Luke Zappia
| Snapshot Date: 2024-11-19 13:40 -0500 (Tue, 19 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/zellkonverter |
| git_branch: RELEASE_3_20 |
| git_last_commit: d492566 |
| git_last_commit_date: 2024-10-29 10:49:36 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-11-20 12:03 -0500 (Wed, 20 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4481 |
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4479 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4359 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2283/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| zellkonverter 1.16.0 (landing page) Luke Zappia
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | ERROR | ||||||||||
|
To the developers/maintainers of the zellkonverter package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/zellkonverter.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: zellkonverter |
| Version: 1.16.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:zellkonverter.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings zellkonverter_1.16.0.tar.gz |
| StartedAt: 2024-11-20 11:23:48 -0500 (Wed, 20 Nov 2024) |
| EndedAt: 2024-11-20 11:35:27 -0500 (Wed, 20 Nov 2024) |
| EllapsedTime: 698.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: zellkonverter.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:zellkonverter.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings zellkonverter_1.16.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/meat/zellkonverter.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘zellkonverter/DESCRIPTION’ ... OK
* this is package ‘zellkonverter’ version ‘1.16.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘zellkonverter’ can be installed ... NOTE
Found the following notes/warnings:
Non-staged installation was used
See ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/meat/zellkonverter.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
AnnData-Conversion 17.068 1.953 22.955
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘spelling.R’
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/meat/zellkonverter.Rcheck/00check.log’
for details.
zellkonverter.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL zellkonverter ### ############################################################################## ############################################################################## * installing to library ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘zellkonverter’ ... ** using non-staged installation via StagedInstall field ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (zellkonverter)
zellkonverter.Rcheck/tests/spelling.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> if (requireNamespace("spelling", quietly = TRUE)) {
+ spelling::spell_check_test(
+ vignettes = TRUE,
+ error = FALSE,
+ skip_on_cran = TRUE
+ )
+ }
NULL
>
> proc.time()
user system elapsed
0.099 0.044 0.139
zellkonverter.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(zellkonverter)
Registered S3 method overwritten by 'zellkonverter':
method from
py_to_r.pandas.core.arrays.categorical.Categorical reticulate
>
> test_check("zellkonverter")
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /media/volume/teran2_disk/biocbuild/.cache/R/basilisk/1.18.0/zellkonverter/1.16.0/zellkonverterAnnDataEnv-0.10.6
added / updated specs:
- python=3.12.2
The following packages will be downloaded:
package | build
---------------------------|-----------------
python-3.12.2 |hab00c5b_0_cpython 30.8 MB conda-forge
------------------------------------------------------------
Total: 30.8 MB
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2
