| Back to Build/check report for BioC 3.17 |
|
This page was generated on 2023-01-02 09:00:46 -0500 (Mon, 02 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the Rcpi package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1598/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Rcpi 1.35.0 (landing page) Nan Xiao
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ||||||||
| Package: Rcpi |
| Version: 1.35.0 |
| Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:Rcpi.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings Rcpi_1.35.0.tar.gz |
| StartedAt: 2022-12-29 02:39:54 -0500 (Thu, 29 Dec 2022) |
| EndedAt: 2022-12-29 02:41:56 -0500 (Thu, 29 Dec 2022) |
| EllapsedTime: 122.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: Rcpi.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:Rcpi.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings Rcpi_1.35.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/Rcpi.Rcheck'
* using R Under development (unstable) (2022-12-25 r83502 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
gcc.exe (GCC) 10.4.0
GNU Fortran (GCC) 10.4.0
* running under: Windows Server x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'Rcpi/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Rcpi' version '1.35.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.travis.yml
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'Rcpi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'runTests.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/Rcpi.Rcheck/00check.log'
for details.
Rcpi.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL Rcpi ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'Rcpi' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rcpi)
Rcpi.Rcheck/tests/runTests.Rout
R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('Rcpi')
RUNIT TEST PROTOCOL -- Thu Dec 29 02:41:39 2022
***********************************************
Number of test functions: 11
Number of errors: 0
Number of failures: 0
1 Test Suite :
Rcpi RUnit Tests - 11 test functions, 0 errors, 0 failures
Number of test functions: 11
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
4.93 0.65 4.76
Rcpi.Rcheck/Rcpi-Ex.timings
| name | user | system | elapsed | |
| AA2DACOR | 0 | 0 | 0 | |
| AA3DMoRSE | 0 | 0 | 0 | |
| AAACF | 0 | 0 | 0 | |
| AABLOSUM100 | 0 | 0 | 0 | |
| AABLOSUM45 | 0 | 0 | 0 | |
| AABLOSUM50 | 0 | 0 | 0 | |
| AABLOSUM62 | 0.00 | 0.02 | 0.02 | |
| AABLOSUM80 | 0 | 0 | 0 | |
| AABurden | 0 | 0 | 0 | |
| AACPSA | 0.00 | 0.01 | 0.02 | |
| AAConn | 0 | 0 | 0 | |
| AAConst | 0 | 0 | 0 | |
| AADescAll | 0.00 | 0.02 | 0.01 | |
| AAEdgeAdj | 0 | 0 | 0 | |
| AAEigIdx | 0 | 0 | 0 | |
| AAFGC | 0.02 | 0.00 | 0.02 | |
| AAGETAWAY | 0 | 0 | 0 | |
| AAGeom | 0 | 0 | 0 | |
| AAInfo | 0 | 0 | 0 | |
