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.525][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:36.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:36.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.534][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:36.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:36.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.546][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:36.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:36.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.557][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:42:36.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:42:36.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.570][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:42:36.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:42:36.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.588][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:42:36.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:42:36.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:42:36.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:42:36.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:42:36.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:42:36.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:42:36.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:42:36.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:42:36.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:42:36.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.634][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:42:36.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:42:36.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:42:36.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:42:36.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.654][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:42:36.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:42:36.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.663][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:42:36.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:42:36.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.672][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:42:36.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:42:36.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:42:36.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:42:36.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:42:36.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:42:36.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:42:36.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:42:36.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.711][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:36.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:36.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.720][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:36.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:36.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.730][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:36.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:36.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.739][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:42:36.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:42:36.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.748][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:42:36.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:42:36.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.757][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:42:36.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:42:36.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.767][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:36.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:36.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.776][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:36.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:36.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.784][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:36.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:36.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.793][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:42:36.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:42:36.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.802][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:42:36.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:42:36.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.811][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:42:36.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:42:36.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.828][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-09-26 00:42:36.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:42:36.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:42:36.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:42:36.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:42:36.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:42:36.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:42:36.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:42:36.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.867][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-09-26 00:42:36.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:42:36.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:36.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:36.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.886][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:36.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:36.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.894][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:36.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:36.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.904][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:36.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:36.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.914][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:36.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:36.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.924][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:42:36.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:42:36.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.935][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:42:36.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:42:36.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:36.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:36.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.955][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:42:36.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:42:36.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:36.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:36.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:36.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:36.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:36.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:36.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:36.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:36.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:36.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:37.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:37.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:37.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:37.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:37.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:37.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:37.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:37.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:37.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:37.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 00:42:37.023][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-09-26 00:42:37.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:37.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:37.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:37.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:37.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:37.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:37.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:37.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:37.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:37.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:37.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:37.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-09-26 00:42:37.066][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-09-26 00:42:37.069][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-09-26 00:42:37.072][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-09-26 00:42:37.083][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-09-26 00:42:37.085][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:37.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:37.089][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:37.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:37.095][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-09-26 00:42:37.106][biodb::testContext]
biodb.INFO [2025-09-26 00:42:37.109][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-26 00:42:37.111][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-09-26 00:42:37.114][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-26 00:42:37.116][biodb::testContext]
biodb.INFO [2025-09-26 00:42:37.126][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-09-26 00:42:37.130][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-09-26 00:42:37.138][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-26 00:42:37.141][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-09-26 00:42:37.143][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-09-26 00:42:37.146][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.153][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-09-26 00:42:37.156][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-09-26 00:42:37.160][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.167][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-09-26 00:42:37.170][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-09-26 00:42:37.172][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.178][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-09-26 00:42:37.181][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-09-26 00:42:37.183][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-09-26 00:42:37.185][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.192][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-09-26 00:42:37.194][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-09-26 00:42:37.197][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-09-26 00:42:37.199][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.206][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-09-26 00:42:37.209][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-09-26 00:42:37.211][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.217][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-09-26 00:42:37.219][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-09-26 00:42:37.222][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-09-26 00:42:37.224][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.231][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-09-26 00:42:37.233][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-09-26 00:42:37.235][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.242][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-09-26 00:42:37.244][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-09-26 00:42:37.247][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-09-26 00:42:37.249][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.256][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-09-26 00:42:37.259][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-09-26 00:42:37.261][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-09-26 00:42:37.265][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-09-26 00:42:37.267][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-09-26 00:42:37.272][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-09-26 00:42:37.274][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.280][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-09-26 00:42:37.283][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-09-26 00:42:37.286][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.293][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-09-26 00:42:37.295][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-09-26 00:42:37.298][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.305][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-09-26 00:42:37.308][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-09-26 00:42:37.311][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.317][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-09-26 00:42:37.320][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-09-26 00:42:37.323][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.330][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-09-26 00:42:37.332][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-09-26 00:42:37.335][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.342][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-09-26 00:42:37.344][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-09-26 00:42:37.375][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-09-26 00:42:37.