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This page was generated on 2025-09-01 11:39 -0400 (Mon, 01 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4824
merida1macOS 12.7.5 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4606
kjohnson1macOS 13.6.6 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4547
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4579
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 123/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BadRegionFinder 1.36.0  (landing page)
Sarah Sandmann
Snapshot Date: 2025-08-28 13:40 -0400 (Thu, 28 Aug 2025)
git_url: https://git.bioconductor.org/packages/BadRegionFinder
git_branch: RELEASE_3_21
git_last_commit: 0f424a2
git_last_commit_date: 2025-04-15 11:00:36 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  

BUILD results for BadRegionFinder on merida1

To the developers/maintainers of the BadRegionFinder package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BadRegionFinder.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: BadRegionFinder
Version: 1.36.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BadRegionFinder
StartedAt: 2025-08-28 17:05:01 -0400 (Thu, 28 Aug 2025)
EndedAt: 2025-08-28 17:07:56 -0400 (Thu, 28 Aug 2025)
EllapsedTime: 175.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BadRegionFinder
###
##############################################################################
##############################################################################


* checking for file ‘BadRegionFinder/DESCRIPTION’ ... OK
* preparing ‘BadRegionFinder’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘BadRegionFinder.Rnw’ using Sweave
Determine Coverage
Sample Test2_454
Sample Test2_ion
Determine target bases
Combine Information
Chromosome: 1
Chromosome: 2
Chromosome: 3
Chromosome: 4
Chromosome: 5
Chromosome: 6
Chromosome: 7
Chromosome: 8
Chromosome: 9
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Chromosome: 11
Chromosome: 12
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Chromosome: 15
Chromosome: 16
Chromosome: 17
Chromosome: 18
Chromosome: 19
Chromosome: 20
Chromosome: 21
Chromosome: 22
Chromosome: X
Chromosome: Y
Chromosome: MT
Analyzing Chromosome 1
Analyzing Chromosome 2
Analyzing Chromosome 3
Analyzing Chromosome 4
Analyzing Chromosome 5
Analyzing Chromosome 6
Analyzing Chromosome 7
Analyzing Chromosome 8
Analyzing Chromosome 9
Analyzing Chromosome 10
Analyzing Chromosome 11
Analyzing Chromosome 12
Analyzing Chromosome 13
Analyzing Chromosome 14
Analyzing Chromosome 15
Analyzing Chromosome 16
Analyzing Chromosome 17
Analyzing Chromosome 18
Analyzing Chromosome 19
Analyzing Chromosome 20
Analyzing Chromosome 21
Analyzing Chromosome 22
Analyzing Chromosome 23
Analyzing Chromosome 24
Analyzing Chromosome 25
Analyze Chromosome 1
Analyze Chromosome 2
Analyze Chromosome 3
Analyze Chromosome 4
Analyze Chromosome 5
Analyze Chromosome 6
Analyze Chromosome 7
Analyze Chromosome 8
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Analyze Chromosome 10
Analyze Chromosome 11
Analyze Chromosome 12
Analyze Chromosome 13
Analyze Chromosome 14
Analyze Chromosome 15
Analyze Chromosome 16
Analyze Chromosome 17
Analyze Chromosome 18
Analyze Chromosome 19
Analyze Chromosome 20
Analyze Chromosome 21
Analyze Chromosome 22
Analyze Chromosome 23
Analyze Chromosome 24
Analyze Chromosome 25
Analyzing Chromosome 1
Analyzing Chromosome 2
Analyzing Chromosome 3
Analyzing Chromosome 4
Analyzing Chromosome 5
Analyzing Chromosome 6
Analyzing Chromosome 7
Analyzing Chromosome 8
Analyzing Chromosome 9
Analyzing Chromosome 10
Analyzing Chromosome 11
Analyzing Chromosome 12
Analyzing Chromosome 13
Analyzing Chromosome 14
Analyzing Chromosome 15
Analyzing Chromosome 16
Analyzing Chromosome 17
Analyzing Chromosome 18
Analyzing Chromosome 19
Analyzing Chromosome 20
Analyzing Chromosome 21
Analyzing Chromosome 22
Analyzing Chromosome 23
Analyzing Chromosome 24
Analyzing Chromosome 25
Analyzing Chromosome 1
Analyzing Chromosome 2

Error: processing vignette 'BadRegionFinder.Rnw' failed with diagnostics:
 chunk 12 (label = 12) 
Error in .getAttributes(mart, verbose = verbose) : 
  biomaRt error: looks like we're connecting to incompatible version of BioMart.

--- failed re-building ‘BadRegionFinder.Rnw’

SUMMARY: processing the following file failed:
  ‘BadRegionFinder.Rnw’

Error: Vignette re-building failed.
Execution halted