| AAMOE2D | 0 | 0 | 0 | |
| AAMOE3D | 0.01 | 0.00 | 0.02 | |
| AAMetaInfo | 0 | 0 | 0 | |
| AAMolProp | 0 | 0 | 0 | |
| AAPAM120 | 0.00 | 0.02 | 0.01 | |
| AAPAM250 | 0 | 0 | 0 | |
| AAPAM30 | 0 | 0 | 0 | |
| AAPAM40 | 0.00 | 0.02 | 0.02 | |
| AAPAM70 | 0 | 0 | 0 | |
| AARDF | 0 | 0 | 0 | |
| AARandic | 0.02 | 0.00 | 0.02 | |
| AATopo | 0 | 0 | 0 | |
| AATopoChg | 0 | 0 | 0 | |
| AAWHIM | 0 | 0 | 0 | |
| AAWalk | 0 | 0 | 0 | |
| AAindex | 0.01 | 0.00 | 0.02 | |
| OptAA3d | 0 | 0 | 0 | |
| acc | 0.02 | 0.00 | 0.01 | |
| calcDrugFPSim | 1.92 | 0.64 | 1.14 | |
| calcDrugMCSSim | 0 | 0 | 0 | |
| calcParProtGOSim | 0 | 0 | 0 | |
| calcParProtSeqSim | 0.03 | 0.00 | 0.02 | |
| calcTwoProtGOSim | 0 | 0 | 0 | |
| calcTwoProtSeqSim | 0 | 0 | 0 | |
| checkProt | 0 | 0 | 0 | |
| convMolFormat | 0 | 0 | 0 | |
| extractDrugAIO | 0 | 0 | 0 | |
| extractDrugALOGP | 0 | 0 | 0 | |
| extractDrugAminoAcidCount | 0 | 0 | 0 | |
| extractDrugApol | 0 | 0 | 0 | |
| extractDrugAromaticAtomsCount | 0 | 0 | 0 | |
| extractDrugAromaticBondsCount | 0 | 0 | 0 | |
| extractDrugAtomCount | 0 | 0 | 0 | |
| extractDrugAutocorrelationCharge | 0 | 0 | 0 | |
| extractDrugAutocorrelationMass | 0 | 0 | 0 | |
| extractDrugAutocorrelationPolarizability | 0 | 0 | 0 | |
| extractDrugBCUT | 0 | 0 | 0 | |
| extractDrugBPol | 0 | 0 | 0 | |
| extractDrugBondCount | 0.05 | 0.00 | 0.02 | |
| extractDrugCPSA | 0 | 0 | 0 | |
| extractDrugCarbonTypes | 0 | 0 | 0 | |
| extractDrugChiChain | 0 | 0 | 0 | |
| extractDrugChiCluster | 0 | 0 | 0 | |
| extractDrugChiPath | 0 | 0 | 0 | |
| extractDrugChiPathCluster | 0 | 0 | 0 | |
| extractDrugDescOB | 0.02 | 0.00 | 0.01 | |
| extractDrugECI | 0 | 0 | 0 | |
| extractDrugEstate | 0 | 0 | 0 | |
| extractDrugEstateComplete | 0 | 0 | 0 | |
| extractDrugExtended | 0 | 0 | 0 | |
| extractDrugExtendedComplete | 0 | 0 | 0 | |
| extractDrugFMF | 0 | 0 | 0 | |
| extractDrugFragmentComplexity | 0 | 0 | 0 | |
| extractDrugGraph | 0 | 0 | 0 | |
| extractDrugGraphComplete | 0 | 0 | 0 | |
| extractDrugGravitationalIndex | 0 | 0 | 0 | |
| extractDrugHBondAcceptorCount | 0 | 0 | 0 | |
| extractDrugHBondDonorCount | 0 | 0 | 0 | |
| extractDrugHybridization | 0 | 0 | 0 | |
| extractDrugHybridizationComplete | 0 | 0 | 0 | |
| extractDrugHybridizationRatio | 0 | 0 | 0 | |
| extractDrugIPMolecularLearning | 0 | 0 | 0 | |
| extractDrugKR | 0 | 0 | 0 | |
| extractDrugKRComplete | 0 | 0 | 0 | |
| extractDrugKappaShapeIndices | 0 | 0 | 0 | |
| extractDrugKierHallSmarts | 0 | 0 | 0 | |
| extractDrugLargestChain | 0 | 0 | 0 | |
| extractDrugLargestPiSystem | 0 | 0 | 0 | |
| extractDrugLengthOverBreadth | 0 | 0 | 0 | |
| extractDrugLongestAliphaticChain | 0 | 0 | 0 | |
| extractDrugMACCS | 0 | 0 | 0 | |
| extractDrugMACCSComplete | 0 | 0 | 0 | |
| extractDrugMDE | 0 | 0 | 0 | |