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.399][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-09-26 00:42:37.402][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-09-26 00:42:37.404][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-09-26 00:42:37.406][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.413][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-09-26 00:42:37.417][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-26 00:42:37.420][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-09-26 00:42:37.423][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:37.425][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-26 00:42:37.427][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:37.430][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-26 00:42:37.432][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-26 00:42:37.435][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-26 00:42:37.437][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-26 00:42:37.440][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-26 00:42:37.443][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:37.445][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-09-26 00:42:37.450][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-26 00:42:37.452][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-26 00:42:37.455][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:37.457][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-26 00:42:37.457][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-26 00:42:37.457][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-26 00:42:37.457][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-26 00:42:37.457][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-26 00:42:37.460][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-26 00:42:37.463][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 00:42:37.465][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 00:42:37.467][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-26 00:42:37.470][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 00:42:37.472][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 00:42:37.475][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-26 00:42:37.477][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-26 00:42:37.480][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 00:42:37.482][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 00:42:37.484][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-26 00:42:37.487][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-26 00:42:37.490][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-09-26 00:42:37.495][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-26 00:42:37.497][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-09-26 00:42:37.500][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:37.502][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-26 00:42:37.505][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:37.507][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-26 00:42:37.512][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-26 00:42:37.514][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-26 00:42:37.517][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-26 00:42:37.520][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-26 00:42:37.522][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:37.525][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-09-26 00:42:37.527][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-26 00:42:37.530][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-26 00:42:37.533][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:37.535][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-26 00:42:37.535][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-26 00:42:37.535][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-26 00:42:37.535][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-26 00:42:37.535][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-26 00:42:37.538][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-26 00:42:37.540][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 00:42:37.542][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 00:42:37.545][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-26 00:42:37.547][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 00:42:37.549][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 00:42:37.551][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-26 00:42:37.553][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-26 00:42:37.556][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 00:42:37.558][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 00:42:37.560][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-26 00:42:37.563][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-26 00:42:37.565][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-09-26 00:42:37.570][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:37.572][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-09-26 00:42:37.574][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:37.577][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-26 00:42:37.579][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:37.581][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-26 00:42:37.584][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-26 00:42:37.586][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-26 00:42:37.588][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-26 00:42:37.591][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-26 00:42:37.593][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-26 00:42:37.594][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-09-26 00:42:37.597][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-26 00:42:37.599][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-26 00:42:37.601][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:37.603][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-26 00:42:37.606][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-26 00:42:37.608][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 00:42:37.610][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 00:42:37.612][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-26 00:42:37.613][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 00:42:37.615][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 00:42:37.617][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-26 00:42:37.620][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-26 00:42:37.622][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 00:42:37.624][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 00:42:37.626][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-26 00:42:37.628][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-26 00:42:37.631][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-09-26 00:42:37.643][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:37.646][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-09-26 00:42:37.648][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:37.651][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-26 00:42:37.653][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:37.656][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-26 00:42:37.659][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-26 00:42:37.661][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-26 00:42:37.664][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-26 00:42:37.666][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-26 00:42:37.668][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-26 00:42:37.671][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-09-26 00:42:37.673][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-26 00:42:37.675][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-26 00:42:37.678][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:37.680][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-26 00:42:37.682][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-26 00:42:37.685][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 00:42:37.687][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 00:42:37.689][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-26 00:42:37.691][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 00:42:37.693][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 00:42:37.696][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-26 00:42:37.698][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-26 00:42:37.701][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 00:42:37.703][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 00:42:37.705][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-26 00:42:37.708][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-26 00:42:37.711][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-26 00:42:37.713][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.718][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:37.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:37.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.730][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:37.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:37.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.741][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:37.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:37.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.752][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:37.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:37.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:37.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:37.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.774][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:37.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:37.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.787][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:37.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:37.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:37.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:37.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.811][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:37.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:37.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.823][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:37.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:37.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:37.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:37.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.847][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:37.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:37.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:37.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:37.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.874][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:37.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:37.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.886][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:37.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:37.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:37.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:37.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.915][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:37.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:37.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:37.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:37.