libexpat conda-forge/linux-64::libexpat-2.6.4-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.2.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.2.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.47.0-hadc24fc_1
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.4.0-hb9d3cd8_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/linux-64::python-3.12.2-hab00c5b_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.5.0-pyhff2d567_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.45.0-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /media/volume/teran2_disk/biocbuild/.cache/R/basilisk/1.18.0/zellkonverter/1.16.0/zellkonverterAnnDataEnv-0.10.6
added / updated specs:
- anndata=0.10.6
- h5py=3.10.0
- hdf5=1.14.3
- natsort=8.4.0
- numpy=1.26.4
- packaging=24.0
- pandas=2.2.1
- python[version='3.12.2.*,3.12.2.*']
- scipy=1.12.0
The following packages will be downloaded:
package | build
---------------------------|-----------------
anndata-0.10.6 | pyhd8ed1ab_0 96 KB conda-forge
h5py-3.10.0 |nompi_py312h1b477d7_101 1.2 MB conda-forge
numpy-1.26.4 | py312heda63a1_0 7.1 MB conda-forge
pandas-2.2.1 | py312hfb8ada1_0 14.7 MB conda-forge
scipy-1.12.0 | py312heda63a1_2 16.3 MB conda-forge
------------------------------------------------------------
Total: 39.4 MB
The following NEW packages will be INSTALLED:
anndata conda-forge/noarch::anndata-0.10.6-pyhd8ed1ab_0
array-api-compat conda-forge/noarch::array-api-compat-1.9.1-pyhd8ed1ab_0
c-ares conda-forge/linux-64::c-ares-1.34.3-heb4867d_0
cached-property conda-forge/noarch::cached-property-1.5.2-hd8ed1ab_1
cached_property conda-forge/noarch::cached_property-1.5.2-pyha770c72_1
exceptiongroup conda-forge/noarch::exceptiongroup-1.2.2-pyhd8ed1ab_0
h5py conda-forge/linux-64::h5py-3.10.0-nompi_py312h1b477d7_101
hdf5 conda-forge/linux-64::hdf5-1.14.3-nompi_hdf9ad27_105
keyutils conda-forge/linux-64::keyutils-1.6.1-h166bdaf_0
krb5 conda-forge/linux-64::krb5-1.21.3-h659f571_0
libaec conda-forge/linux-64::libaec-1.1.3-h59595ed_0
libblas conda-forge/linux-64::libblas-3.9.0-25_linux64_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-25_linux64_openblas
libcurl conda-forge/linux-64::libcurl-8.10.1-hbbe4b11_0
libedit conda-forge/linux-64::libedit-3.1.20191231-he28a2e2_2
libev conda-forge/linux-64::libev-4.33-hd590300_2
libgfortran conda-forge/linux-64::libgfortran-14.2.0-h69a702a_1
libgfortran-ng conda-forge/linux-64::libgfortran-ng-14.2.0-h69a702a_1
libgfortran5 conda-forge/linux-64::libgfortran5-14.2.0-hd5240d6_1
liblapack conda-forge/linux-64::liblapack-3.9.0-25_linux64_openblas
libnghttp2 conda-forge/linux-64::libnghttp2-1.64.0-h161d5f1_0
libopenblas conda-forge/linux-64::libopenblas-0.3.28-pthreads_h94d23a6_1
libssh2 conda-forge/linux-64::libssh2-1.11.0-h0841786_0
libstdcxx conda-forge/linux-64::libstdcxx-14.2.0-hc0a3c3a_1
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-14.2.0-h4852527_1
natsort conda-forge/noarch::natsort-8.4.0-pyhd8ed1ab_0
numpy conda-forge/linux-64::numpy-1.26.4-py312heda63a1_0
packaging conda-forge/noarch::packaging-24.0-pyhd8ed1ab_0
pandas conda-forge/linux-64::pandas-2.2.1-py312hfb8ada1_0
python-dateutil conda-forge/noarch::python-dateutil-2.9.0.post0-pyhff2d567_0
python-tzdata conda-forge/noarch::python-tzdata-2024.2-pyhd8ed1ab_0
python_abi conda-forge/linux-64::python_abi-3.12-5_cp312
pytz conda-forge/noarch::pytz-2024.2-pyhd8ed1ab_0
scipy conda-forge/linux-64::scipy-1.12.0-py312heda63a1_2
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
zstd conda-forge/linux-64::zstd-1.5.6-ha6fb4c9_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /media/volume/teran2_disk/biocbuild/.cache/R/basilisk/1.18.0/zellkonverter/1.16.0/zellkonverterAnnDataEnv-0.10.2
