| Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2025-04-02 19:34 -0400 (Wed, 02 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4764 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4495 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4522 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4449 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4426 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1733/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| rGenomeTracks 1.12.0 (landing page) Omar Elashkar
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the rGenomeTracks package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rGenomeTracks.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: rGenomeTracks |
| Version: 1.12.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:rGenomeTracks.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings rGenomeTracks_1.12.0.tar.gz |
| StartedAt: 2025-04-02 06:03:55 -0400 (Wed, 02 Apr 2025) |
| EndedAt: 2025-04-02 06:04:52 -0400 (Wed, 02 Apr 2025) |
| EllapsedTime: 57.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: rGenomeTracks.Rcheck |
| Warnings: 0 |
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###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:rGenomeTracks.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings rGenomeTracks_1.12.0.tar.gz
###
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##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/rGenomeTracks.Rcheck’
* using R version 4.4.3 (2025-02-28)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘rGenomeTracks/DESCRIPTION’ ... OK
* this is package ‘rGenomeTracks’ version ‘1.12.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘rGenomeTracks’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
rGenomeTracks.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL rGenomeTracks ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘rGenomeTracks’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rGenomeTracks)
rGenomeTracks.Rcheck/tests/testthat.Rout
R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(rGenomeTracks)
>
> test_check("rGenomeTracks")
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 13 ]
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 13 ]
>
> proc.time()
user system elapsed
1.909 0.181 2.111
rGenomeTracks.Rcheck/rGenomeTracks-Ex.timings
| name | user | system | elapsed | |
| epilogos_json | 0.006 | 0.003 | 0.009 | |
| install_pyGenomeTracks | 0.000 | 0.000 | 0.001 | |
| plot_gtracks | 0.000 | 0.001 | 0.001 | |
| plus-genome_track-genome_track-method | 0.003 | 0.002 | 0.006 | |
| track_bed | 0.003 | 0.002 | 0.004 | |
| track_bedgraph | 0.003 | 0.001 | 0.004 | |
| track_bedgraph_matrix | 0.001 | 0.000 | 0.002 | |
| track_bigwig | 0.002 | 0.001 | 0.003 | |
| track_domains | 0.001 | 0.001 | 0.002 | |
| track_epilogos | 0.004 | 0.003 | 0.006 | |
| track_gtf | 0.001 | 0.001 | 0.002 | |
| track_hic_matrix | 0.001 | 0.000 | 0.001 | |
| track_hlines | 0.002 | 0.001 | 0.003 | |
| track_links | 0.003 | 0.002 | 0.005 | |
| track_narrow_peak | 0.005 | 0.001 | 0.007 | |
| track_scalebar | 0.002 | 0.001 | 0.002 | |
| track_spacer | 0.003 | 0.002 | 0.006 | |
| track_vlines | 0.003 | 0.002 | 0.005 | |
| track_x_axis | 0.001 | 0.001 | 0.002 | |