| Back to Mac ARM64 build report for BioC 3.17 |
|
This page was generated on 2023-10-20 09:38:06 -0400 (Fri, 20 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson2 | macOS 12.6.1 Monterey | arm64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4347 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1241/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| miRBaseConverter 1.24.0 (landing page) Taosheng Xu
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | OK | OK | OK | OK | ||||||||
|
To the developers/maintainers of the miRBaseConverter package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: miRBaseConverter |
| Version: 1.24.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:miRBaseConverter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings miRBaseConverter_1.24.0.tar.gz |
| StartedAt: 2023-10-18 07:58:41 -0400 (Wed, 18 Oct 2023) |
| EndedAt: 2023-10-18 07:59:59 -0400 (Wed, 18 Oct 2023) |
| EllapsedTime: 78.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: miRBaseConverter.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:miRBaseConverter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings miRBaseConverter_1.24.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/miRBaseConverter.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.6.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRBaseConverter/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘miRBaseConverter’ version ‘1.24.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRBaseConverter’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
miRBaseConverter.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL miRBaseConverter ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘miRBaseConverter’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (miRBaseConverter)
miRBaseConverter.Rcheck/tests/runTests.Rout
R version 4.3.1 (2023-06-16) -- "Beagle Scouts"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("miRBaseConverter")
RUNIT TEST PROTOCOL -- Wed Oct 18 07:59:45 2023
***********************************************
Number of test functions: 1
Number of errors: 0
Number of failures: 0
1 Test Suite :
miRBaseConverter RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
0.418 0.073 0.758
miRBaseConverter.Rcheck/miRBaseConverter-Ex.timings
| name | user | system | elapsed | |
| checkMiRNAAlive | 2.112 | 0.071 | 3.093 | |
| checkMiRNAFamily | 1.891 | 0.032 | 2.877 | |
| checkMiRNAVersion | 0.101 | 0.007 | 0.167 | |
| getAllMiRNAs | 0.184 | 0.007 | 0.287 | |
| getAllSpecies | 0.000 | 0.001 | 0.000 | |
| getAllVersionInfo | 0.002 | 0.001 | 0.005 | |
| getMiRNAHistory | 0.895 | 0.013 | 1.385 | |
| getMiRNASequence | 2.763 | 0.034 | 4.171 | |
| getMiRNATable | 0.002 | 0.001 | 0.006 | |
| goTo_miRBase | 2.451 | 0.025 | 3.536 | |
| goTo_miRNAFamily | 0.866 | 0.011 | 1.292 | |
| miRNATest | 0.001 | 0.001 | 0.002 | |
| miRNAVersionConvert | 2.546 | 0.038 | 3.538 | |
| miRNA_AccessionToName | 0.872 | 0.011 | 1.312 | |
| miRNA_MatureToPrecursor | 0.131 | 0.007 | 0.211 | |
| miRNA_NameToAccession | 2.067 | 0.033 | 3.111 | |
| miRNA_PrecursorToMature | 0.140 | 0.006 | 0.221 | |