Aaron Lun
| Snapshot Date: 2025-03-31 13:00 -0400 (Mon, 31 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/basilisk |
| git_branch: RELEASE_3_20 |
| git_last_commit: 31887d4 |
| git_last_commit_date: 2024-10-29 10:43:26 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-04-02 19:31 -0400 (Wed, 02 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4764 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4495 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4522 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4449 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4426 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 139/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| basilisk 1.18.0 (landing page) Aaron Lun
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | TIMEOUT | OK | |||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the basilisk package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/basilisk.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: basilisk |
| Version: 1.18.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:basilisk.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings basilisk_1.18.0.tar.gz |
| StartedAt: 2025-03-31 23:36:15 -0400 (Mon, 31 Mar 2025) |
| EndedAt: 2025-04-01 00:16:16 -0400 (Tue, 01 Apr 2025) |
| EllapsedTime: 2400.7 seconds |
| RetCode: None |
| Status: TIMEOUT |
| CheckDir: basilisk.Rcheck |
| Warnings: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:basilisk.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings basilisk_1.18.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck’
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘basilisk/DESCRIPTION’ ... OK
* this is package ‘basilisk’ version ‘1.18.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
inst/example/.BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘basilisk’ can be installed ... NOTE
Found the following notes/warnings:
Non-staged installation was used
See ‘/Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
basiliskStart 373.821 65.982 646.055
createLocalBasiliskEnv 183.660 31.698 262.782
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
basilisk.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL basilisk ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘basilisk’ ... ** using non-staged installation via StagedInstall field ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (basilisk)
basilisk.Rcheck/tests/testthat.Rout
R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(basilisk)
Loading required package: reticulate
> if (.Platform$OS.type != "windows") test_check("basilisk")
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-64::bzip2-1.0.8-hfdf4475_7
ca-certificates conda-forge/osx-64::ca-certificates-2025.1.31-h8857fd0_0
libffi conda-forge/osx-64::libffi-3.4.6-h281671d_1
liblzma conda-forge/osx-64::liblzma-5.6.4-hd471939_0
liblzma-devel conda-forge/osx-64::liblzma-devel-5.6.4-hd471939_0
libsqlite conda-forge/osx-64::libsqlite-3.49.1-hdb6dae5_2
libzlib conda-forge/osx-64::libzlib-1.3.1-hd23fc13_2
ncurses conda-forge/osx-64::ncurses-6.5-h0622a9a_3
openssl conda-forge/osx-64::openssl-3.4.1-hc426f3f_0
pip conda-forge/noarch::pip-25.0.1-pyh8b19718_0
python conda-forge/osx-64::python-3.10.14-h00d2728_0_cpython
readline conda-forge/osx-64::readline-8.2-h7cca4af_2
setuptools conda-forge/noarch::setuptools-75.8.2-pyhff2d567_0
tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1
tzdata conda-forge/noarch::tzdata-2025b-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
