| Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-01-02 09:00:41 -0500 (Mon, 02 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the NormqPCR package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1346/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| NormqPCR 1.45.0 (landing page) James Perkins
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ||||||||
| Package: NormqPCR |
| Version: 1.45.0 |
| Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:NormqPCR.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings NormqPCR_1.45.0.tar.gz |
| StartedAt: 2022-12-29 01:53:19 -0500 (Thu, 29 Dec 2022) |
| EndedAt: 2022-12-29 01:54:58 -0500 (Thu, 29 Dec 2022) |
| EllapsedTime: 99.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: NormqPCR.Rcheck |
| Warnings: 0 |
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### Running command:
###
### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:NormqPCR.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings NormqPCR_1.45.0.tar.gz
###
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* using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/NormqPCR.Rcheck'
* using R Under development (unstable) (2022-12-25 r83502 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
gcc.exe (GCC) 10.4.0
GNU Fortran (GCC) 10.4.0
* running under: Windows Server x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'NormqPCR/DESCRIPTION' ... OK
* this is package 'NormqPCR' version '1.45.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'NormqPCR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
CqValues,CyclesSet: no visible binding for global variable 'l5'
Undefined global functions or variables:
l5
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
CqValues 38.06 0.31 38.44
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/NormqPCR.Rcheck/00check.log'
for details.
NormqPCR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL NormqPCR ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'NormqPCR' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NormqPCR)
NormqPCR.Rcheck/NormqPCR-Ex.timings
| name | user | system | elapsed | |
| Bladder | 0.05 | 0.00 | 0.05 | |
| BladderRepro | 0.01 | 0.00 | 0.02 | |
| Colon | 0.02 | 0.00 | 0.01 | |
| ComputeNRQs | 0.11 | 0.02 | 0.14 | |
| CqValues | 38.06 | 0.31 | 38.44 | |
| NormqPCR-package | 0 | 0 | 0 | |
| combineTechReps | 0.03 | 0.00 | 0.05 | |
| combineTechRepsSD | 0.05 | 0.00 | 0.04 | |
| deltaCt | 0.06 | 0.00 | 0.08 | |
| deltaDeltaCt | 0.08 | 0.00 | 0.08 | |
| geNorm | 0.01 | 0.02 | 0.03 | |
| geomMean | 0 | 0 | 0 | |
| makeAllNAs | 0.10 | 0.01 | 0.11 | |
| makeAllNewVal | 0.09 | 0.00 | 0.09 | |
| replaceAboveCutOff | 0.08 | 0.00 | 0.08 | |
| replaceNAs | 0.08 | 0.00 | 0.08 | |
| selectHKs | 0.03 | 0.00 | 0.03 | |
| stabMeasureM | 0.08 | 0.00 | 0.08 | |
| stabMeasureRho | 0.06 | 0.02 | 0.08 | |