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:37.925][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-09-26 00:42:37.928][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-09-26 00:42:37.931][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-09-26 00:42:37.934][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-09-26 00:42:37.937][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-09-26 00:42:37.940][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-09-26 00:42:37.943][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-09-26 00:42:37.947][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-09-26 00:42:37.950][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-09-26 00:42:37.953][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-09-26 00:42:37.956][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-26 00:42:37.959][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-09-26 00:42:37.963][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-09-26 00:42:37.966][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-09-26 00:42:37.969][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-09-26 00:42:37.973][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-09-26 00:42:37.977][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-09-26 00:42:37.981][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-09-26 00:42:37.985][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-09-26 00:42:37.989][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-09-26 00:42:37.993][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-09-26 00:42:37.997][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-09-26 00:42:38.000][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-09-26 00:42:38.004][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-09-26 00:42:38.008][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-09-26 00:42:38.013][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-09-26 00:42:38.018][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-09-26 00:42:38.021][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-09-26 00:42:38.026][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-09-26 00:42:38.030][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-09-26 00:42:38.033][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-09-26 00:42:38.036][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-09-26 00:42:38.040][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-09-26 00:42:38.043][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-09-26 00:42:38.046][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-09-26 00:42:38.050][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-09-26 00:42:38.053][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-09-26 00:42:38.056][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-09-26 00:42:38.060][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-09-26 00:42:38.064][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-09-26 00:42:38.067][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-09-26 00:42:38.071][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-09-26 00:42:38.075][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-09-26 00:42:38.080][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-09-26 00:42:38.084][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-09-26 00:42:38.088][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-09-26 00:42:38.094][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-09-26 00:42:38.098][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-09-26 00:42:38.102][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-09-26 00:42:38.105][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-09-26 00:42:38.109][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-09-26 00:42:38.112][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-09-26 00:42:38.116][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-09-26 00:42:38.120][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-09-26 00:42:38.125][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-09-26 00:42:38.130][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-09-26 00:42:38.133][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-09-26 00:42:38.138][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-09-26 00:42:38.141][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-09-26 00:42:38.144][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-09-26 00:42:38.149][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-09-26 00:42:38.152][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-09-26 00:42:38.156][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-09-26 00:42:38.169][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-09-26 00:42:38.173][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-09-26 00:42:38.177][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-09-26 00:42:38.181][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-09-26 00:42:38.184][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-09-26 00:42:38.188][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-09-26 00:42:38.192][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-09-26 00:42:38.196][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-09-26 00:42:38.200][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-09-26 00:42:38.203][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-09-26 00:42:38.206][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-09-26 00:42:38.210][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-09-26 00:42:38.214][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-09-26 00:42:38.217][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-09-26 00:42:38.221][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-09-26 00:42:38.224][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-09-26 00:42:38.228][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-09-26 00:42:38.232][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-09-26 00:42:38.236][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-09-26 00:42:38.240][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-09-26 00:42:38.245][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-09-26 00:42:38.250][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-09-26 00:42:38.252][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-26 00:42:38.254][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:38.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:38.259][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:38.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:38.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:38.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:38.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:38.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:38.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:38.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:38.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:38.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:38.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:38.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:38.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:38.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:38.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:38.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:38.293][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:38.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:38.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:38.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:38.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:38.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:38.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:38.309][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:38.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:38.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:38.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:38.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:38.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:38.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:38.322][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:38.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:38.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:38.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:38.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:38.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:38.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:38.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:38.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:38.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:38.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:38.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:38.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:38.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:38.345][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:38.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:38.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:38.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:38.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:38.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:38.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:38.361][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:38.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:38.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:38.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:38.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:38.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:38.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:38.375][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:38.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:38.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:38.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:38.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:38.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:38.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:38.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:38.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:38.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:38.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:38.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:38.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:38.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:38.417][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:38.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:38.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:38.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:38.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:38.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:38.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:38.432][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:38.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:38.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:38.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:38.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:38.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:38.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:38.446][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:38.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:38.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:38.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:38.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:38.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:38.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:38.461][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:38.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:38.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:38.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:38.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:38.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:38.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:38.476][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:38.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:38.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:38.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:38.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:38.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:38.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:38.496][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:38.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:38.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:38.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:38.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:38.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:38.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:38.512][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 00:42:38.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:38.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:38.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:38.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:38.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:38.