Multiple platform build/check report for BioC 3.21 - BUILD results for MsDataHub on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4824
merida1	macOS 12.7.5 Monterey	x86_64	4.5.1 RC (2025-06-05 r88288) -- "Great Square Root"	4606
kjohnson1	macOS 13.6.6 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4547
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4579
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for MsDataHub on nebbiolo1

To the developers/maintainers of the MsDataHub package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MsDataHub.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: MsDataHub

Version: 1.8.0

Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MsDataHub

StartedAt: 2025-08-31 18:18:17 -0400 (Sun, 31 Aug 2025)

EndedAt: 2025-08-31 18:18:51 -0400 (Sun, 31 Aug 2025)

EllapsedTime: 34.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MsDataHub
###
##############################################################################
##############################################################################


* checking for file ‘MsDataHub/DESCRIPTION’ ... OK
* preparing ‘MsDataHub’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MsDataHub.Rmd’ using rmarkdown

Quitting from MsDataHub.Rmd:64-68 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! BiocParallel errors
  1 remote errors, element index: 1
  0 unevaluated and other errors
  first remote error:
Error in substr(readBin(x, character(), n = 1), 1, 3): invalid multibyte string at '<fd>7zXZ'
---
Backtrace:
     ▆
  1. ├─Spectra::Spectra(f)
  2. └─Spectra::Spectra(f)
  3.   └─Spectra (local) .local(object, ...)
  4.     └─Spectra:::.create_spectra(...)
  5.       ├─ProtGenerics::backendInitialize(...)
  6.       └─Spectra::backendInitialize(...)
  7.         └─Spectra (local) .local(object, ...)
  8.           ├─base::do.call(...)
  9.           ├─BiocParallel::bplapply(...)
 10.           └─BiocParallel::bplapply(...)
 11.             └─BiocParallel:::.bpinit(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'MsDataHub.Rmd' failed with diagnostics:
BiocParallel errors
  1 remote errors, element index: 1
  0 unevaluated and other errors
  first remote error:
Error in substr(readBin(x, character(), n = 1), 1, 3): invalid multibyte string at '<fd>7zXZ'

--- failed re-building ‘MsDataHub.Rmd’

SUMMARY: processing the following file failed:
  ‘MsDataHub.Rmd’

Error: Vignette re-building failed.
Execution halted