Multiple platform build/check report for BioC 3.20 - BUILD results for CINdex on kjohnson1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.3 (2025-02-28) -- "Trophy Case"	4764
palomino8	Windows Server 2022 Datacenter	x64	4.4.3 (2025-02-28 ucrt) -- "Trophy Case"	4495
merida1	macOS 12.7.5 Monterey	x86_64	4.4.3 (2025-02-28) -- "Trophy Case"	4522
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.3 (2025-02-28) -- "Trophy Case"	4449
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.4.3 (2025-02-28) -- "Trophy Case"	4426
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for CINdex on kjohnson1

To the developers/maintainers of the CINdex package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CINdex.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: CINdex

Version: 1.34.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CINdex

StartedAt: 2025-03-31 20:42:31 -0400 (Mon, 31 Mar 2025)

EndedAt: 2025-03-31 20:46:41 -0400 (Mon, 31 Mar 2025)

EllapsedTime: 250.8 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CINdex
###
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* checking for file ‘CINdex/DESCRIPTION’ ... OK
* preparing ‘CINdex’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘HowToDownloadCytobandInfo.Rmd’ using rmarkdown
--- finished re-building ‘HowToDownloadCytobandInfo.Rmd’

--- re-building ‘PrepareInputData.Rmd’ using rmarkdown

Quitting from PrepareInputData.Rmd:32-45 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'pd.genomewidesnp.6'
---
Backtrace:
    x
 1. \-base::library(pd.genomewidesnp.6)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'PrepareInputData.Rmd' failed with diagnostics:
there is no package called 'pd.genomewidesnp.6'
--- failed re-building ‘PrepareInputData.Rmd’

--- re-building ‘CINdex.Rnw’ using knitr
2025-03-31 20:45:39.633 R[27293:338347711] XType: Using static font registry.
--- finished re-building ‘CINdex.Rnw’

SUMMARY: processing the following file failed:
  ‘PrepareInputData.Rmd’

Error: Vignette re-building failed.
Execution halted