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:38.531][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-09-26 00:42:38.535][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-09-26 00:42:38.540][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-26 00:42:38.543][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-09-26 00:42:38.548][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:38.551][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-26 00:42:38.553][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-09-26 00:42:38.556][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-09-26 00:42:38.558][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:38.561][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-26 00:42:38.564][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-09-26 00:42:38.566][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-26 00:42:38.569][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:38.572][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-09-26 00:42:38.575][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-26 00:42:38.577][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-09-26 00:42:38.577][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-09-26 00:42:38.577][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-09-26 00:42:38.577][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-09-26 00:42:38.577][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-09-26 00:42:38.577][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-09-26 00:42:38.577][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-09-26 00:42:38.577][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-09-26 00:42:38.577][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-09-26 00:42:38.577][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-09-26 00:42:38.577][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-09-26 00:42:38.577][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-09-26 00:42:38.577][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-09-26 00:42:38.577][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-09-26 00:42:38.577][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-09-26 00:42:38.577][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-09-26 00:42:38.577][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-09-26 00:42:38.577][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-09-26 00:42:38.580][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-09-26 00:42:38.583][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-26 00:42:38.583][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-09-26 00:42:38.583][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-09-26 00:42:38.586][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-09-26 00:42:38.588][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 00:42:38.591][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 00:42:38.593][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-26 00:42:38.596][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 00:42:38.598][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 00:42:38.600][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-26 00:42:38.603][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-09-26 00:42:38.603][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-09-26 00:42:38.605][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 00:42:38.607][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 00:42:38.610][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-09-26 00:42:38.612][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-26 00:42:38.618][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-09-26 00:42:38.622][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-09-26 00:42:38.626][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-09-26 00:42:38.630][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-26 00:42:38.634][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-09-26 00:42:38.641][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-09-26 00:42:38.644][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-09-26 00:42:38.647][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-09-26 00:42:38.651][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-09-26 00:42:38.654][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-26 00:42:38.656][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-26 00:42:38.659][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-09-26 00:42:38.661][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-09-26 00:42:38.665][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-09-26 00:42:38.665][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-09-26 00:42:38.667][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 00:42:38.678][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 00:42:38.680][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-09-26 00:42:38.683][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-09-26 00:42:38.685][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-09-26 00:42:38.689][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-09-26 00:42:38.692][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-26 00:42:38.694][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-26 00:42:38.697][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-09-26 00:42:38.700][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-26 00:42:38.702][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-09-26 00:42:38.705][biodb::testThat]
biodb.INFO [2025-09-26 00:42:38.707][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2025-09-26 00:42:38.709][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 00:42:38.712][biodb::testThat]
biodb.DEBUG[2025-09-26 00:42:38.716][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-09-26 00:42:38.718][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-09-26 00:42:38.720][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-09-26 00:42:38.727][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:42:38.730][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:42:38.734][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-09-26 00:42:38.737][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:42:38.740][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-09-26 00:42:38.743][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-09-26 00:42:38.745][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-09-26 00:42:38.748][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-09-26 00:42:38.750][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-09-26 00:42:38.753][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-09-26 00:42:38.755][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-09-26 00:42:38.761][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-09-26 00:42:38.764][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-09-26 00:42:38.768][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:42:38.773][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-09-26 00:42:38.779][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-09-26 00:42:38.783][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-09-26 00:42:38.787][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-09-26 00:42:38.791][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-09-26 00:42:38.794][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-09-26 00:42:38.797][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-09-26 00:42:38.801][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-26 00:42:38.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:38.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:38.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:38.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:38.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:38.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-26 00:42:38.831][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:38.834][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:38.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:38.841][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:38.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:38.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:38.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:38.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:38.854][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:38.857][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:38.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:38.861][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:38.865][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:38.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:38.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:38.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:38.879][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:42:38.882][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:42:38.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:38.887][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:38.891][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:42:38.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:42:38.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:38.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:38.902][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:42:38.904][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:42:38.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:38.909][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:38.912][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:42:38.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:42:38.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:38.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:38.921][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:42:38.924][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:42:38.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:38.928][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:38.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:42:38.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:42:38.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:38.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:38.939][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:42:38.950][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:42:38.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:38.955][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:38.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:42:38.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:42:38.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:38.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:38.968][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:42:38.971][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:42:38.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:38.975][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:38.978][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:42:38.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:42:38.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:38.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:38.987][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:42:38.990][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:42:38.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:38.994][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:38.997][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:42:39.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:42:39.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.006][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:42:39.009][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:42:39.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.014][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:42:39.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:42:39.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.027][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:42:39.029][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:42:39.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.034][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:42:39.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:42:39.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.046][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:42:39.049][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:42:39.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.053][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.056][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:42:39.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:42:39.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.065][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:42:39.068][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:42:39.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.072][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:42:39.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:42:39.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.085][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:42:39.087][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:42:39.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.092][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.094][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:42:39.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:42:39.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.104][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:42:39.106][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:42:39.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.111][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:42:39.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:42:39.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.123][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:39.126][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:39.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.130][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.133][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:39.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:39.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.142][ef$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:39.144][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:39.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.149][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.152][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:39.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:39.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.161][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:42:39.163][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:42:39.