Britta Velten
| Snapshot Date: 2024-11-19 13:40 -0500 (Tue, 19 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/graper |
| git_branch: RELEASE_3_20 |
| git_last_commit: 04d5a90 |
| git_last_commit_date: 2024-10-29 10:33:50 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-11-20 12:06 -0500 (Wed, 20 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4481 |
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4479 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4359 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 899/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| graper 1.22.0 (landing page) Britta Velten
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: graper |
| Version: 1.22.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.22.0.tar.gz |
| StartedAt: 2024-11-19 22:45:46 -0500 (Tue, 19 Nov 2024) |
| EndedAt: 2024-11-19 22:50:23 -0500 (Tue, 19 Nov 2024) |
| EllapsedTime: 276.7 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: graper.Rcheck |
| Warnings: 1 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.22.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/graper.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.22.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... WARNING
Found the following significant warnings:
/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include/boost/math/tools/config.hpp:23:6: warning: "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-W#warnings]
# warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
See ‘/Users/biocbuild/bbs-3.20-bioc/meat/graper.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used SDK: ‘MacOSX11.3.sdk’
* checking C++ specification ... NOTE
Specified C++11: please drop specification unless essential
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 3 NOTEs
See
‘/Users/biocbuild/bbs-3.20-bioc/meat/graper.Rcheck/00check.log’
for details.
graper.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################
* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘graper’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using C++11
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fit_graper.cpp -o fit_graper.o
In file included from fit_graper.cpp:4:
In file included from ./graper_linear_dense_ff.h:2:
In file included from /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include/boost/math/special_functions/digamma.hpp:15:
In file included from /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include/boost/math/special_functions/math_fwd.hpp:29:
In file included from /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include/boost/math/special_functions/detail/round_fwd.hpp:11:
/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include/boost/math/tools/config.hpp:23:6: warning: "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-W#warnings]
# warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
^
1 warning generated.
clang++ -arch x86_64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o graper.so RcppExports.o fit_graper.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)
graper.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graper)
>
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-832.236
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-568.91
ELB improved by 263.326
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-508.079
ELB improved by 60.8315
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-462.539
ELB improved by 45.5395
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.948
ELB improved by 20.5912
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.35
ELB improved by 7.59785
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.008
ELB improved by 4.34255
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.626
ELB improved by 3.3814
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.549
ELB improved by 3.07774
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.518
ELB improved by 3.03025
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.422
ELB improved by 3.09643
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.218
ELB improved by 3.20388
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.951
ELB improved by 3.26745
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.773
ELB improved by 3.17729
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.921
ELB improved by 2.85243
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.608
ELB improved by 2.31314
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.911
ELB improved by 1.69643
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.747
ELB improved by 1.1647
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.957
ELB improved by 0.789779
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.404
ELB improved by 0.553253
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.994
ELB improved by 0.409297
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.674
ELB improved by 0.320477
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.41
ELB improved by 0.263482
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.185
ELB improved by 0.225124
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.987
ELB improved by 0.198121
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.809
ELB improved by 0.178406
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.645
ELB improved by 0.163631
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.493
ELB improved by 0.152359
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.349
ELB improved by 0.143616
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.212
ELB improved by 0.13665
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.082
ELB improved by 0.130808
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.956
ELB improved by 0.125519
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.836
ELB improved by 0.120348
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.721
ELB improved by 0.115074
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.611
ELB improved by 0.109702
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.506
ELB improved by 0.104404
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.407
ELB improved by 0.099404
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.312
ELB improved by 0.0949089
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.221
ELB improved by 0.0910877
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.133
ELB improved by 0.0880964
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.047
ELB improved by 0.086115
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.961
ELB improved by 0.0853795
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.875
ELB improved by 0.0861978
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.786
ELB improved by 0.0889324
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.692
ELB improved by 0.0939102
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.591
ELB improved by 0.101208
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.481
ELB improved by 0.110327
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.361
ELB improved by 0.119971
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.233
ELB improved by 0.128318
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.099
ELB improved by 0.13375
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.963
ELB improved by 0.135407