added / updated specs:
- python=3.11.5
The following packages will be downloaded:
package | build
---------------------------|-----------------
python-3.11.5 |hab00c5b_0_cpython 29.4 MB conda-forge
------------------------------------------------------------
Total: 29.4 MB
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2
libexpat conda-forge/linux-64::libexpat-2.6.4-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.2.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.2.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.47.0-hadc24fc_1
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.4.0-hb9d3cd8_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/linux-64::python-3.11.5-hab00c5b_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.5.0-pyhff2d567_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.45.0-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /media/volume/teran2_disk/biocbuild/.cache/R/basilisk/1.18.0/zellkonverter/1.16.0/zellkonverterAnnDataEnv-0.10.2
added / updated specs:
- anndata=0.10.2
- h5py=3.10.0
- hdf5=1.14.2
- natsort=8.4.0
- numpy=1.26.0
- packaging=23.2
- pandas=2.1.1
- python[version='3.11.5.*,3.11.5.*']
- scipy=1.11.3
The following packages will be downloaded:
package | build
---------------------------|-----------------
anndata-0.10.2 | pyhd8ed1ab_0 94 KB conda-forge
h5py-3.10.0 |nompi_py311h3839ddf_100 1.2 MB conda-forge
hdf5-1.14.2 |nompi_h4f84152_100 3.6 MB conda-forge
numpy-1.26.0 | py311h64a7726_0 7.7 MB conda-forge
pandas-2.1.1 | py311h320fe9a_1 14.2 MB conda-forge
scipy-1.11.3 | py311h64a7726_1 15.3 MB conda-forge
------------------------------------------------------------
Total: 42.0 MB
The following NEW packages will be INSTALLED:
anndata conda-forge/noarch::anndata-0.10.2-pyhd8ed1ab_0
array-api-compat conda-forge/noarch::array-api-compat-1.9.1-pyhd8ed1ab_0
c-ares conda-forge/linux-64::c-ares-1.34.3-heb4867d_0
cached-property conda-forge/noarch::cached-property-1.5.2-hd8ed1ab_1
cached_property conda-forge/noarch::cached_property-1.5.2-pyha770c72_1
exceptiongroup conda-forge/noarch::exceptiongroup-1.2.2-pyhd8ed1ab_0
h5py conda-forge/linux-64::h5py-3.10.0-nompi_py311h3839ddf_100
hdf5 conda-forge/linux-64::hdf5-1.14.2-nompi_h4f84152_100
keyutils conda-forge/linux-64::keyutils-1.6.1-h166bdaf_0
krb5 conda-forge/linux-64::krb5-1.21.3-h659f571_0
libaec conda-forge/linux-64::libaec-1.1.3-h59595ed_0
libblas conda-forge/linux-64::libblas-3.9.0-20_linux64_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-20_linux64_openblas
libcurl conda-forge/linux-64::libcurl-8.10.1-hbbe4b11_0
libedit conda-forge/linux-64::libedit-3.1.20191231-he28a2e2_2
libev conda-forge/linux-64::libev-4.33-hd590300_2
libgfortran conda-forge/linux-64::libgfortran-14.2.0-h69a702a_1
libgfortran-ng conda-forge/linux-64::libgfortran-ng-14.2.0-h69a702a_1
libgfortran5 conda-forge/linux-64::libgfortran5-14.2.0-hd5240d6_1
liblapack conda-forge/linux-64::liblapack-3.9.0-20_linux64_openblas
libnghttp2 conda-forge/linux-64::libnghttp2-1.64.0-h161d5f1_0
libopenblas conda-forge/linux-64::libopenblas-0.3.25-pthreads_h413a1c8_0
libssh2 conda-forge/linux-64::libssh2-1.11.0-h0841786_0
libstdcxx conda-forge/linux-64::libstdcxx-14.2.0-hc0a3c3a_1
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-14.2.0-h4852527_1
natsort conda-forge/noarch::natsort-8.4.0-pyhd8ed1ab_0
numpy conda-forge/linux-64::numpy-1.26.0-py311h64a7726_0
packaging conda-forge/noarch::packaging-23.2-pyhd8ed1ab_0
pandas conda-forge/linux-64::pandas-2.1.1-py311h320fe9a_1
python-dateutil conda-forge/noarch::python-dateutil-2.9.0.post0-pyhff2d567_0
python-tzdata conda-forge/noarch::python-tzdata-2024.2-pyhd8ed1ab_0
python_abi conda-forge/linux-64::python_abi-3.11-5_cp311