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.168][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.170][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:42:39.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:42:39.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.180][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-09-26 00:42:39.195][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:42:39.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.200][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.203][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-09-26 00:42:39.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:42:39.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:39.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:39.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:39.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:39.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:39.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:39.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.240][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:42:39.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:42:39.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.249][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:42:39.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:42:39.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.260][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:42:39.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:42:39.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.269][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:42:39.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:42:39.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.279][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:42:39.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:42:39.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.289][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:42:39.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:42:39.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:42:39.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:42:39.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:42:39.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:42:39.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:42:39.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:42:39.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:42:39.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:42:39.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:42:39.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:42:39.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:42:39.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:42:39.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:42:39.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:42:39.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:42:39.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:42:39.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:42:39.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:42:39.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.376][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:42:39.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:42:39.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:42:39.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:42:39.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.395][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:42:39.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:42:39.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.404][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 00:42:39.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:42:39.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 00:42:39.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:42:39.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 00:42:39.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:42:39.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.440][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:39.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:39.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.450][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:39.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:39.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.461][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:39.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:39.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.471][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:42:39.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:42:39.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.480][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:42:39.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:42:39.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.490][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:42:39.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:42:39.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:42:39.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:42:39.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:42:39.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:42:39.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:42:39.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:42:39.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:42:39.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:42:39.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:42:39.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:42:39.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:42:39.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:42:39.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.558][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:42:39.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:42:39.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.568][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:42:39.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:42:39.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.579][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:42:39.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:42:39.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:42:39.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:42:39.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:42:39.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:42:39.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:42:39.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:42:39.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.620][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:39.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:39.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.629][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:39.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:39.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.639][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:39.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:39.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:42:39.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:42:39.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.659][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:42:39.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:42:39.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.668][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:42:39.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:42:39.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.679][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:39.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:39.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.689][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:39.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:39.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.708][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:39.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:39.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.719][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:42:39.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:42:39.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.757][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:42:39.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:42:39.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.767][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:42:39.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:42:39.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.777][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-09-26 00:42:39.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:42:39.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:42:39.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:42:39.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.795][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:42:39.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:42:39.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:42:39.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:42:39.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.814][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-09-26 00:42:39.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:42:39.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.826][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:39.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:39.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.836][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:39.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:39.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.846][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:39.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:39.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.858][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:39.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:39.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.870][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:39.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:39.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.882][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:42:39.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:42:39.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.891][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:42:39.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:42:39.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:39.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:39.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.910][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:42:39.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:42:39.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:39.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:39.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:39.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:39.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:39.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:39.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:39.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:39.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:39.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:39.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:39.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:39.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 00:42:39.975][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-09-26 00:42:39.978][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:39.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:39.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:39.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:39.996][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:39.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:40.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.005][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:40.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:40.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.011][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:40.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:40.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 00:42:40.021][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-09-26 00:42:40.023][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-09-26 00:42:40.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-26 00:42:40.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:40.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:40.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:40.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:40.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:40.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:40.052][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-09-26 00:42:40.054][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-09-26 00:42:40.058][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:42:40.063][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-09-26 00:42:40.069][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-09-26 00:42:40.072][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-09-26 00:42:40.075][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-09-26 00:42:40.078][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-09-26 00:42:40.081][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-09-26 00:42:40.084][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-09-26 00:42:40.