| extractDrugMannholdLogP | 0 | 0 | 0 | |
| extractDrugMomentOfInertia | 0 | 0 | 0 | |
| extractDrugOBFP2 | 0 | 0 | 0 | |
| extractDrugOBFP3 | 0.01 | 0.00 | 0.01 | |
| extractDrugOBFP4 | 0 | 0 | 0 | |
| extractDrugOBMACCS | 0.02 | 0.00 | 0.02 | |
| extractDrugPetitjeanNumber | 0 | 0 | 0 | |
| extractDrugPetitjeanShapeIndex | 0 | 0 | 0 | |
| extractDrugPubChem | 0 | 0 | 0 | |
| extractDrugPubChemComplete | 0 | 0 | 0 | |
| extractDrugRotatableBondsCount | 0 | 0 | 0 | |
| extractDrugRuleOfFive | 0 | 0 | 0 | |
| extractDrugShortestPath | 0 | 0 | 0 | |
| extractDrugShortestPathComplete | 0 | 0 | 0 | |
| extractDrugStandard | 0 | 0 | 0 | |
| extractDrugStandardComplete | 0 | 0 | 0 | |
| extractDrugTPSA | 0 | 0 | 0 | |
| extractDrugVABC | 0 | 0 | 0 | |
| extractDrugVAdjMa | 0 | 0 | 0 | |
| extractDrugWHIM | 0 | 0 | 0 | |
| extractDrugWeight | 0 | 0 | 0 | |
| extractDrugWeightedPath | 0 | 0 | 0 | |
| extractDrugWienerNumbers | 0 | 0 | 0 | |
| extractDrugXLogP | 0.01 | 0.00 | 0.02 | |
| extractDrugZagrebIndex | 0 | 0 | 0 | |
| extractPCMBLOSUM | 0 | 0 | 0 | |
| extractPCMDescScales | 0.02 | 0.00 | 0.02 | |
| extractPCMFAScales | 0.02 | 0.00 | 0.01 | |
| extractPCMMDSScales | 0.00 | 0.02 | 0.02 | |
| extractPCMPropScales | 0.01 | 0.00 | 0.01 | |
| extractPCMScales | 0.02 | 0.00 | 0.02 | |
| extractProtAAC | 0 | 0 | 0 | |
| extractProtAPAAC | 0.54 | 0.01 | 0.56 | |
| extractProtCTDC | 0 | 0 | 0 | |
| extractProtCTDD | 0.02 | 0.00 | 0.02 | |
| extractProtCTDT | 0 | 0 | 0 | |
| extractProtCTriad | 0.06 | 0.02 | 0.07 | |
| extractProtDC | 0 | 0 | 0 | |
| extractProtGeary | 0.1 | 0.0 | 0.1 | |
| extractProtMoran | 0.37 | 0.01 | 0.39 | |
| extractProtMoreauBroto | 0.08 | 0.00 | 0.08 | |
| extractProtPAAC | 0.37 | 0.03 | 0.40 | |
| extractProtPSSM | 0 | 0 | 0 | |
| extractProtPSSMAcc | 0 | 0 | 0 | |
| extractProtPSSMFeature | 0 | 0 | 0 | |
| extractProtQSO | 0.48 | 0.00 | 0.48 | |
| extractProtSOCN | 0.46 | 0.00 | 0.46 | |
| extractProtTC | 0.06 | 0.04 | 0.09 | |
| getCPI | 0 | 0 | 0 | |
| getDrug | 0 | 0 | 0 | |
| getFASTAFromKEGG | 0 | 0 | 0 | |
| getFASTAFromUniProt | 0 | 0 | 0 | |
| getMolFromCAS | 0 | 0 | 0 | |
| getMolFromChEMBL | 0 | 0 | 0 | |
| getMolFromDrugBank | 0 | 0 | 0 | |
| getMolFromKEGG | 0 | 0 | 0 | |
| getMolFromPubChem | 0 | 0 | 0 | |
| getPDBFromRCSBPDB | 0 | 0 | 0 | |
| getPPI | 0 | 0 | 0 | |
| getProt | 0 | 0 | 0 | |
| getSeqFromKEGG | 0 | 0 | 0 | |
| getSeqFromRCSBPDB | 0 | 0 | 0 | |
| getSeqFromUniProt | 0 | 0 | 0 | |
| getSmiFromChEMBL | 0 | 0 | 0 | |
| getSmiFromDrugBank | 0 | 0 | 0 | |
| getSmiFromKEGG | 0 | 0 | 0 | |
| getSmiFromPubChem | 0 | 0 | 0 | |
| readFASTA | 0 | 0 | 0 | |
| readMolFromSDF | 0 | 0 | 0 | |
| readMolFromSmi | 0 | 0 | 0 | |
| readPDB | 0.91 | 0.00 | 0.92 | |
| searchDrug | 0 | 0 | 0 | |
| segProt | 0 | 0 | 0 | |