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This page was generated on 2023-10-20 09:38:02 -0400 (Fri, 20 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson2macOS 12.6.1 Montereyarm644.3.1 (2023-06-16) -- "Beagle Scouts" 4347
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 779/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeneGA 1.50.0  (landing page)
Zhenpeng Li
Snapshot Date: 2023-10-15 14:00:07 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/GeneGA
git_branch: RELEASE_3_17
git_last_commit: f1f2c0d
git_last_commit_date: 2023-04-25 10:18:12 -0400 (Tue, 25 Apr 2023)
kjohnson2macOS 12.6.1 Monterey / arm64  OK    ERROR  skippedskipped

BUILD results for GeneGA on kjohnson2


To the developers/maintainers of the GeneGA package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: GeneGA
Version: 1.50.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GeneGA
StartedAt: 2023-10-16 03:58:43 -0400 (Mon, 16 Oct 2023)
EndedAt: 2023-10-16 03:58:52 -0400 (Mon, 16 Oct 2023)
EllapsedTime: 8.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GeneGA
###
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* checking for file ‘GeneGA/DESCRIPTION’ ... OK
* preparing ‘GeneGA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘GeneGA.Rnw’ using Sweave
Loading required package: seqinr
Loading required package: hash
hash-2.2.6.2 provided by Decision Patterns

sh: RNAfold: command not found

Error: processing vignette 'GeneGA.Rnw' failed with diagnostics:
 chunk 3 
Error in system(paste("echo ", x, "|RNAfold", sep = ""), intern = T) : 
  error in running command

--- failed re-building ‘GeneGA.Rnw’

SUMMARY: processing the following file failed:
  ‘GeneGA.Rnw’

Error: Vignette re-building failed.
Execution halted