| Back to Build/check report for BioC 3.17 |
|
This page was generated on 2023-01-02 09:00:54 -0500 (Mon, 02 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the Travel package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2062/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Travel 1.7.0 (landing page) Jiefei Wang
| palomino5 | Windows Server 2022 Datacenter / x64 | ERROR | ERROR | skipped | skipped | ||||||||
| Package: Travel |
| Version: 1.7.0 |
| Command: chmod a+r Travel -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data Travel |
| StartedAt: 2022-12-28 21:02:35 -0500 (Wed, 28 Dec 2022) |
| EndedAt: 2022-12-28 21:03:05 -0500 (Wed, 28 Dec 2022) |
| EllapsedTime: 30.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### chmod a+r Travel -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data Travel
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* checking for file 'Travel/DESCRIPTION' ... OK
* preparing 'Travel':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package 'Travel' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
using C++11
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.1\include" -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Cpp_interface.cpp -o Cpp_interface.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.1\include" -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.1\include" -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c altfile_operations.cpp -o altfile_operations.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.1\include" -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c altmmap_operations.cpp -o altmmap_operations.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.1\include" -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c altrep_manager.cpp -o altrep_manager.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.1\include" -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c class_Cache_block.cpp -o class_Cache_block.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.1\include" -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c class_Filesystem_cache_copier.cpp -o class_Filesystem_cache_copier.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.1\include" -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c class_Filesystem_file_data.cpp -o class_Filesystem_file_data.o
In file included from class_Filesystem_file_data.h:5,
from class_Filesystem_file_data.cpp:1:
class_Cache_block.h:10:5: error: 'size_t' does not name a type
10 | size_t size;
| ^~~~~~
class_Cache_block.h:1:1: note: 'size_t' is defined in header '<cstddef>'; did you forget to '#include <cstddef>'?
+++ |+#include <cstddef>
1 | #ifndef HEADER_CACHE_BLOCK
class_Cache_block.h:11:5: error: 'size_t' does not name a type
11 | size_t *counter = nullptr;
| ^~~~~~
class_Cache_block.h:11:5: note: 'size_t' is defined in header '<cstddef>'; did you forget to '#include <cstddef>'?
class_Cache_block.h:14:23: error: expected ')' before 'size'
14 | Cache_block(size_t size);
| ~ ^~~~~
| )
class_Cache_block.h:21:5: error: 'size_t' does not name a type
21 | size_t use_count() const;
| ^~~~~~
class_Cache_block.h:21:5: note: 'size_t' is defined in header '<cstddef>'; did you forget to '#include <cstddef>'?
class_Cache_block.h:23:5: error: 'size_t' does not name a type
23 | size_t get_size() const;
| ^~~~~~
class_Cache_block.h:23:5: note: 'size_t' is defined in header '<cstddef>'; did you forget to '#include <cstddef>'?
class_Cache_block.h:27:5: error: 'size_t' does not name a type
27 | size_t get_serialize_size() const;
| ^~~~~~
class_Cache_block.h:27:5: note: 'size_t' is defined in header '<cstddef>'; did you forget to '#include <cstddef>'?
class_Filesystem_file_data.cpp: In member function 'size_t Filesystem_file_data::get_serialize_size()':
class_Filesystem_file_data.cpp:70:26: error: 'const class Cache_block' has no member named 'get_serialize_size'
70 | size += i.second.get_serialize_size();
| ^~~~~~~~~~~~~~~~~~
class_Filesystem_file_data.cpp: In member function 'void Filesystem_file_data::serialize(void*)':
class_Filesystem_file_data.cpp:92:39: error: 'const class Cache_block' has no member named 'get_serialize_size'
92 | size_t buffer_size = i.second.get_serialize_size();
| ^~~~~~~~~~~~~~~~~~
class_Filesystem_file_data.cpp: In member function 'void Filesystem_cache_index_iterator::compute_block_info()':
class_Filesystem_file_data.cpp:177:39: error: 'class Cache_block' has no member named 'get_size'
177 | block_length = block_iter->second.get_size() / type_size;
| ^~~~~~~~
make: *** [F:/biocbuild/bbs-3.17-bioc/R/etc/x64/Makeconf:264: class_Filesystem_file_data.o] Error 1
ERROR: compilation failed for package 'Travel'
* removing 'F:/biocbuild/bbs-3.17-bioc-rtools43/tmpdir/RtmpqKJ2WU/Rinstc6477a632a9/Travel'
-----------------------------------
ERROR: package installation failed