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.83
ELB improved by 0.13328
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.702
ELB improved by 0.128234
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.58
ELB improved by 0.121832
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.464
ELB improved by 0.115681
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.354
ELB improved by 0.110873
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.246
ELB improved by 0.107999
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.138
ELB improved by 0.107479
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.028
ELB improved by 0.109884
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.912
ELB improved by 0.116197
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.784
ELB improved by 0.128034
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.636
ELB improved by 0.147513
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.461
ELB improved by 0.175625
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.253
ELB improved by 0.207663
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.023
ELB improved by 0.230354
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.79
ELB improved by 0.233145
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.568
ELB improved by 0.221342
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.362
ELB improved by 0.205946
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.171
ELB improved by 0.19181
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.991
ELB improved by 0.179263
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.824
ELB improved by 0.167758
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.666
ELB improved by 0.15708
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.519
ELB improved by 0.147466
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.38
ELB improved by 0.139426
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.246
ELB improved by 0.133337
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.117
ELB improved by 0.128788
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.993
ELB improved by 0.124139
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.876
ELB improved by 0.117245
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.769
ELB improved by 0.107195
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.674
ELB improved by 0.0948384
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.593
ELB improved by 0.0814774
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.524
ELB improved by 0.0680746
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.469
ELB improved by 0.055549
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.424
ELB improved by 0.0447687
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.388
ELB improved by 0.0361547
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.358
ELB improved by 0.0296015
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.334
ELB improved by 0.0247209
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.313
ELB improved by 0.0210795
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.294
ELB improved by 0.0183092
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.278
ELB improved by 0.0161332
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.264
ELB improved by 0.014357
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.251
ELB improved by 0.0128514
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.239
ELB improved by 0.0115346
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.229
ELB improved by 0.0103578
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.22
ELB improved by 0.00929345
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-891.895
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-573.243
ELB improved by 318.652
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-517.171
ELB improved by 56.0719
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-481.331
ELB improved by 35.8395
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-463.421
ELB improved by 17.9099
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.356
ELB improved by 8.06555
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.358
ELB improved by 4.99779
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.103
ELB improved by 4.25475
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.942
ELB improved by 4.16148
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.56
ELB improved by 4.38201
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.769
ELB improved by 4.79072
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.534
ELB improved by 5.23482
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.097
ELB improved by 5.43762
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.005
ELB improved by 5.09135
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.873
ELB improved by 4.13206
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.98
ELB improved by 2.89322
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.132
ELB improved by 1.84754
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.951
ELB improved by 1.18102
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.138
ELB improved by 0.813101
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.52
ELB improved by 0.618836
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.006
ELB improved by 0.513726
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.56
ELB improved by 0.445765
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.179
ELB improved by 0.381519
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.868
ELB improved by 0.31083
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.623
ELB improved by 0.244652
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.43
ELB improved by 0.193223
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.273
ELB improved by 0.156481
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.143
ELB improved by 0.130126
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.033
ELB improved by 0.110461
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.938
ELB improved by 0.0951918
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.855
ELB improved by 0.0829775
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.782
ELB improved by 0.0730062
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.717
ELB improved by 0.0647528
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.659
ELB improved by 0.0578549
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.607
ELB improved by 0.0520502
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.56
ELB improved by 0.0471414
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.517
ELB improved by 0.0429761
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.477
ELB improved by 0.039434
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.441
ELB improved by 0.0364174
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.407
ELB improved by 0.0338456
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.375
ELB improved by 0.0316494
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.346
ELB improved by 0.0297681
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.318
ELB improved by 0.0281473
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.291
ELB improved by 0.0267383
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.265
ELB improved by 0.0254983
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.241
ELB improved by 0.0243925
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.218
ELB improved by 0.0233951
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.195
ELB improved by 0.0224912
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.173
ELB improved by 0.0216759
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.152
ELB improved by 0.0209525
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.132
ELB improved by 0.0203286
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.112
ELB improved by 0.0198127
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.093
ELB improved by 0.0194106
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.074
ELB improved by 0.0191239
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.055
ELB improved by 0.0189497
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.036
ELB improved by 0.0188818
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.017
ELB improved by 0.0189117
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.998
ELB improved by 0.0190307
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.979
ELB improved by 0.0192306
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.959
ELB improved by 0.0195046
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.939
ELB improved by 0.0198481
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.919
ELB improved by 0.0202581
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.898
ELB improved by 0.0207343
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.877
ELB improved by 0.0212779
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.855
ELB improved by 0.0218927
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.833
ELB improved by 0.0225845
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.809
ELB improved by 0.0233619
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.785
ELB improved by 0.0242362
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.76
ELB improved by 0.0252225
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.733
ELB improved by 0.0263405
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.706
ELB improved by 0.0276155
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.677
ELB improved by 0.0290804
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.646
ELB improved by 0.0307778
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.613
ELB improved by 0.0327635
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.578
ELB improved by 0.03511
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.54
ELB improved by 0.0379127
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.499
ELB improved by 0.0412962
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.453
ELB improved by 0.0454223
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.403
ELB improved by 0.0504968
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.346
ELB improved by 0.0567708
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.282
ELB improved by 0.0645269
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.208
ELB improved by 0.0740344
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.122
ELB improved by 0.0854544
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.023
ELB improved by 0.0986991
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.91
ELB improved by 0.113304
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.782
ELB improved by 0.12845
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.639
ELB improved by 0.143219
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.482
ELB improved by 0.156956
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.312
ELB improved by 0.169453
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.131
ELB improved by 0.180821
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.94
ELB improved by 0.191238
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.739
ELB improved by 0.200754
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.53
ELB improved by 0.209202
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.314
ELB improved by 0.216189
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.093
ELB improved by 0.221141
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.869
ELB improved by 0.223407
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.647
ELB improved by 0.222397
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.429
ELB improved by 0.217741
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.22
ELB improved by 0.209411
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.022
ELB improved by 0.197765
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.839
ELB improved by 0.183493
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.671
ELB improved by 0.167487
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.52
ELB improved by 0.150674
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.387
ELB improved by 0.133878
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.269
ELB improved by 0.117738
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.166
ELB improved by 0.102686
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.077
ELB improved by 0.0889681
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397
ELB improved by 0.0766866
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.935
ELB improved by 0.0658437
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.878
ELB improved by 0.0563762
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.83
ELB improved by 0.0481826
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.789
ELB improved by 0.0411411
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.754
ELB improved by 0.0351228
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.724
ELB improved by 0.0300004
iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.698
ELB improved by 0.0256535
iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.676
ELB improved by 0.0219722
iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.657
ELB improved by 0.0188584
iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.641
ELB improved by 0.0162261
iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.627
ELB improved by 0.0140008
iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.615
ELB improved by 0.012119
iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.604
ELB improved by 0.0105264
iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.595
ELB improved by 0.00917723
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-867.472
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-600.014
ELB improved by 267.458
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-539.179
ELB improved by 60.8344
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-490.306
ELB improved by 48.8727
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-464.063
ELB improved by 26.2434
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.991
ELB improved by 11.0716
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.737
ELB improved by 6.25437
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.112
ELB improved by 5.62475
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.886
ELB improved by 6.22663
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.902
ELB improved by 6.98326
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.038
ELB improved by 6.86495
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.613
ELB improved by 5.42469
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.134
ELB improved by 3.47872
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.093
ELB improved by 2.04157
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.822
ELB improved by 1.27028
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.936
ELB improved by 0.886482
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.257
ELB improved by 0.678503
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.707
ELB improved by 0.549998
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.246
ELB improved by 0.461121
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.852
ELB improved by 0.394658
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.509
ELB improved by 0.342661
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.208
ELB improved by 0.301281
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.939
ELB improved by 0.268673
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.695
ELB improved by 0.244171
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.467
ELB improved by 0.22802
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.246
ELB improved by 0.221046
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.023
ELB improved by 0.222927
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.795
ELB improved by 0.227624
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.574
ELB improved by 0.221599
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.375
ELB improved by 0.198232
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.206
ELB improved by 0.168941
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.061
ELB improved by 0.145504
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.932
ELB improved by 0.129285
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.814
ELB improved by 0.117686
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.705
ELB improved by 0.108676
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.604
ELB improved by 0.101196
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.509
ELB improved by 0.0947159
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.42
ELB improved by 0.0889456
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.337
ELB improved by 0.0837092
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.258
ELB improved by 0.0788889
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.183
ELB improved by 0.0744011
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.113
ELB improved by 0.070184
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.047
ELB improved by 0.0661917
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.985
ELB improved by 0.0623901
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.926
ELB improved by 0.0587544
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.871
ELB improved by 0.0552674
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.819
ELB improved by 0.0519183
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.77
ELB improved by 0.048701
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.724
ELB improved by 0.045613
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.682
ELB improved by 0.0426546
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.642
ELB improved by 0.0398278
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.605
ELB improved by 0.037135
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.57
ELB improved by 0.0345788
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.538
ELB improved by 0.0321614
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.508
ELB improved by 0.0298841
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.48
ELB improved by 0.0277474
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.455
ELB improved by 0.0257516
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.431
ELB improved by 0.0238961
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.408
ELB improved by 0.0221811
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.388
ELB improved by 0.0206074
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.369
ELB improved by 0.0191774
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.351
ELB improved by 0.0178964
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.334
ELB improved by 0.0167745
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.318
ELB improved by 0.0158294
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.303
ELB improved by 0.0150922
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.288
ELB improved by 0.0146176
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.274
ELB improved by 0.0145041
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.259
ELB improved by 0.0149335
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.243
ELB improved by 0.0162555
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.224
ELB improved by 0.0191675
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.199
ELB improved by 0.0250996
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.162
ELB improved by 0.0369605
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.102
ELB improved by 0.0599963
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.002
ELB improved by 0.0996414
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.855
ELB improved by 0.147251
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.688
ELB improved by 0.16646
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.548
ELB improved by 0.140015
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.449
ELB improved by 0.099572
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.38
ELB improved by 0.0686119
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.331
ELB improved by 0.0488225
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.295
ELB improved by 0.0364694
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.266
ELB improved by 0.0284864
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.243
ELB improved by 0.0230105
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.224
ELB improved by 0.0190046
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.208
ELB improved by 0.0159111
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.195
ELB improved by 0.0134313
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.183
ELB improved by 0.0114007
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.174
ELB improved by 0.00972129
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-874.409
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-569.568
ELB improved by 304.841
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-515.113
ELB improved by 54.4553
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-485.706
ELB improved by 29.407
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-471.838
ELB improved by 13.8673
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-464.118
ELB improved by 7.72061
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-458.616
ELB improved by 5.50201
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.293
ELB improved by 5.32278
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.536
ELB improved by 5.75699
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.535
ELB improved by 6.00066
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.093
ELB improved by 5.44207
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.964
ELB improved by 4.12884
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.236
