| Back to Multiple platform build/check report for BioC 3.20: simplified long | 
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This page was generated on 2025-04-02 19:36 -0400 (Wed, 02 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4764 | 
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4495 | 
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4522 | 
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4449 | 
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4426 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1443/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| OLIN 1.84.0  (landing page) Matthias Futschik 
 | nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK |  | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK |  | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK |  | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
| To the developers/maintainers of the OLIN package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OLIN.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. | 
| Package: OLIN | 
| Version: 1.84.0 | 
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:OLIN.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings OLIN_1.84.0.tar.gz | 
| StartedAt: 2025-04-01 09:02:43 -0000 (Tue, 01 Apr 2025) | 
| EndedAt: 2025-04-01 09:03:55 -0000 (Tue, 01 Apr 2025) | 
| EllapsedTime: 72.1 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: OLIN.Rcheck | 
| Warnings: 0 | 
##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:OLIN.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings OLIN_1.84.0.tar.gz
###
##############################################################################
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* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/OLIN.Rcheck’
* using R version 4.4.3 (2025-02-28)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘OLIN/DESCRIPTION’ ... OK
* this is package ‘OLIN’ version ‘1.84.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OLIN’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
  ‘marray’ ‘methods’
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to ‘convert’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Package in Depends field not imported from: ‘locfit’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ino: no visible global function definition for ‘locfit’
ino: no visible global function definition for ‘predict’
lin: no visible global function definition for ‘locfit’
lin: no visible global function definition for ‘predict’
oin: no visible global function definition for ‘gcvplot’
oin: no visible global function definition for ‘locfit’
oin: no visible global function definition for ‘predict’
olin: no visible global function definition for ‘gcv’
olin: no visible global function definition for ‘locfit’
olin: no visible global function definition for ‘predict’
Undefined global functions or variables:
  gcv gcvplot locfit predict
Consider adding
  importFrom("stats", "predict")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
       user system elapsed
olin 19.636  0.007   21.19
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.20-bioc/meat/OLIN.Rcheck/00check.log’
for details.
OLIN.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL OLIN ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.3/site-library’ * installing *source* package ‘OLIN’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OLIN)
OLIN.Rcheck/OLIN-Ex.timings
| name | user | system | elapsed | |
| anovaint | 0.101 | 0.016 | 0.119 | |
| anovapin | 0.069 | 0.004 | 0.073 | |
| anovaplate | 0.068 | 0.008 | 0.076 | |
| anovaspatial | 0.153 | 0.020 | 0.173 | |
| backgroundCorrect2 | 0.539 | 0.028 | 0.700 | |
| bas | 0.257 | 0.000 | 0.414 | |
| colorbar.mxy | 0.044 | 0.000 | 0.045 | |
| fdr.int | 0 | 0 | 0 | |
| fdr.int2 | 0 | 0 | 0 | |
| fdr.spatial | 0 | 0 | 0 | |
| fdr.spatial2 | 0 | 0 | 0 | |
| fgbg.visu | 0.096 | 0.000 | 0.096 | |
| ino | 0.307 | 0.012 | 0.320 | |
| lin | 0.735 | 0.004 | 0.740 | |
| m2v | 0.053 | 0.004 | 0.113 | |
| ma.matrix | 0.266 | 0.004 | 0.500 | |
| ma.vector | 0.409 | 0.000 | 0.409 | |
| mxy.abs.plot | 0.273 | 0.012 | 0.285 | |
| mxy.plot | 0.066 | 0.000 | 0.067 | |
| mxy2.plot | 0.052 | 0.000 | 0.053 | |
| oin | 1.032 | 0.000 | 1.044 | |
| olin | 19.636 | 0.007 | 21.190 | |
| p.int | 0 | 0 | 0 | |
| p.int2 | 0 | 0 | 0 | |
| p.spatial | 0.001 | 0.000 | 0.000 | |
| p.spatial2 | 0.000 | 0.000 | 0.001 | |
| sig.mask | 0 | 0 | 0 | |
| sigint.plot | 0 | 0 | 0 | |
| sigint.plot2 | 0 | 0 | 0 | |
| sigxy.plot | 0 | 0 | 0 | |
| sigxy.plot2 | 0 | 0 | 0 | |
| v2m | 0.052 | 0.000 | 0.052 | |