Andrea Gobbi
| Snapshot Date: 2024-06-26 14:00 -0400 (Wed, 26 Jun 2024) |
| git_url: https://git.bioconductor.org/packages/BiRewire |
| git_branch: RELEASE_3_19 |
| git_last_commit: a8b3eb6 |
| git_last_commit_date: 2024-04-30 10:33:26 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-06-28 17:41 -0400 (Fri, 28 Jun 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4760 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4494 |
| merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4508 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4466 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4362 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 223/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BiRewire 3.36.0 (landing page) Andrea Gobbi
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
|
To the developers/maintainers of the BiRewire package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiRewire.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: BiRewire |
| Version: 3.36.0 |
| Command: F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:BiRewire.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings BiRewire_3.36.0.tar.gz |
| StartedAt: 2024-06-26 23:32:33 -0400 (Wed, 26 Jun 2024) |
| EndedAt: 2024-06-26 23:35:34 -0400 (Wed, 26 Jun 2024) |
| EllapsedTime: 180.5 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: BiRewire.Rcheck |
| Warnings: 1 |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:BiRewire.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings BiRewire_3.36.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.19-bioc/meat/BiRewire.Rcheck'
* using R version 4.4.0 (2024-04-24 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'BiRewire/DESCRIPTION' ... OK
* this is package 'BiRewire' version '3.36.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BiRewire' can be installed ... WARNING
Found the following significant warnings:
BiRewire.c:149:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
BiRewire.c:221:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
BiRewire.c:229:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
BiRewire.c:280:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
BiRewire.c:332:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
BiRewire.c:339:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
BiRewire.c:402:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
BiRewire.c:454:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
BiRewire.c:461:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
BiRewire.c:588:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
BiRewire.c:652:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
BiRewire.c:737:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
BiRewire.c:844:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
BiRewire.c:893:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
BiRewire.c:962:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
BiRewire.c:1066:30: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
BiRewire.c:1096:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
BiRewire.c:1144:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
BiRewire.c:1149:30: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
BiRewire.c:1183:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
interface.c:105:25: warning: too many arguments for format [-Wformat-extra-args]
interface.c:147:25: warning: too many arguments for format [-Wformat-extra-args]
interface.c:252:25: warning: too many arguments for format [-Wformat-extra-args]
interface.c:296:25: warning: too many arguments for format [-Wformat-extra-args]
See 'F:/biocbuild/bbs-3.19-bioc/meat/BiRewire.Rcheck/00install.out' for details.
* used C compiler: 'gcc.exe (GCC) 13.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
birewire.analysis.bipartite: no visible binding for global variable
'sd'
birewire.analysis.bipartite: no visible global function definition for
'qt'
birewire.analysis.bipartite: no visible global function definition for
'par'
birewire.analysis.bipartite: no visible global function definition for
'polygon'
birewire.analysis.bipartite: no visible global function definition for
'lines'
birewire.analysis.bipartite: no visible global function definition for
'abline'
birewire.analysis.bipartite: no visible global function definition for
'legend'
birewire.analysis.dsg: no visible global function definition for
'dev.off'
birewire.analysis.dsg: no visible binding for global variable 'sd'
birewire.analysis.dsg: no visible global function definition for 'qt'
birewire.analysis.dsg: no visible global function definition for
'polygon'
birewire.analysis.dsg: no visible global function definition for
'lines'
birewire.analysis.dsg: no visible global function definition for
'abline'
birewire.analysis.dsg: no visible global function definition for
'legend'
birewire.analysis.undirected: no visible binding for global variable
'sd'
birewire.analysis.undirected: no visible global function definition for
'qt'
birewire.analysis.undirected: no visible global function definition for
'par'
birewire.analysis.undirected: no visible global function definition for
'polygon'
birewire.analysis.undirected: no visible global function definition for
'lines'
birewire.analysis.undirected: no visible global function definition for
'abline'
birewire.analysis.undirected: no visible global function definition for
'legend'
birewire.load.dsg: no visible global function definition for
'read.table'
birewire.sampler.bipartite: no visible global function definition for
'write.table'
birewire.sampler.undirected: no visible global function definition for
'write.table'
birewire.save.dsg: no visible global function definition for
'write.table'
birewire.visual.monitoring.bipartite: no visible global function
definition for 'par'
birewire.visual.monitoring.bipartite: no visible global function
definition for 'colorRampPalette'
birewire.visual.monitoring.bipartite: no visible global function
definition for 'text'
birewire.visual.monitoring.dsg: no visible global function definition
for 'par'
birewire.visual.monitoring.dsg: no visible global function definition
for 'colorRampPalette'
birewire.visual.monitoring.dsg: no visible global function definition
for 'text'
birewire.visual.monitoring.undirected: no visible global function
definition for 'par'
birewire.visual.monitoring.undirected: no visible global function
definition for 'colorRampPalette'
birewire.visual.monitoring.undirected: no visible global function
definition for 'text'
Undefined global functions or variables:
abline colorRampPalette dev.off legend lines par polygon qt
read.table sd text write.table
Consider adding
importFrom("grDevices", "colorRampPalette", "dev.off")
importFrom("graphics", "abline", "legend", "lines", "par", "polygon",
"text")
importFrom("stats", "qt", "sd")
importFrom("utils", "read.table", "write.table")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'F:/biocbuild/bbs-3.19-bioc/R/library/BiRewire/libs/x64/BiRewire.dll':
Found '_exit', possibly from '_exit' (C)
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking sizes of PDF files under 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
birewire.analysis.undirected 61.06 0.07 63.43
birewire.visual.monitoring.dsg 21.04 0.42 21.45
birewire.visual.monitoring.undirected 6.76 0.65 7.42
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'runTests.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
'F:/biocbuild/bbs-3.19-bioc/meat/BiRewire.Rcheck/00check.log'
for details.