xz conda-forge/osx-64::xz-5.6.4-h357f2ed_0
xz-gpl-tools conda-forge/osx-64::xz-gpl-tools-5.6.4-h357f2ed_0
xz-tools conda-forge/osx-64::xz-tools-5.6.4-hd471939_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 25.3.0
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 25.3.0
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- pandas=1.4.3
- python-dateutil=2.8.2
- python=3.10.14
- pytz=2022.2.1
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-64::libblas-3.9.0-31_h7f60823_openblas
libcblas conda-forge/osx-64::libcblas-3.9.0-31_hff6cab4_openblas
libcxx conda-forge/osx-64::libcxx-20.1.1-hf95d169_0
libgfortran conda-forge/osx-64::libgfortran-5.0.0-14_2_0_h51e75f0_1
libgfortran5 conda-forge/osx-64::libgfortran5-14.2.0-h51e75f0_1
liblapack conda-forge/osx-64::liblapack-3.9.0-31_h236ab99_openblas
libopenblas conda-forge/osx-64::libopenblas-0.3.29-openmp_hbf64a52_0
llvm-openmp conda-forge/osx-64::llvm-openmp-20.1.1-ha54dae1_1
numpy conda-forge/osx-64::numpy-1.26.4-py310h4bfa8fc_0
pandas conda-forge/osx-64::pandas-1.4.3-py310h3099161_0
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python_abi conda-forge/osx-64::python_abi-3.10-5_cp310
pytz conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-64::bzip2-1.0.8-hfdf4475_7
ca-certificates conda-forge/osx-64::ca-certificates-2025.1.31-h8857fd0_0
libffi conda-forge/osx-64::libffi-3.4.6-h281671d_1
liblzma conda-forge/osx-64::liblzma-5.6.4-hd471939_0
liblzma-devel conda-forge/osx-64::liblzma-devel-5.6.4-hd471939_0
libsqlite conda-forge/osx-64::libsqlite-3.49.1-hdb6dae5_2
libzlib conda-forge/osx-64::libzlib-1.3.1-hd23fc13_2
ncurses conda-forge/osx-64::ncurses-6.5-h0622a9a_3
openssl conda-forge/osx-64::openssl-3.4.1-hc426f3f_0
pip conda-forge/noarch::pip-25.0.1-pyh8b19718_0
python conda-forge/osx-64::python-3.10.14-h00d2728_0_cpython
readline conda-forge/osx-64::readline-8.2-h7cca4af_2
setuptools conda-forge/noarch::setuptools-75.8.2-pyhff2d567_0
tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1
tzdata conda-forge/noarch::tzdata-2025b-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
xz conda-forge/osx-64::xz-5.6.4-h357f2ed_0
xz-gpl-tools conda-forge/osx-64::xz-gpl-tools-5.6.4-h357f2ed_0
xz-tools conda-forge/osx-64::xz-tools-5.6.4-hd471939_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 25.3.0
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 25.3.0
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- pandas=1.4.2
- python-dateutil=2.8.1
- python=3.10.14
- pytz=2022.1
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-64::libblas-3.9.0-31_h7f60823_openblas
libcblas conda-forge/osx-64::libcblas-3.9.0-31_hff6cab4_openblas
libcxx conda-forge/osx-64::libcxx-20.1.1-hf95d169_0
libgfortran conda-forge/osx-64::libgfortran-5.0.0-14_2_0_h51e75f0_1
libgfortran5 conda-forge/osx-64::libgfortran5-14.2.0-h51e75f0_1
liblapack conda-forge/osx-64::liblapack-3.9.0-31_h236ab99_openblas
libopenblas conda-forge/osx-64::libopenblas-0.3.29-openmp_hbf64a52_0
llvm-openmp conda-forge/osx-64::llvm-openmp-20.1.1-ha54dae1_1
numpy conda-forge/osx-64::numpy-1.26.4-py310h4bfa8fc_0
pandas conda-forge/osx-64::pandas-1.4.2-py310h3099161_2
python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0
python_abi conda-forge/osx-64::python_abi-3.10-5_cp310
pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=2.7
The following NEW packages will be INSTALLED:
ca-certificates conda-forge/osx-64::ca-certificates-2025.1.31-h8857fd0_0
certifi conda-forge/osx-64::certifi-2019.11.28-py27h8c360ce_1