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-26 00:42:40.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:40.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:40.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:40.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:40.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:40.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-26 00:42:40.114][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:40.117][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:40.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.122][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:40.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:40.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.135][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:40.137][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:40.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.141][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.143][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:40.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:40.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.152][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:42:40.155][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:42:40.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.160][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.162][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:42:40.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:42:40.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.171][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:42:40.173][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:42:40.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.177][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.180][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:42:40.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:42:40.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.190][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:42:40.193][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:42:40.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.197][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:42:40.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:42:40.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.210][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:42:40.213][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:42:40.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.217][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:42:40.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:42:40.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.229][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:42:40.232][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:42:40.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.236][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.246][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:42:40.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:42:40.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.256][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:42:40.258][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:42:40.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.263][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.266][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:42:40.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:42:40.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.275][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:42:40.277][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:42:40.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.281][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:42:40.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:42:40.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.294][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:42:40.296][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:42:40.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.300][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:42:40.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:42:40.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.312][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:42:40.315][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:42:40.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.319][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.322][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:42:40.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:42:40.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.331][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:42:40.334][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:42:40.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.338][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:42:40.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:42:40.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.351][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:42:40.354][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:42:40.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.358][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.361][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:42:40.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:42:40.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.370][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:42:40.373][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:42:40.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.377][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:42:40.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:42:40.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.388][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:40.390][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:40.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.394][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.397][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:40.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:40.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.406][ef$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:40.408][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:40.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.412][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.415][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:40.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:40.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.424][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:42:40.427][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:42:40.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.431][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.434][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:42:40.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:42:40.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.444][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-09-26 00:42:40.446][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:42:40.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.450][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.453][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-09-26 00:42:40.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:42:40.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:40.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:40.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:40.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:40.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:40.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:40.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.502][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:42:40.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:42:40.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.512][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:42:40.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:42:40.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.522][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 00:42:40.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 00:42:40.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.532][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:42:40.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:42:40.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.541][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:42:40.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:42:40.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.551][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 00:42:40.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 00:42:40.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:42:40.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:42:40.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:42:40.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:42:40.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 00:42:40.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 00:42:40.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:42:40.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:42:40.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:42:40.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:42:40.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 00:42:40.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 00:42:40.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:42:40.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:42:40.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:42:40.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:42:40.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:42:40.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 00:42:40.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.649][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:42:40.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:42:40.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:42:40.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:42:40.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:42:40.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 00:42:40.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 00:42:40.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:42:40.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 00:42:40.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:42:40.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 00:42:40.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 00:42:40.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.703][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:40.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:40.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.712][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:40.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:40.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.722][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:40.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:40.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.732][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:42:40.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:42:40.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.750][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:42:40.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:42:40.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.760][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 00:42:40.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 00:42:40.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.768][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:42:40.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:42:40.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.777][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:42:40.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:42:40.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 00:42:40.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 00:42:40.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.795][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:42:40.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:42:40.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:42:40.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:42:40.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.815][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:42:40.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:42:40.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.825][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:42:40.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:42:40.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.835][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:42:40.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:42:40.