pytz conda-forge/noarch::pytz-2024.2-pyhd8ed1ab_0
scipy conda-forge/linux-64::scipy-1.11.3-py311h64a7726_1
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
zstd conda-forge/linux-64::zstd-1.5.6-ha6fb4c9_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /media/volume/teran2_disk/biocbuild/.cache/R/basilisk/1.18.0/zellkonverter/1.16.0/zellkonverterAnnDataEnv-0.9.2
added / updated specs:
- python=3.11.5
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2
libexpat conda-forge/linux-64::libexpat-2.6.4-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.2.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.2.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.47.0-hadc24fc_1
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.4.0-hb9d3cd8_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/linux-64::python-3.11.5-hab00c5b_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.5.0-pyhff2d567_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.45.0-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /media/volume/teran2_disk/biocbuild/.cache/R/basilisk/1.18.0/zellkonverter/1.16.0/zellkonverterAnnDataEnv-0.9.2
added / updated specs:
- anndata=0.9.2
- h5py=3.9.0
- hdf5=1.14.2
- natsort=8.4.0
- numpy=1.26.0
- packaging=23.2
- pandas=2.1.1
- python[version='3.11.5.*,3.11.5.*']
- scipy=1.11.3
The following packages will be downloaded:
package | build
---------------------------|-----------------
anndata-0.9.2 | pyhd8ed1ab_0 85 KB conda-forge
h5py-3.9.0 |nompi_py311h3839ddf_103 1.2 MB conda-forge
------------------------------------------------------------
Total: 1.3 MB
The following NEW packages will be INSTALLED:
anndata conda-forge/noarch::anndata-0.9.2-pyhd8ed1ab_0
c-ares conda-forge/linux-64::c-ares-1.34.3-heb4867d_0
cached-property conda-forge/noarch::cached-property-1.5.2-hd8ed1ab_1
cached_property conda-forge/noarch::cached_property-1.5.2-pyha770c72_1
h5py conda-forge/linux-64::h5py-3.9.0-nompi_py311h3839ddf_103
hdf5 conda-forge/linux-64::hdf5-1.14.2-nompi_h4f84152_100
keyutils conda-forge/linux-64::keyutils-1.6.1-h166bdaf_0
krb5 conda-forge/linux-64::krb5-1.21.3-h659f571_0
libaec conda-forge/linux-64::libaec-1.1.3-h59595ed_0
libblas conda-forge/linux-64::libblas-3.9.0-20_linux64_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-20_linux64_openblas
libcurl conda-forge/linux-64::libcurl-8.10.1-hbbe4b11_0
libedit conda-forge/linux-64::libedit-3.1.20191231-he28a2e2_2
libev conda-forge/linux-64::libev-4.33-hd590300_2
libgfortran conda-forge/linux-64::libgfortran-14.2.0-h69a702a_1
libgfortran-ng conda-forge/linux-64::libgfortran-ng-14.2.0-h69a702a_1
libgfortran5 conda-forge/linux-64::libgfortran5-14.2.0-hd5240d6_1
liblapack conda-forge/linux-64::liblapack-3.9.0-20_linux64_openblas
libnghttp2 conda-forge/linux-64::libnghttp2-1.64.0-h161d5f1_0
libopenblas conda-forge/linux-64::libopenblas-0.3.25-pthreads_h413a1c8_0
libssh2 conda-forge/linux-64::libssh2-1.11.0-h0841786_0
libstdcxx conda-forge/linux-64::libstdcxx-14.2.0-hc0a3c3a_1
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-14.2.0-h4852527_1
natsort conda-forge/noarch::natsort-8.4.0-pyhd8ed1ab_0
numpy conda-forge/linux-64::numpy-1.26.0-py311h64a7726_0
packaging conda-forge/noarch::packaging-23.2-pyhd8ed1ab_0
pandas conda-forge/linux-64::pandas-2.1.1-py311h320fe9a_1
python-dateutil conda-forge/noarch::python-dateutil-2.9.0.post0-pyhff2d567_0
python-tzdata conda-forge/noarch::python-tzdata-2024.2-pyhd8ed1ab_0
python_abi conda-forge/linux-64::python_abi-3.11-5_cp311
pytz conda-forge/noarch::pytz-2024.2-pyhd8ed1ab_0
scipy conda-forge/linux-64::scipy-1.11.3-py311h64a7726_1
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