libcxx conda-forge/osx-64::libcxx-20.1.1-hf95d169_0
libffi conda-forge/osx-64::libffi-3.2.1-hb1e8313_1007
libsqlite conda-forge/osx-64::libsqlite-3.46.0-h1b8f9f3_0
libzlib conda-forge/osx-64::libzlib-1.2.13-h87427d6_6
ncurses conda-forge/osx-64::ncurses-6.5-h0622a9a_3
openssl conda-forge/osx-64::openssl-1.1.1w-h8a1eda9_0
pip conda-forge/noarch::pip-20.1.1-pyh9f0ad1d_0
python conda-forge/osx-64::python-2.7.15-h8e446fc_1011_cpython
python_abi conda-forge/osx-64::python_abi-2.7-1_cp27m
readline conda-forge/osx-64::readline-8.2-h7cca4af_2
setuptools conda-forge/osx-64::setuptools-44.0.0-py27_0
sqlite conda-forge/osx-64::sqlite-3.46.0-h28673e1_0
tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1
wheel conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
zlib conda-forge/osx-64::zlib-1.2.13-h87427d6_6
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 25.3.0
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 25.3.0
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-64::bzip2-1.0.8-hfdf4475_7
ca-certificates conda-forge/osx-64::ca-certificates-2025.1.31-h8857fd0_0
libffi conda-forge/osx-64::libffi-3.4.6-h281671d_1
liblzma conda-forge/osx-64::liblzma-5.6.4-hd471939_0
liblzma-devel conda-forge/osx-64::liblzma-devel-5.6.4-hd471939_0
libsqlite conda-forge/osx-64::libsqlite-3.49.1-hdb6dae5_2
libzlib conda-forge/osx-64::libzlib-1.3.1-hd23fc13_2
ncurses conda-forge/osx-64::ncurses-6.5-h0622a9a_3
openssl conda-forge/osx-64::openssl-3.4.1-hc426f3f_0
pip conda-forge/noarch::pip-25.0.1-pyh8b19718_0
python conda-forge/osx-64::python-3.10.14-h00d2728_0_cpython
readline conda-forge/osx-64::readline-8.2-h7cca4af_2
setuptools conda-forge/noarch::setuptools-75.8.2-pyhff2d567_0
tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1
tzdata conda-forge/noarch::tzdata-2025b-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
xz conda-forge/osx-64::xz-5.6.4-h357f2ed_0
xz-gpl-tools conda-forge/osx-64::xz-gpl-tools-5.6.4-h357f2ed_0
xz-tools conda-forge/osx-64::xz-tools-5.6.4-hd471939_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 25.3.0
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 25.3.0
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python-dateutil=2.8.1
- python=3.10.14
- pytz=2022.1
The following NEW packages will be INSTALLED:
python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0
pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting pandas==1.4.2
Using cached pandas-1.4.2-cp310-cp310-macosx_10_9_x86_64.whl.metadata (12 kB)
Requirement already satisfied: python-dateutil>=2.8.1 in ./install-test-client/thingo/lib/python3.10/site-packages (from pandas==1.4.2) (2.8.1)
Requirement already satisfied: pytz>=2020.1 in ./install-test-client/thingo/lib/python3.10/site-packages (from pandas==1.4.2) (2022.1)
Collecting numpy>=1.21.0 (from pandas==1.4.2)
Using cached numpy-2.2.4-cp310-cp310-macosx_10_9_x86_64.whl.metadata (62 kB)
Requirement already satisfied: six>=1.5 in ./install-test-client/thingo/lib/python3.10/site-packages (from python-dateutil>=2.8.1->pandas==1.4.2) (1.17.0)
Using cached pandas-1.4.2-cp310-cp310-macosx_10_9_x86_64.whl (11.1 MB)
Using cached numpy-2.2.4-cp310-cp310-macosx_10_9_x86_64.whl (21.3 MB)
Installing collected packages: numpy, pandas
Successfully installed numpy-2.2.4 pandas-1.4.2
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-64::bzip2-1.0.8-hfdf4475_7
ca-certificates conda-forge/osx-64::ca-certificates-2025.1.31-h8857fd0_0
libffi conda-forge/osx-64::libffi-3.4.6-h281671d_1
