| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-07-16 11:41 -0400 (Tue, 16 Jul 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4677 |
| palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4416 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4444 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4393 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4373 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2047/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| supraHex 1.43.0 (landing page) Hai Fang
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino6 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
|
To the developers/maintainers of the supraHex package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/supraHex.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: supraHex |
| Version: 1.43.0 |
| Command: C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:supraHex.install-out.txt --library=C:\Users\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings supraHex_1.43.0.tar.gz |
| StartedAt: 2024-07-16 04:52:44 -0400 (Tue, 16 Jul 2024) |
| EndedAt: 2024-07-16 04:54:01 -0400 (Tue, 16 Jul 2024) |
| EllapsedTime: 77.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: supraHex.Rcheck |
| Warnings: 0 |
##############################################################################
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###
### Running command:
###
### C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:supraHex.install-out.txt --library=C:\Users\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings supraHex_1.43.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.20-bioc/meat/supraHex.Rcheck'
* using R version 4.4.1 (2024-06-14 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'supraHex/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'supraHex' version '1.43.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'supraHex' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
supraHex.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL supraHex ### ############################################################################## ############################################################################## * installing to library 'C:/Users/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'supraHex' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (supraHex)
supraHex.Rcheck/supraHex-Ex.timings
| name | user | system | elapsed | |
| sBMH | 0.06 | 0.00 | 0.06 | |
| sCompReorder | 1.92 | 0.45 | 2.38 | |
| sDistance | 0.24 | 0.02 | 0.25 | |
| sDmat | 0.25 | 0.00 | 0.25 | |
| sDmatCluster | 0.37 | 0.01 | 0.39 | |
| sDmatMinima | 0.24 | 0.02 | 0.25 | |
| sHexDist | 0.01 | 0.00 | 0.02 | |
| sHexGrid | 0 | 0 | 0 | |
| sHexGridVariant | 0 | 0 | 0 | |
| sHexPolygon | 0.06 | 0.00 | 0.06 | |
| sInitial | 0.02 | 0.00 | 0.01 | |
| sMapOverlay | 0.28 | 0.02 | 0.30 | |
| sNeighAny | 0 | 0 | 0 | |
| sNeighDirect | 0.02 | 0.00 | 0.02 | |
| sPipeline | 0 | 0 | 0 | |
| sTopology | 0.65 | 0.03 | 0.68 | |
| sTrainBatch | 0.05 | 0.00 | 0.05 | |
| sTrainSeq | 0.20 | 0.09 | 0.30 | |
| sTrainology | 0 | 0 | 0 | |
| sWriteData | 0.52 | 0.11 | 0.58 | |
| visColoralpha | 0 | 0 | 0 | |
| visColorbar | 0.03 | 0.00 | 0.03 | |
| visColormap | 0 | 0 | 0 | |
| visCompReorder | 3.63 | 0.86 | 4.50 | |
| visDmatCluster | 0 | 0 | 0 | |
| visDmatHeatmap | 0 | 0 | 0 | |
| visHeatmap | 0.06 | 0.00 | 0.06 | |
| visHeatmapAdv | 0.29 | 0.02 | 0.32 | |
| visHexAnimate | 0 | 0 | 0 | |
| visHexBarplot | 0.68 | 0.04 | 0.72 | |
| visHexComp | 0.23 | 0.02 | 0.25 | |
| visHexGrid | 0.22 | 0.00 | 0.22 | |
| visHexMapping | 1.15 | 0.22 | 1.37 | |
| visHexMulComp | 0.81 | 0.12 | 0.94 | |
| visHexPattern | 1.96 | 0.35 | 2.30 | |
| visKernels | 0.01 | 0.01 | 0.03 | |
| visTreeBSclust | 0 | 0 | 0 | |
| visTreeBootstrap | 0.02 | 0.02 | 0.03 | |
| visVp | 0.03 | 0.01 | 0.04 | |