BiRewire.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL BiRewire
###
##############################################################################
##############################################################################
* installing to library 'F:/biocbuild/bbs-3.19-bioc/R/library'
* installing *source* package 'BiRewire' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
gcc -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BiRewire.c -o BiRewire.o
BiRewire.c: In function 'analysis':
BiRewire.c:149:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
149 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c: In function 'analysis_ex':
BiRewire.c:221:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
221 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c:229:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
229 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c: In function 'rewire_bipartite':
BiRewire.c:280:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
280 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c: In function 'rewire_bipartite_ex':
BiRewire.c:332:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
332 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c:339:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
339 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c: In function 'rewire_sparse_bipartite':
BiRewire.c:402:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
402 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c: In function 'rewire_sparse_bipartite_ex':
BiRewire.c:454:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
454 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c:461:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
461 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c: In function 'analysis_undirected':
BiRewire.c:588:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
588 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c: In function 'analysis_undirected_ex':
BiRewire.c:652:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
652 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c:737:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
737 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c: In function 'rewire':
BiRewire.c:844:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
844 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c: In function 'rewire_ex':
BiRewire.c:893:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
893 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c:962:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
962 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c: In function 'rewire_sparse':
BiRewire.c:1066:30: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
1066 | if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) {
| ~^~~
BiRewire.c:1096:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
1096 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c: In function 'rewire_sparse_ex':
BiRewire.c:1144:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
1144 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
BiRewire.c:1149:30: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
1149 | if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) {
| ~^~~
BiRewire.c:1183:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
1183 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long long int}
| %lld
gcc -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c interface.c -o interface.o
interface.c: In function 'R_rewire_bipartite':
interface.c:105:25: warning: too many arguments for format [-Wformat-extra-args]
105 | warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
interface.c: In function 'R_rewire_sparse_bipartite':
interface.c:147:25: warning: too many arguments for format [-Wformat-extra-args]
147 | warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
interface.c: In function 'R_rewire':
interface.c:252:25: warning: too many arguments for format [-Wformat-extra-args]
252 | warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
interface.c: In function 'R_rewire_sparse':
interface.c:296:25: warning: too many arguments for format [-Wformat-extra-args]
296 | warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -shared -s -static-libgcc -o BiRewire.dll tmp.def BiRewire.o interface.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.19-bioc/R/library/00LOCK-BiRewire/00new/BiRewire/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BiRewire)
BiRewire.Rcheck/tests/runTests.Rout
R version 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> require(BiRewire) || stop("unable to load MyPackage")
Loading required package: BiRewire
Loading required package: igraph
Attaching package: 'igraph'
The following objects are masked from 'package:stats':
decompose, spectrum
The following object is masked from 'package:base':
union
Loading required package: slam
Loading required package: Rtsne
Loading required package: Matrix
[1] TRUE
> BiocGenerics:::testPackage('BiRewire')
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[1] "K= 1"
[1] "K= 5"
[1] "K= 100"
[1] "K= n"
[1] "K= 1"
[1] "K= 5"
[1] "K= 100"
[1] "K= n"
RUNIT TEST PROTOCOL -- Wed Jun 26 23:35:22 2024
***********************************************
Number of test functions: 8
Number of errors: 0
Number of failures: 0
1 Test Suite :
BiRewire RUnit Tests - 8 test functions, 0 errors, 0 failures
Number of test functions: 8
Number of errors: 0
Number of failures: 0
Warning messages:
1: `get.incidence()` was deprecated in igraph 2.0.0.
ℹ Please use `as_biadjacency_matrix()` instead.
2: `is.igraph()` was deprecated in igraph 2.0.0.
ℹ Please use `is_igraph()` instead.
3: `get.adjacency()` was deprecated in igraph 2.0.0.
ℹ Please use `as_adjacency_matrix()` instead.
>
> proc.time()
user system elapsed
11.37 1.35 13.26
BiRewire.Rcheck/BiRewire-Ex.timings
| name | user | system | elapsed | |
| birewire.analysis.bipartite | 0.22 | 0.28 | 0.52 | |
| birewire.analysis.dsg | 0.11 | 0.05 | 0.19 | |
| birewire.analysis.undirected | 61.06 | 0.07 | 63.43 | |
| birewire.bipartite.from.incidence | 0.02 | 0.02 | 0.03 | |
| birewire.build.dsg | 0.02 | 0.00 | 0.02 | |
| birewire.induced.bipartite | 0.00 | 0.02 | 0.02 | |
| birewire.rewire.bipartite | 0.00 | 0.03 | 0.03 | |
| birewire.rewire.bipartite.and.projections | 0.40 | 0.01 | 0.42 | |
| birewire.rewire.dsg | 0.00 | 0.02 | 0.01 | |
| birewire.rewire.undirected | 0.77 | 0.09 | 0.86 | |
| birewire.similarity | 0.03 | 0.00 | 0.04 | |
| birewire.similarity.dsg | 0.05 | 0.02 | 0.06 | |
| birewire.visual.monitoring.bipartite | 1.46 | 0.08 | 1.64 | |
| birewire.visual.monitoring.dsg | 21.04 | 0.42 | 21.45 | |
| birewire.visual.monitoring.undirected | 6.76 | 0.65 | 7.42 | |