liblzma conda-forge/osx-64::liblzma-5.6.4-hd471939_0
liblzma-devel conda-forge/osx-64::liblzma-devel-5.6.4-hd471939_0
libsqlite conda-forge/osx-64::libsqlite-3.49.1-hdb6dae5_2
libzlib conda-forge/osx-64::libzlib-1.3.1-hd23fc13_2
ncurses conda-forge/osx-64::ncurses-6.5-h0622a9a_3
openssl conda-forge/osx-64::openssl-3.4.1-hc426f3f_0
pip conda-forge/noarch::pip-25.0.1-pyh8b19718_0
python conda-forge/osx-64::python-3.10.14-h00d2728_0_cpython
readline conda-forge/osx-64::readline-8.2-h7cca4af_2
setuptools conda-forge/noarch::setuptools-75.8.2-pyhff2d567_0
tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1
tzdata conda-forge/noarch::tzdata-2025b-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
xz conda-forge/osx-64::xz-5.6.4-h357f2ed_0
xz-gpl-tools conda-forge/osx-64::xz-gpl-tools-5.6.4-h357f2ed_0
xz-tools conda-forge/osx-64::xz-tools-5.6.4-hd471939_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 25.3.0
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 25.3.0
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Processing /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/basilisk/example/inst/test_dummy
Preparing metadata (setup.py): started
Preparing metadata (setup.py): finished with status 'done'
Building wheels for collected packages: test_dummy
Building wheel for test_dummy (setup.py): started
Building wheel for test_dummy (setup.py): finished with status 'done'
Created wheel for test_dummy: filename=test_dummy-0.1-py3-none-any.whl size=1310 sha256=4d9a9da9cafcd54f1a5ffa8ff773cc62235d0b0290768fb0586f22526aaca4a9
Stored in directory: /private/tmp/pip-ephem-wheel-cache-2tvm2zdu/wheels/ed/a3/7d/ba3ef9c518a7b7615979f85274f2f8ae9c61afc957830315d4
Successfully built test_dummy
Installing collected packages: test_dummy
Successfully installed test_dummy-0.1
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-64::bzip2-1.0.8-hfdf4475_7
ca-certificates conda-forge/osx-64::ca-certificates-2025.1.31-h8857fd0_0
libffi conda-forge/osx-64::libffi-3.4.6-h281671d_1
liblzma conda-forge/osx-64::liblzma-5.6.4-hd471939_0
liblzma-devel conda-forge/osx-64::liblzma-devel-5.6.4-hd471939_0
libsqlite conda-forge/osx-64::libsqlite-3.49.1-hdb6dae5_2
libzlib conda-forge/osx-64::libzlib-1.3.1-hd23fc13_2
ncurses conda-forge/osx-64::ncurses-6.5-h0622a9a_3
openssl conda-forge/osx-64::openssl-3.4.1-hc426f3f_0
pip conda-forge/noarch::pip-25.0.1-pyh8b19718_0
python conda-forge/osx-64::python-3.10.14-h00d2728_0_cpython
readline conda-forge/osx-64::readline-8.2-h7cca4af_2
setuptools conda-forge/noarch::setuptools-75.8.2-pyhff2d567_0
tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1
tzdata conda-forge/noarch::tzdata-2025b-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
xz conda-forge/osx-64::xz-5.6.4-h357f2ed_0
xz-gpl-tools conda-forge/osx-64::xz-gpl-tools-5.6.4-h357f2ed_0
xz-tools conda-forge/osx-64::xz-tools-5.6.4-hd471939_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working...
basilisk.Rcheck/basilisk-Ex.timings
| name | user | system | elapsed | |
| BasiliskEnvironment-class | 0.005 | 0.001 | 0.007 | |
| PyPiLink | 0.000 | 0.000 | 0.001 | |
| basiliskOptions | 0.000 | 0.000 | 0.001 | |
| basiliskStart | 373.821 | 65.982 | 646.055 | |
| configureBasiliskEnv | 0.001 | 0.001 | 0.000 | |
| createLocalBasiliskEnv | 183.660 | 31.698 | 262.782 | |
| listPackages | 1.080 | 0.361 | 1.729 | |
| obtainEnvironmentPath | 0.006 | 0.003 | 0.008 | |
| setupBasiliskEnv | 0.006 | 0.002 | 0.008 | |
| useBasiliskEnv | 0.849 | 0.339 | 1.244 | |