##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:randRotation.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings randRotation_1.11.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/randRotation.Rcheck'
* using R Under development (unstable) (2022-12-25 r83502 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 10.4.0
    GNU Fortran (GCC) 10.4.0
* running under: Windows Server x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'randRotation/DESCRIPTION' ... OK
* this is package 'randRotation' version '1.11.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'randRotation' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
     user system elapsed
pFdr 5.76   0.28    6.04
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 ERROR
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
  sort(pFdr(res1, "fdr.qu"))[1:10] not equal to c(...).
  9/10 mismatches (average diff: 0.0496)
  [1] 0.870 - 0.470 ==  4.00e-01
  [2] 0.940 - 0.960 == -2.00e-02
  [3] 0.993 - 0.972 ==  2.14e-02
  [4] 0.998 - 0.994 ==  4.80e-03
  [5] 1.000 - 1.000 ==  2.31e-04
  [6] 1.000 - 1.000 == -7.13e-07
  [7] 1.000 - 1.000 ==  4.54e-06
  [8] 1.000 - 1.000 ==  1.36e-06
  [9] 1.000 - 1.000 == -1.20e-07
  
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 16 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR
See
  'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/randRotation.Rcheck/00check.log'
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL randRotation
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'randRotation' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
Loading required namespace: randRotation
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (randRotation)

R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(randRotation)
> 
> test_check("randRotation")
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 16 ]

══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_rotateStat_pFdr.R:32'): Test execution of rotateStat (including parallel computation mode), pFdr with "fdr.q" and "fdr.qu" ──
sort(pFdr(res1))[1:10] not equal to c(...).
10/10 mismatches (average diff: 0.00198)
[1] 0.0088 - 0.0048 ==  0.0040
[2] 0.0095 - 0.0097 == -0.0002
[3] 0.0151 - 0.0144 ==  0.0007
[4] 0.0197 - 0.0199 == -0.0002
[5] 0.0259 - 0.0287 == -0.0028
[6] 0.0268 - 0.0294 == -0.0026
[7] 0.0362 - 0.0325 ==  0.0037
[8] 0.0394 - 0.0367 ==  0.0027
[9] 0.0457 - 0.0430 ==  0.0027
...
── Failure ('test_rotateStat_pFdr.R:33'): Test execution of rotateStat (including parallel computation mode), pFdr with "fdr.q" and "fdr.qu" ──
sort(pFdr(res1, "fdr.q"))[1:10] not equal to c(...).
9/10 mismatches (average diff: 0.0496)
[1] 0.870 - 0.470 ==  4.00e-01
[2] 0.940 - 0.960 == -2.00e-02
[3] 0.993 - 0.972 ==  2.14e-02
[4] 0.998 - 0.994 ==  4.80e-03
[5] 1.000 - 1.000 ==  2.31e-04
[6] 1.000 - 1.000 == -7.13e-07
[7] 1.000 - 1.000 ==  4.54e-06
[8] 1.000 - 1.000 ==  1.36e-06
[9] 1.000 - 1.000 == -1.20e-07
── Failure ('test_rotateStat_pFdr.R:34'): Test execution of rotateStat (including parallel computation mode), pFdr with "fdr.q" and "fdr.qu" ──
sort(pFdr(res1, "fdr.qu"))[1:10] not equal to c(...).
9/10 mismatches (average diff: 0.0496)
[1] 0.870 - 0.470 ==  4.00e-01
[2] 0.940 - 0.960 == -2.00e-02
[3] 0.993 - 0.972 ==  2.14e-02
[4] 0.998 - 0.994 ==  4.80e-03
[5] 1.000 - 1.000 ==  2.31e-04
[6] 1.000 - 1.000 == -7.13e-07
[7] 1.000 - 1.000 ==  4.54e-06
[8] 1.000 - 1.000 ==  1.36e-06
[9] 1.000 - 1.000 == -1.20e-07

[ FAIL 3 | WARN 0 | SKIP 0 | PASS 16 ]
Error: Test failures
Execution halted