| Back to Build/check report for BioC 3.17 |
|
This page was generated on 2023-01-02 09:00:28 -0500 (Mon, 02 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the ExperimentHub package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 637/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ExperimentHub 2.7.0 (landing page) Bioconductor Package Maintainer
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | ||||||||
| Package: ExperimentHub |
| Version: 2.7.0 |
| Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:ExperimentHub.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings ExperimentHub_2.7.0.tar.gz |
| StartedAt: 2022-12-28 23:42:41 -0500 (Wed, 28 Dec 2022) |
| EndedAt: 2022-12-28 23:44:16 -0500 (Wed, 28 Dec 2022) |
| EllapsedTime: 94.5 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: ExperimentHub.Rcheck |
| Warnings: 1 |
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###
### Running command:
###
### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:ExperimentHub.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings ExperimentHub_2.7.0.tar.gz
###
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* using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/ExperimentHub.Rcheck'
* using R Under development (unstable) (2022-12-25 r83502 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
gcc.exe (GCC) 10.4.0
GNU Fortran (GCC) 10.4.0
* running under: Windows Server x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'ExperimentHub/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ExperimentHub' version '2.7.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ExperimentHub' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'curl'
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
createHubAccessors : <anonymous>: no visible binding for global
variable 'title'
Undefined global functions or variables:
title
Consider adding
importFrom("graphics", "title")
to your NAMESPACE file.
* checking Rd files ... WARNING
checkRd: (5) ExperimentHub-class.Rd:70-83: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:92-95: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:96-99: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:100-103: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:104-108: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:109-115: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:116-120: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:121-126: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:127-161: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:169-173: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:174-178: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:179-185: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:186-207: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:208-216: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:217-222: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:223-227: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:228-232: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:239-243: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:244-248: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:249-260: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:261-264: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:265-268: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:269-276: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:277-284: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:285-290: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:297-301: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:302-306: \item in \describe must have non-empty label
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/ExperimentHub.Rcheck/00check.log'
for details.
ExperimentHub.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL ExperimentHub ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'ExperimentHub' ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ExperimentHub)
ExperimentHub.Rcheck/ExperimentHub-Ex.timings
| name | user | system | elapsed | |
| ExperimentHub-class | 1.46 | 0.17 | 1.70 | |
| getExperimentHubOption | 0 | 0 | 0 | |
| listResources | 0.02 | 0.00 | 0.01 | |