zstd conda-forge/linux-64::zstd-1.5.6-ha6fb4c9_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /media/volume/teran2_disk/biocbuild/.cache/R/basilisk/1.18.0/zellkonverter/1.16.0/zellkonverterAnnDataEnv-0.8.0
added / updated specs:
- python=3.8.13
The following packages will be downloaded:
package | build
---------------------------|-----------------
python-3.8.13 |ha86cf86_0_cpython 25.2 MB conda-forge
------------------------------------------------------------
Total: 25.2 MB
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.2.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.2.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.47.0-hadc24fc_1
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.4.0-hb9d3cd8_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/linux-64::python-3.8.13-ha86cf86_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.3.0-pyhd8ed1ab_0
sqlite conda-forge/linux-64::sqlite-3.47.0-h9eae976_1
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
wheel conda-forge/noarch::wheel-0.45.0-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /media/volume/teran2_disk/biocbuild/.cache/R/basilisk/1.18.0/zellkonverter/1.16.0/zellkonverterAnnDataEnv-0.8.0
added / updated specs:
- python=3.8.13
The following packages will be downloaded:
package | build
---------------------------|-----------------
python-3.8.13 |h582c2e5_0_cpython 25.1 MB conda-forge
------------------------------------------------------------
Total: 25.1 MB
The following packages will be DOWNGRADED:
openssl 3.4.0-hb9d3cd8_0 --> 1.1.1w-hd590300_0
python 3.8.13-ha86cf86_0_cpython --> 3.8.13-h582c2e5_0_cpython
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /media/volume/teran2_disk/biocbuild/.cache/R/basilisk/1.18.0/zellkonverter/1.16.0/zellkonverterAnnDataEnv-0.8.0
added / updated specs:
- anndata=0.8.0
- h5py=3.6.0
- hdf5=1.12.1
- natsort=8.1.0
- numpy=1.22.3
- packaging=21.3
- pandas=1.4.2
- python[version='3.8.13.*,3.8.13.*']
- scipy=1.7.3
- sqlite=3.38.2
The following packages will be downloaded:
package | build
---------------------------|-----------------
anndata-0.8.0 | pyhd8ed1ab_1 74 KB conda-forge
h5py-3.6.0 |nompi_py38hfbb2109_100 1.4 MB conda-forge
natsort-8.1.0 | pyhd8ed1ab_0 35 KB conda-forge
numpy-1.22.3 | py38h99721a1_2 6.8 MB conda-forge
packaging-21.3 | pyhd8ed1ab_0 36 KB conda-forge
pandas-1.4.2 | py38h47df419_2 12.6 MB conda-forge
scipy-1.7.3 | py38h8ce737c_1 23.1 MB conda-forge
sqlite-3.38.2 | h4ff8645_0 1.5 MB conda-forge
------------------------------------------------------------
Total: 45.6 MB
The following NEW packages will be INSTALLED:
anndata conda-forge/noarch::anndata-0.8.0-pyhd8ed1ab_1
c-ares conda-forge/linux-64::c-ares-1.34.3-heb4867d_0
cached-property conda-forge/noarch::cached-property-1.5.2-hd8ed1ab_1
cached_property conda-forge/noarch::cached_property-1.5.2-pyha770c72_1
h5py conda-forge/linux-64::h5py-3.6.0-nompi_py38hfbb2109_100
hdf5 conda-forge/linux-64::hdf5-1.12.1-nompi_h4df4325_104
importlib-metadata conda-forge/noarch::importlib-metadata-8.5.0-pyha770c72_0
importlib_metadata conda-forge/noarch::importlib_metadata-8.5.0-hd8ed1ab_0
keyutils conda-forge/linux-64::keyutils-1.6.1-h166bdaf_0
krb5 conda-forge/linux-64::krb5-1.21.3-h659f571_0
libblas conda-forge/linux-64::libblas-3.9.0-20_linux64_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-20_linux64_openblas
libcurl conda-forge/linux-64::libcurl-8.8.0-hca28451_1
libedit conda-forge/linux-64::libedit-3.1.20191231-he28a2e2_2
libev conda-forge/linux-64::libev-4.33-hd590300_2
libgfortran conda-forge/linux-64::libgfortran-14.2.0-h69a702a_1
libgfortran-ng conda-forge/linux-64::libgfortran-ng-14.2.0-h69a702a_1
libgfortran5 conda-forge/linux-64::libgfortran5-14.2.0-hd5240d6_1