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.845][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:42:40.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 00:42:40.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:42:40.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:42:40.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:42:40.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:42:40.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:42:40.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 00:42:40.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.887][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:40.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:40.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.897][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:40.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:40.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.906][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:40.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:40.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.915][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:42:40.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:42:40.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.925][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:42:40.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:42:40.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:42:40.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 00:42:40.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.944][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:40.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:40.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.955][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:40.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:40.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.965][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:40.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 00:42:40.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.975][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:42:40.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:42:40.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:40.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:40.985][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:42:40.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:42:40.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.003][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 00:42:41.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 00:42:41.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.013][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-09-26 00:42:41.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:42:41.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:42:41.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:42:41.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.032][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:42:41.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:42:41.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.042][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 00:42:41.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:42:41.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.052][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-09-26 00:42:41.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 00:42:41.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.064][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:41.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:41.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.073][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:41.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:41.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.082][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:41.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:41.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.090][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:41.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:41.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.099][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 00:42:41.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 00:42:41.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.109][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:42:41.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:42:41.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.119][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:42:41.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:42:41.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:41.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:41.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.136][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:42:41.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 00:42:41.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:41.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:41.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:41.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:41.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:41.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:41.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:41.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:41.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:41.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:41.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 00:42:41.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 00:42:41.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 00:42:41.198][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-09-26 00:42:41.201][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.209][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.217][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.225][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 00:42:41.241][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-09-26 00:42:41.243][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-09-26 00:42:41.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-26 00:42:41.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:41.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:41.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:41.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:41.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:41.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:41.279][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-09-26 00:42:41.281][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-09-26 00:42:41.284][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-09-26 00:42:41.288][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:42:41.291][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:42:41.294][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-09-26 00:42:41.298][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:42:41.300][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-09-26 00:42:41.303][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-09-26 00:42:41.305][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-09-26 00:42:41.307][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-09-26 00:42:41.309][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-09-26 00:42:41.312][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-09-26 00:42:41.315][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-09-26 00:42:41.319][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.330][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.340][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.350][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.360][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.370][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.379][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 00:42:41.389][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-09-26 00:42:41.390][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-09-26 00:42:41.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-26 00:42:41.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:41.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:41.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:41.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:41.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:41.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-26 00:42:41.415][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.424][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.433][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.439][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.448][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.457][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.467][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 00:42:41.484][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-09-26 00:42:41.486][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-09-26 00:42:41.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-26 00:42:41.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:41.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:41.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:41.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:41.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:41.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 00:42:41.522][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-09-26 00:42:41.524][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-09-26 00:42:41.526][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-09-26 00:42:41.530][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:42:41.533][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:42:41.536][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-09-26 00:42:41.539][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 00:42:41.542][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-09-26 00:42:41.544][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-09-26 00:42:41.547][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-09-26 00:42:41.549][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-09-26 00:42:41.551][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-09-26 00:42:41.553][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-09-26 00:42:41.555][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-09-26 00:42:41.559][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.569][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.579][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.588][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.597][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.606][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.615][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 00:42:41.662][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-09-26 00:42:41.665][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-09-26 00:42:41.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-26 00:42:41.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:41.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:41.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:41.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:41.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:41.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-26 00:42:41.714][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.723][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.730][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.740][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.749][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.758][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 00:42:41.767][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 00:42:41.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 00:42:41.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 00:42:41.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 00:42:41.776][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-09-26 00:42:41.779][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-09-26 00:42:41.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-26 00:42:41.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:41.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:41.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:41.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:41.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:41.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-09-26 00:42:41.827][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-09-26 00:42:41.830][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-09-26 00:42:41.832][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-09-26 00:42:41.834][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-09-26 00:42:41.836][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 00:42:41.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 00:42:41.840][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 00:42:41.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 00:42:41.844][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 00:42:41.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
 20.103   0.985  56.166 

Example timings