Britta Velten
| Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023) |
| git_url: https://git.bioconductor.org/packages/graper |
| git_branch: RELEASE_3_17 |
| git_last_commit: 503e2c9 |
| git_last_commit_date: 2023-05-01 20:10:30 -0400 (Mon, 01 May 2023) |
| Back to Multiple platform build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-10-16 11:36:12 -0400 (Mon, 16 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 |
| merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 875/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| graper 1.16.1 (landing page) Britta Velten
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.6.4 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: graper |
| Version: 1.16.1 |
| Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:graper.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings graper_1.16.1.tar.gz |
| StartedAt: 2023-10-16 02:48:51 -0400 (Mon, 16 Oct 2023) |
| EndedAt: 2023-10-16 02:50:09 -0400 (Mon, 16 Oct 2023) |
| EllapsedTime: 78.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: graper.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:graper.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings graper_1.16.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.17-bioc/meat/graper.Rcheck'
* using R version 4.3.1 (2023-06-16 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
gcc.exe (GCC) 12.2.0
GNU Fortran (GCC) 12.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'graper/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'graper' version '1.16.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'graper' can be installed ... OK
* used C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
* checking C++ specification ... NOTE
Specified C++11: please drop specification unless essential
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'F:/biocbuild/bbs-3.17-bioc/R/library/graper/libs/x64/graper.dll':
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'F:/biocbuild/bbs-3.17-bioc/meat/graper.Rcheck/00check.log'
for details.
graper.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL graper
###
##############################################################################
##############################################################################
* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'graper' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
using C++11
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/BH/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/BH/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fit_graper.cpp -o fit_graper.o
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from F:/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
from F:/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
from F:/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
from F:/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
from F:/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
from F:/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/lexical_cast.hpp:30,
from F:/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/math/tools/convert_from_string.hpp:15,
from F:/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/math/constants/constants.hpp:14,
from F:/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/math/special_functions/digamma.hpp:20,
from graper_linear_dense_ff.h:2,
from fit_graper.cpp:4:
F:/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
194 | failed ************ (Pred::************
| ^~~~~~~~~~~~~~~~~~~
195 | assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
196 | );
| ~
F:/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses
194 | failed ************ (Pred::************
| ^~~~~~~~~~~~~~~~~~~
| -
195 | assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
196 | );
| ~
| -
F:/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
201 | );
| ~
F:/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| -
200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
201 | );
| ~
| -
g++ -shared -s -static-libgcc -o graper.dll tmp.def RcppExports.o fit_graper.o -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc/R/library/00LOCK-graper/00new/graper/libs/x64
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)
graper.Rcheck/tests/testthat.Rout
R version 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graper)
>
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-880.268
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-573.27
ELB improved by 306.999
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-511.684
ELB improved by 61.5851
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-472.514
ELB improved by 39.1706
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.967
ELB improved by 17.547
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.932
ELB improved by 7.03491
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.809
ELB improved by 4.12332
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.493
ELB improved by 3.31601
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.428
ELB improved by 3.06464
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.413
ELB improved by 3.01444
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.4
ELB improved by 3.01393
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.431
ELB improved by 2.96817
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.624
ELB improved by 2.80705
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.114
ELB improved by 2.51064
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.984
ELB improved by 2.12939
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.24
ELB improved by 1.74401
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.83
ELB improved by 1.41018
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.677
ELB improved by 1.15314
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.697
ELB improved by 0.980409
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.836
ELB improved by 0.860416
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.117
ELB improved by 0.719466
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.568
ELB improved by 0.548835
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.157
ELB improved by 0.410571
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.833
ELB improved by 0.323898
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.561
ELB improved by 0.272765
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.319
ELB improved by 0.241763
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.097
ELB improved by 0.222327
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.886
ELB improved by 0.210222
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.683
ELB improved by 0.203389
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.482
ELB improved by 0.200821
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.28
ELB improved by 0.202039
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.073
ELB improved by 0.20685
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.858
ELB improved by 0.215241
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.631
ELB improved by 0.227315
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.387
ELB improved by 0.243256
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.124
ELB improved by 0.263293
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.836
ELB improved by 0.28765
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.52
ELB improved by 0.316483
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.17
ELB improved by 0.34979
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.783
ELB improved by 0.387301
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.354
ELB improved by 0.428374
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.883
ELB improved by 0.471942
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.366
ELB improved by 0.516613
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.805
ELB improved by 0.560903
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.202
ELB improved by 0.603168
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.562
ELB improved by 0.639754
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.901
ELB improved by 0.660844
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.25
ELB improved by 0.651631
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.643
ELB improved by 0.60695
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.105
ELB improved by 0.537629
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.648
ELB improved by 0.456848
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.274
ELB improved by 0.374175
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.975
ELB improved by 0.298916
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.737
ELB improved by 0.238538
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.541
ELB improved by 0.19594
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.369
ELB improved by 0.171626
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.201
ELB improved by 0.167765
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.011
ELB improved by 0.190574
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.762
ELB improved by 0.248738
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.412
ELB improved by 0.349652
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.908
ELB improved by 0.504757
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.21
ELB improved by 0.697675
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.435
ELB improved by 0.774759
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.808
ELB improved by 0.627162
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.316
ELB improved by 0.491869
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.77
ELB improved by 0.546338
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.915
ELB improved by 0.854279
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.6