liblapack conda-forge/linux-64::liblapack-3.9.0-20_linux64_openblas
libnghttp2 conda-forge/linux-64::libnghttp2-1.58.0-h47da74e_1
libopenblas conda-forge/linux-64::libopenblas-0.3.25-pthreads_h413a1c8_0
libssh2 conda-forge/linux-64::libssh2-1.11.0-h0841786_0
libstdcxx conda-forge/linux-64::libstdcxx-14.2.0-hc0a3c3a_1
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-14.2.0-h4852527_1
natsort conda-forge/noarch::natsort-8.1.0-pyhd8ed1ab_0
numpy conda-forge/linux-64::numpy-1.22.3-py38h99721a1_2
packaging conda-forge/noarch::packaging-21.3-pyhd8ed1ab_0
pandas conda-forge/linux-64::pandas-1.4.2-py38h47df419_2
pyparsing conda-forge/noarch::pyparsing-3.1.4-pyhd8ed1ab_0
python-dateutil conda-forge/noarch::python-dateutil-2.9.0-pyhd8ed1ab_0
python_abi conda-forge/linux-64::python_abi-3.8-5_cp38
pytz conda-forge/noarch::pytz-2024.2-pyhd8ed1ab_0
scipy conda-forge/linux-64::scipy-1.7.3-py38h8ce737c_1
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
typing_extensions conda-forge/noarch::typing_extensions-4.12.2-pyha770c72_0
zipp conda-forge/noarch::zipp-3.21.0-pyhd8ed1ab_0
zlib conda-forge/linux-64::zlib-1.2.13-h4ab18f5_6
zstd conda-forge/linux-64::zstd-1.5.6-ha6fb4c9_0
The following packages will be UPDATED:
openssl 1.1.1w-hd590300_0 --> 3.4.0-hb9d3cd8_0
The following packages will be DOWNGRADED:
libsqlite 3.47.0-hadc24fc_1 --> 3.46.0-hde9e2c9_0
libzlib 1.3.1-hb9d3cd8_2 --> 1.2.13-h4ab18f5_6
python 3.8.13-h582c2e5_0_cpython --> 3.8.13-ha86cf86_0_cpython
sqlite 3.47.0-h9eae976_1 --> 3.38.2-h4ff8645_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /media/volume/teran2_disk/biocbuild/.cache/R/basilisk/1.18.0/zellkonverter/1.16.0/zellkonverterAnnDataEnv-0.7.6
added / updated specs:
- python=3.7.10
The following packages will be downloaded:
package | build
---------------------------|-----------------
python-3.7.10 |hf930737_104_cpython 57.2 MB conda-forge
------------------------------------------------------------
Total: 57.2 MB
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.2.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.2.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.47.0-hadc24fc_1
libstdcxx conda-forge/linux-64::libstdcxx-14.2.0-hc0a3c3a_1
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-14.2.0-h4852527_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.4.0-hb9d3cd8_0
pip conda-forge/noarch::pip-24.0-pyhd8ed1ab_0
python conda-forge/linux-64::python-3.7.10-hf930737_104_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-69.0.3-pyhd8ed1ab_0
sqlite conda-forge/linux-64::sqlite-3.47.0-h9eae976_1
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
wheel conda-forge/noarch::wheel-0.42.0-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /media/volume/teran2_disk/biocbuild/.cache/R/basilisk/1.18.0/zellkonverter/1.16.0/zellkonverterAnnDataEnv-0.7.6
added / updated specs:
- anndata=0.7.6
- h5py=3.2.1
- hdf5=1.10.6
- natsort=7.1.1
- numpy=1.20.2
- packaging=20.9
- pandas=1.2.4
- python[version='3.7.10.*,3.7.10.*']
- scipy=1.6.3
- sqlite=3.35.5
The following packages will be downloaded:
package | build
---------------------------|-----------------
anndata-0.7.6 | py37h89c1867_0 118 KB conda-forge
h5py-3.2.1 |nompi_py37ha3df211_100 1.3 MB conda-forge
importlib_metadata-4.11.4 | hd8ed1ab_0 4 KB conda-forge
numpy-1.20.2 | py37h038b26d_0 5.8 MB conda-forge
pandas-1.2.4 | py37h219a48f_0 11.8 MB conda-forge
python-3.7.10 |hffdb5ce_100_cpython 57.3 MB conda-forge
scipy-1.6.3 | py37h29e03ee_0 20.5 MB conda-forge
------------------------------------------------------------
Total: 96.7 MB
The following NEW packages will be INSTALLED:
anndata conda-forge/linux-64::anndata-0.7.6-py37h89c1867_0
