| Back to Build/check report for BioC 3.17 |
|
This page was generated on 2023-01-02 09:00:33 -0500 (Mon, 02 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the HiCBricks package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 890/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HiCBricks 1.17.0 (landing page) Koustav Pal
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ||||||||
| Package: HiCBricks |
| Version: 1.17.0 |
| Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:HiCBricks.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings HiCBricks_1.17.0.tar.gz |
| StartedAt: 2022-12-29 00:28:58 -0500 (Thu, 29 Dec 2022) |
| EndedAt: 2022-12-29 00:32:09 -0500 (Thu, 29 Dec 2022) |
| EllapsedTime: 191.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HiCBricks.Rcheck |
| Warnings: 0 |
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###
### Running command:
###
### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:HiCBricks.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings HiCBricks_1.17.0.tar.gz
###
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* using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/HiCBricks.Rcheck'
* using R Under development (unstable) (2022-12-25 r83502 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
gcc.exe (GCC) 10.4.0
GNU Fortran (GCC) 10.4.0
* running under: Windows Server x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'HiCBricks/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'HiCBricks' version '1.17.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'HiCBricks' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
HiCBricks.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL HiCBricks ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'HiCBricks' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HiCBricks)
HiCBricks.Rcheck/HiCBricks-Ex.timings
| name | user | system | elapsed | |
| BrickContainer_change_experiment_name | 1.11 | 0.20 | 2.19 | |
| BrickContainer_change_output_directory | 0.79 | 0.19 | 2.50 | |
| BrickContainer_get_path_to_file | 0.88 | 0.09 | 2.06 | |
| BrickContainer_list_chromosomes | 0.81 | 0.16 | 1.60 | |
| BrickContainer_list_experiment_name | 0.77 | 0.17 | 1.76 | |
| BrickContainer_list_files | 0.78 | 0.16 | 2.22 | |
| BrickContainer_list_output_directory | 0.74 | 0.20 | 1.67 | |
| BrickContainer_list_resolutions | 0.66 | 0.20 | 1.87 | |
| BrickContainer_unlink_resolution | 1.89 | 0.36 | 3.96 | |
| Brick_add_ranges | 1.68 | 0.19 | 3.31 | |
| Brick_call_compartments | 1.19 | 0.22 | 2.75 | |
| Brick_export_to_sparse | 2.53 | 0.25 | 3.97 | |
| Brick_fetch_range_index | 0.81 | 0.11 | 1.64 | |
| Brick_fetch_row_vector | 1.44 | 0.29 | 2.92 | |
| Brick_get_bintable | 0.78 | 0.19 | 1.91 | |
| Brick_get_chrominfo | 0.77 | 0.08 | 1.57 | |
| Brick_get_entire_matrix | 1.11 | 0.19 | 2.57 | |
| Brick_get_matrix | 0.98 | 0.23 | 2.31 | |
| Brick_get_matrix_mcols | 1.07 | 0.33 | 2.36 | |
| Brick_get_matrix_within_coords | 1.28 | 0.17 | 2.83 | |
| Brick_get_ranges | 0.87 | 0.19 | 1.68 | |
| Brick_get_values_by_distance | 1.24 | 0.28 | 2.75 | |
| Brick_get_vector_values | 1.15 | 0.20 | 2.54 | |
| Brick_list_matrices | 0.74 | 0.08 | 1.96 | |
| Brick_list_matrix_mcols | 0.62 | 0.15 | 1.66 | |
| Brick_list_mcool_normalisations | 0 | 0 | 0 | |
| Brick_list_mcool_resolutions | 0 | 0 | 0 | |
| Brick_list_rangekeys | 0.78 | 0.16 | 1.79 | |
| Brick_list_ranges_mcols | 0.72 | 0.12 | 1.58 | |
| Brick_load_cis_matrix_till_distance | 1.06 | 0.18 | 2.28 | |
| Brick_load_data_from_mcool | 0 | 0 | 0 | |
| Brick_load_data_from_sparse | 0.02 | 0.00 | 0.02 | |
| Brick_load_matrix | 0.91 | 0.18 | 3.12 | |
| Brick_local_score_differentiator | 1.29 | 0.35 | 2.88 | |
| Brick_make_ranges | 0 | 0 | 0 | |
| Brick_matrix_dimensions | 0.94 | 0.18 | 2.25 | |
| Brick_matrix_exists | 0.86 | 0.14 | 2.08 | |
| Brick_matrix_filename | 0.92 | 0.16 | 2.13 | |
| Brick_matrix_isdone | 0.97 | 0.25 | 2.36 | |
| Brick_matrix_issparse | 0.94 | 0.25 | 2.20 | |
| Brick_matrix_maxdist | 0.78 | 0.18 | 2.20 | |
| Brick_matrix_minmax | 0.91 | 0.18 | 2.28 | |
| Brick_mcool_normalisation_exists | 0 | 0 | 0 | |
| Brick_rangekey_exists | 0.81 | 0.09 | 1.55 | |
| Brick_return_region_position | 0.81 | 0.17 | 2.14 | |
| Brick_vizart_plot_heatmap | 1.72 | 0.21 | 3.30 | |
| Create_many_Bricks | 0.72 | 0.07 | 1.67 | |
| Create_many_Bricks_from_mcool | 0 | 0 | 0 | |
| load_BrickContainer | 0.81 | 0.21 | 1.70 | |