ELB improved by 2.72871
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.519
ELB improved by 1.71659
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.399
ELB improved by 1.12026
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.607
ELB improved by 0.791651
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425
ELB improved by 0.607061
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.503
ELB improved by 0.497372
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.075
ELB improved by 0.428106
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.693
ELB improved by 0.382193
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.342
ELB improved by 0.350802
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.013
ELB improved by 0.329026
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.699
ELB improved by 0.313913
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.395
ELB improved by 0.303537
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.099
ELB improved by 0.296564
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.807
ELB improved by 0.292028
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.517
ELB improved by 0.289237
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.23
ELB improved by 0.287723
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.942
ELB improved by 0.287235
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.655
ELB improved by 0.287748
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.365
ELB improved by 0.289494
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.072
ELB improved by 0.293037
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.773
ELB improved by 0.299481
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.462
ELB improved by 0.31099
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.13
ELB improved by 0.332126
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.757
ELB improved by 0.373041
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.303
ELB improved by 0.453974
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.713
ELB improved by 0.589166
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.007
ELB improved by 0.706006
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.309
ELB improved by 0.697963
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.692
ELB improved by 0.617578
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.163
ELB improved by 0.529315
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.717
ELB improved by 0.445839
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.346
ELB improved by 0.371047
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.037
ELB improved by 0.308471
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.777
ELB improved by 0.26056
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.548
ELB improved by 0.228438
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.336
ELB improved by 0.212006
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.127
ELB improved by 0.209588
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.909
ELB improved by 0.217138
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.681
ELB improved by 0.228227
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.446
ELB improved by 0.23541
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.213
ELB improved by 0.232634
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.994
ELB improved by 0.218836
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.796
ELB improved by 0.198789
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.617
ELB improved by 0.178208
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.458
ELB improved by 0.159614
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.315
ELB improved by 0.142712
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.189
ELB improved by 0.126457
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.078
ELB improved by 0.110486
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.983
ELB improved by 0.0953242
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.901
ELB improved by 0.0817883
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.831
ELB improved by 0.0704064
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.769
ELB improved by 0.0612672
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.715
ELB improved by 0.054161
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.666
ELB improved by 0.048769
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.622
ELB improved by 0.0447882
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.58
ELB improved by 0.041986
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.539
ELB improved by 0.0402108
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.5
ELB improved by 0.0393777
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.461
ELB improved by 0.0394376
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.42
ELB improved by 0.0403266
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.378
ELB improved by 0.0418919
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.335
ELB improved by 0.0438033
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.289
ELB improved by 0.0455095
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.243
ELB improved by 0.0463302
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.197
ELB improved by 0.0457319
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.153
ELB improved by 0.0436421
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.113
ELB improved by 0.0405369
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.076
ELB improved by 0.0372136
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.041
ELB improved by 0.0344543
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.008
ELB improved by 0.0328095
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.976
ELB improved by 0.0325204
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.942
ELB improved by 0.0334563
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.907
ELB improved by 0.0350015
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.871
ELB improved by 0.036035
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.836
ELB improved by 0.0353215
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.804
ELB improved by 0.0323021
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.776
ELB improved by 0.0275519
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.754
ELB improved by 0.0222996
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.736
ELB improved by 0.0175729
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.722
ELB improved by 0.013819
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.711
ELB improved by 0.0110377
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.702
ELB improved by 0.00903919
ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
>
> proc.time()
user system elapsed
1.828 0.204 2.041
graper.Rcheck/graper-Ex.timings
| name | user | system | elapsed | |
| coef.graper | 0.045 | 0.014 | 0.059 | |
| getPIPs | 0.042 | 0.014 | 0.057 | |
| graper | 0.066 | 0.016 | 0.082 | |
| makeExampleData | 0.008 | 0.001 | 0.009 | |
| makeExampleDataWithUnequalGroups | 0.022 | 0.004 | 0.027 | |
| plotELBO | 0.171 | 0.019 | 0.191 | |
| plotGroupPenalties | 0.611 | 0.023 | 0.644 | |
| plotPosterior | 0.444 | 0.019 | 0.469 | |
| predict.graper | 1.667 | 0.081 | 1.773 | |
| print.graper | 0.048 | 0.014 | 0.062 | |