c-ares conda-forge/linux-64::c-ares-1.34.3-heb4867d_0
cached-property conda-forge/noarch::cached-property-1.5.2-hd8ed1ab_1
cached_property conda-forge/noarch::cached_property-1.5.2-pyha770c72_1
h5py conda-forge/linux-64::h5py-3.2.1-nompi_py37ha3df211_100
hdf5 conda-forge/linux-64::hdf5-1.10.6-nompi_h6a2412b_1114
importlib-metadata conda-forge/linux-64::importlib-metadata-4.11.4-py37h89c1867_0
importlib_metadata conda-forge/noarch::importlib_metadata-4.11.4-hd8ed1ab_0
keyutils conda-forge/linux-64::keyutils-1.6.1-h166bdaf_0
krb5 conda-forge/linux-64::krb5-1.20.1-hf9c8cef_0
libblas conda-forge/linux-64::libblas-3.9.0-20_linux64_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-20_linux64_openblas
libcurl conda-forge/linux-64::libcurl-7.87.0-h6312ad2_0
libedit conda-forge/linux-64::libedit-3.1.20191231-he28a2e2_2
libev conda-forge/linux-64::libev-4.33-hd590300_2
libgfortran conda-forge/linux-64::libgfortran-14.2.0-h69a702a_1
libgfortran-ng conda-forge/linux-64::libgfortran-ng-14.2.0-h69a702a_1
libgfortran5 conda-forge/linux-64::libgfortran5-14.2.0-hd5240d6_1
liblapack conda-forge/linux-64::liblapack-3.9.0-20_linux64_openblas
libnghttp2 conda-forge/linux-64::libnghttp2-1.51.0-hdcd2b5c_0
libopenblas conda-forge/linux-64::libopenblas-0.3.25-pthreads_h413a1c8_0
libssh2 conda-forge/linux-64::libssh2-1.10.0-haa6b8db_3
natsort conda-forge/noarch::natsort-7.1.1-pyhd8ed1ab_0
numpy conda-forge/linux-64::numpy-1.20.2-py37h038b26d_0
packaging conda-forge/noarch::packaging-20.9-pyh44b312d_0
pandas conda-forge/linux-64::pandas-1.2.4-py37h219a48f_0
pyparsing conda-forge/noarch::pyparsing-3.1.4-pyhd8ed1ab_0
python-dateutil conda-forge/noarch::python-dateutil-2.9.0-pyhd8ed1ab_0
python_abi conda-forge/linux-64::python_abi-3.7-4_cp37m
pytz conda-forge/noarch::pytz-2024.2-pyhd8ed1ab_0
scipy conda-forge/linux-64::scipy-1.6.3-py37h29e03ee_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
typing_extensions conda-forge/noarch::typing_extensions-4.7.1-pyha770c72_0
zipp conda-forge/noarch::zipp-3.15.0-pyhd8ed1ab_0
zlib conda-forge/linux-64::zlib-1.2.13-h4ab18f5_6
The following packages will be SUPERSEDED by a higher-priority channel:
setuptools conda-forge/noarch::setuptools-69.0.3~ --> conda-forge/linux-64::setuptools-59.8.0-py37h89c1867_1
The following packages will be DOWNGRADED:
libffi 3.4.2-h7f98852_5 --> 3.3-h58526e2_2
libsqlite 3.47.0-hadc24fc_1 --> 3.46.0-hde9e2c9_0
libzlib 1.3.1-hb9d3cd8_2 --> 1.2.13-h4ab18f5_6
openssl 3.4.0-hb9d3cd8_0 --> 1.1.1w-hd590300_0
python 3.7.10-hf930737_104_cpython --> 3.7.10-hffdb5ce_100_cpython
sqlite 3.47.0-h9eae976_1 --> 3.35.5-h74cdb3f_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
sys:1: FutureWarning: X.dtype being converted to np.float32 from float64. In the next version of anndata (0.9) conversion will not be automatic. Pass dtype explicitly to avoid this warning. Pass `AnnData(X, dtype=X.dtype, ...)` to get the future behavour.
... storing 'tissue' as categorical
... storing 'level1class' as categorical
... storing 'level2class' as categorical
... storing 'featureType' as categorical
[ FAIL 0 | WARN 30 | SKIP 4 | PASS 161 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• On CRAN (4): 'test-read.R:192:5', 'test-read.R:234:5',
'test-zzz-anndata.R:6:5', 'test-zzz-anndata.R:63:5'
[ FAIL 0 | WARN 30 | SKIP 4 | PASS 161 ]
>
> proc.time()
user system elapsed
269.277 67.623 504.089
zellkonverter.Rcheck/zellkonverter-Ex.timings
| name | user | system | elapsed | |
| AnnData-Conversion | 17.068 | 1.953 | 22.955 | |
| AnnData-Environment | 0.004 | 0.000 | 0.004 | |
| readH5AD | 0.476 | 0.039 | 0.570 | |
| setZellkonverterVerbose | 0 | 0 | 0 | |
| writeH5AD | 2.408 | 1.434 | 4.930 | |