ELB improved by 1.3152
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.96
ELB improved by 1.63978
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.135
ELB improved by 1.82587
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.272
ELB improved by 1.86222
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.806
ELB improved by 1.46668
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.925
ELB improved by 0.880417
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.433
ELB improved by 0.492014
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.158
ELB improved by 0.27527
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.996
ELB improved by 0.162002
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.892
ELB improved by 0.104363
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.817
ELB improved by 0.0748691
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.758
ELB improved by 0.0592599
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.707
ELB improved by 0.0505259
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.662
ELB improved by 0.0452967
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.62
ELB improved by 0.0419448
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.58
ELB improved by 0.0396624
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.542
ELB improved by 0.03803
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.505
ELB improved by 0.0368158
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.469
ELB improved by 0.0358834
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.434
ELB improved by 0.0351473
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.4
ELB improved by 0.0345515
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.366
ELB improved by 0.0340585
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.332
ELB improved by 0.0336438
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.299
ELB improved by 0.0332924
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.266
ELB improved by 0.032997
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.233
ELB improved by 0.0327567
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.2
ELB improved by 0.0325755
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.168
ELB improved by 0.0324617
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.135
ELB improved by 0.0324266
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.103
ELB improved by 0.0324834
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.07
ELB improved by 0.0326461
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.037
ELB improved by 0.0329288
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.004
ELB improved by 0.0333446
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.97
ELB improved by 0.033905
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.936
ELB improved by 0.0346194
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.9
ELB improved by 0.0354948
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.863
ELB improved by 0.0365353
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.826
ELB improved by 0.0377426
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.787
ELB improved by 0.0391151
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.746
ELB improved by 0.0406487
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.704
ELB improved by 0.042336
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.659
ELB improved by 0.0441668
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.613
ELB improved by 0.0461275
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.565
ELB improved by 0.0482008
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.515
ELB improved by 0.0503657
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.462
ELB improved by 0.0525968
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.407
ELB improved by 0.0548641
iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.35
ELB improved by 0.0571325
iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.291
ELB improved by 0.0593621
iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.229
ELB improved by 0.0615079
iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.166
ELB improved by 0.063521
iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.1
ELB improved by 0.0653486
iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.034
ELB improved by 0.0669366
iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.965
ELB improved by 0.0682312
iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.896
ELB improved by 0.0691813
iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.826
ELB improved by 0.069742
iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.756
ELB improved by 0.0698774
iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.687
ELB improved by 0.0695636
iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.618
ELB improved by 0.0687912
iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.551
ELB improved by 0.0675666
iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.485
ELB improved by 0.0659126
iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.421
ELB improved by 0.0638675
iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.359
ELB improved by 0.0614827
iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.3
ELB improved by 0.0588198
iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.245
ELB improved by 0.0559469
iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.192
ELB improved by 0.0529348
iteration 134
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.142
ELB improved by 0.0498531
iteration 135
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.095
ELB improved by 0.0467669
iteration 136
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.051
ELB improved by 0.0437346
iteration 137
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.01
ELB improved by 0.0408055
iteration 138
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.972
ELB improved by 0.0380185
iteration 139
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.937
ELB improved by 0.0354009
iteration 140
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.904
ELB improved by 0.0329673
iteration 141
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.873
ELB improved by 0.030719
iteration 142
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.845
ELB improved by 0.0286441
iteration 143
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.818
ELB improved by 0.0267183
iteration 144
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.793
ELB improved by 0.0249083
iteration 145
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.77
ELB improved by 0.0231773
iteration 146
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.748
ELB improved by 0.0214922
iteration 147
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.729
ELB improved by 0.0198309
iteration 148
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.71
ELB improved by 0.018187
iteration 149
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.694
ELB improved by 0.0165696
iteration 150
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.679
ELB improved by 0.0149996
iteration 151
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.665
ELB improved by 0.0135017
iteration 152
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.653
ELB improved by 0.0120987
iteration 153
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.642
ELB improved by 0.0108063
iteration 154
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.633
ELB improved by 0.00963228
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-846.092
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-587.56
ELB improved by 258.532
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-528.348
ELB improved by 59.2121
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-484.714
ELB improved by 43.6337
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-464.817
ELB improved by 19.897
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.761
ELB improved by 7.05606
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.122
ELB improved by 3.6385
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.233
ELB improved by 2.88987
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.454
ELB improved by 2.77814
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.552
ELB improved by 2.90224
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.465
ELB improved by 3.08754
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.293
ELB improved by 3.17185
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.308
ELB improved by 2.98446
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.825
ELB improved by 2.48317
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.981
ELB improved by 1.84437
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.687
ELB improved by 1.29337
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.782
ELB improved by 0.905015
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.145
ELB improved by 0.637224
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.692
ELB improved by 0.453585
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.35
ELB improved by 0.341192
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.07
ELB improved by 0.280434
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.82
ELB improved by 0.24965
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.586
ELB improved by 0.234668
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.358
ELB improved by 0.228041
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.132
ELB improved by 0.226023
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.905
ELB improved by 0.226662
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.676
ELB improved by 0.228876
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.444
ELB improved by 0.232035
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.208
ELB improved by 0.235775
