Back to Build/check report for BioC 3.17
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

This page was generated on 2023-01-02 09:00:39 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for motifbreakR on palomino5


To the developers/maintainers of the motifbreakR package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1238/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
motifbreakR 2.13.0  (landing page)
Simon Gert Coetzee
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/motifbreakR
git_branch: master
git_last_commit: 96f78d9
git_last_commit_date: 2022-11-01 11:12:10 -0500 (Tue, 01 Nov 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped

Summary

Package: motifbreakR
Version: 2.13.0
Command: chmod a+r motifbreakR -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data motifbreakR
StartedAt: 2022-12-28 19:11:17 -0500 (Wed, 28 Dec 2022)
EndedAt: 2022-12-28 19:12:36 -0500 (Wed, 28 Dec 2022)
EllapsedTime: 78.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r motifbreakR -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data motifbreakR
###
##############################################################################
##############################################################################


* checking for file 'motifbreakR/DESCRIPTION' ... OK
* preparing 'motifbreakR':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'motifbreakR-vignette.Rmd' using rmarkdown
Quitting from lines 105-112 (motifbreakR-vignette.Rmd) 
Error: processing vignette 'motifbreakR-vignette.Rmd' failed with diagnostics:
there is no package called 'SNPlocs.Hsapiens.dbSNP142.GRCh37'
--- failed re-building 'motifbreakR-vignette.Rmd'

SUMMARY: processing the following file failed:
  'motifbreakR-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted