| Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-10-18 20:40 -0400 (Fri, 18 Oct 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4763 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4500 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4530 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4480 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2094/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Structstrings 1.20.0 (landing page) Felix G.M. Ernst
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | WARNINGS | NA | |||||||||
|
To the developers/maintainers of the Structstrings package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Structstrings.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: Structstrings |
| Version: 1.20.0 |
| Command: rm -rf Structstrings.buildbin-libdir && mkdir Structstrings.buildbin-libdir && E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL --build --library=Structstrings.buildbin-libdir Structstrings_1.20.0.tar.gz |
| StartedAt: 2024-10-17 08:44:30 -0400 (Thu, 17 Oct 2024) |
| EndedAt: 2024-10-17 08:45:41 -0400 (Thu, 17 Oct 2024) |
| EllapsedTime: 70.8 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: Structstrings_1.20.0.zip |
| PackageFileSize: 805.2 KiB |
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### Running command:
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### rm -rf Structstrings.buildbin-libdir && mkdir Structstrings.buildbin-libdir && E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL --build --library=Structstrings.buildbin-libdir Structstrings_1.20.0.tar.gz
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* installing *source* package 'Structstrings' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
gcc -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.19-bioc/R/library/IRanges/include' -I'E:/biocbuild/bbs-3.19-bioc/R/library/S4Vectors/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c DotBracketDataFrame_class.c -o DotBracketDataFrame_class.o
DotBracketDataFrame_class.c: In function 'get_base_pairing_per_char_pair':
DotBracketDataFrame_class.c:40:29: warning: format '%s' expects argument of type 'char *', but argument 2 has type 'int' [-Wformat=]
40 | error("unbalanced '%s%s' brackets in dot bracket structure", bracket_open, bracket_close);
| ~^ ~~~~~~~~~~~~
| | |
| char * int
| %d
DotBracketDataFrame_class.c:40:31: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'int' [-Wformat=]
40 | error("unbalanced '%s%s' brackets in dot bracket structure", bracket_open, bracket_close);
| ~^ ~~~~~~~~~~~~~
| | |
| char * int
| %d
DotBracketDataFrame_class.c:52:25: warning: format '%s' expects argument of type 'char *', but argument 2 has type 'int' [-Wformat=]
52 | error("unbalanced '%s%s' brackets in dot bracket structure", bracket_open, bracket_close);
| ~^ ~~~~~~~~~~~~
| | |
| char * int
| %d
DotBracketDataFrame_class.c:52:27: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'int' [-Wformat=]
52 | error("unbalanced '%s%s' brackets in dot bracket structure", bracket_open, bracket_close);
| ~^ ~~~~~~~~~~~~~
| | |
| char * int
| %d
gcc -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.19-bioc/R/library/IRanges/include' -I'E:/biocbuild/bbs-3.19-bioc/R/library/S4Vectors/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c IRanges_stubs.c -o IRanges_stubs.o
gcc -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.19-bioc/R/library/IRanges/include' -I'E:/biocbuild/bbs-3.19-bioc/R/library/S4Vectors/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c R_init_Structstrings.c -o R_init_Structstrings.o
gcc -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.19-bioc/R/library/IRanges/include' -I'E:/biocbuild/bbs-3.19-bioc/R/library/S4Vectors/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.19-bioc/R/library/IRanges/include' -I'E:/biocbuild/bbs-3.19-bioc/R/library/S4Vectors/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utils.c -o utils.o
gcc -shared -s -static-libgcc -o Structstrings.dll tmp.def DotBracketDataFrame_class.o IRanges_stubs.o R_init_Structstrings.o S4Vectors_stubs.o utils.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lR
installing to E:/biocbuild/bbs-3.19-bioc/meat/Structstrings.buildbin-libdir/00LOCK-Structstrings/00new/Structstrings/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'Structstrings' as Structstrings_1.20.0.zip
* DONE (Structstrings)