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.968
ELB improved by 0.239914
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.724
ELB improved by 0.244422
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.475
ELB improved by 0.249399
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.219
ELB improved by 0.255069
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.958
ELB improved by 0.261765
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.688
ELB improved by 0.269912
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.408
ELB improved by 0.280018
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.115
ELB improved by 0.292667
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.807
ELB improved by 0.308519
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.478
ELB improved by 0.328317
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.125
ELB improved by 0.352857
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.743
ELB improved by 0.382867
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.324
ELB improved by 0.418752
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.863
ELB improved by 0.460504
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.355
ELB improved by 0.508799
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.787
ELB improved by 0.567703
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.141
ELB improved by 0.645843
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.386
ELB improved by 0.754863
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.44
ELB improved by 0.946405
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.985
ELB improved by 1.45508
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.805
ELB improved by 2.17967
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.64
ELB improved by 2.16476
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.021
ELB improved by 1.61878
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.92
ELB improved by 1.10168
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.169
ELB improved by 0.750547
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.659
ELB improved by 0.510419
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.32
ELB improved by 0.339002
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.095
ELB improved by 0.224283
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.942
ELB improved by 0.153766
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.83
ELB improved by 0.111509
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.745
ELB improved by 0.085457
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.676
ELB improved by 0.0685332
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.619
ELB improved by 0.0569199
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.571
ELB improved by 0.0485667
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.528
ELB improved by 0.0423356
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.491
ELB improved by 0.0375631
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.457
ELB improved by 0.0338399
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.426
ELB improved by 0.0308986
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.398
ELB improved by 0.0285539
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.371
ELB improved by 0.0266694
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.346
ELB improved by 0.0251374
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.322
ELB improved by 0.0238664
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.299
ELB improved by 0.0227728
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.277
ELB improved by 0.0217782
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.257
ELB improved by 0.0208096
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.237
ELB improved by 0.0198059
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.218
ELB improved by 0.0187258
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.2
ELB improved by 0.0175555
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.184
ELB improved by 0.016311
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.169
ELB improved by 0.0150321
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.155
ELB improved by 0.0137698
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.143
ELB improved by 0.0125722
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.131
ELB improved by 0.0114743
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.121
ELB improved by 0.0104943
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.111
ELB improved by 0.00963483
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-839.921
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-592.555
ELB improved by 247.366
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-528.06
ELB improved by 64.4955
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-479.334
ELB improved by 48.7256
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.324
ELB improved by 25.0099
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.207
ELB improved by 10.1168
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.502
ELB improved by 5.70511
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.522
ELB improved by 4.98068
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.265
ELB improved by 5.25643
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.565
ELB improved by 5.70021
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.802
ELB improved by 5.76246
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.724
ELB improved by 5.07868
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.918
ELB improved by 3.80575
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.42
ELB improved by 2.49825
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.857
ELB improved by 1.56291
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.841
ELB improved by 1.0162
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.131
ELB improved by 0.709504
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.603
ELB improved by 0.528631
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.188
ELB improved by 0.414997
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.848
ELB improved by 0.339997
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.559
ELB improved by 0.288321
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.308
ELB improved by 0.25076
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.087
ELB improved by 0.221441
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.89
ELB improved by 0.196976
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.714
ELB improved by 0.176035
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.556
ELB improved by 0.158443
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.411
ELB improved by 0.144123
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.279
ELB improved by 0.132686
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.155
ELB improved by 0.123581
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.039
ELB improved by 0.116081
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.93
ELB improved by 0.109018
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.829
ELB improved by 0.100991
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.738
ELB improved by 0.0912256
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.658
ELB improved by 0.0800591
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.589
ELB improved by 0.0685297
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.532
ELB improved by 0.0576982
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.483
ELB improved by 0.0482501
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.443
ELB improved by 0.040448
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.409
ELB improved by 0.0342563
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.379
ELB improved by 0.0294668
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.353
ELB improved by 0.0257915
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.33
ELB improved by 0.0229401
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.31
ELB improved by 0.0206702
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.291
ELB improved by 0.018805
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.274
ELB improved by 0.0172264
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.258
ELB improved by 0.0158585
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.243
ELB improved by 0.0146533
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.23
ELB improved by 0.0135794
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.217
ELB improved by 0.0126152
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.205
ELB improved by 0.011745
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.194
ELB improved by 0.0109566
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.184
ELB improved by 0.0102402
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.174
ELB improved by 0.00958761
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-869.942
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-588.186
ELB improved by 281.756
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-527.246
ELB improved by 60.9401
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-487.058
ELB improved by 40.188
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-468.383
ELB improved by 18.6756
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-460.903
ELB improved by 7.47918
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.253
ELB improved by 3.65041
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.678
ELB improved by 2.57543
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.453
ELB improved by 2.22477
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.355
ELB improved by 2.09782
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.31
ELB improved by 2.04476
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.31
ELB improved by 2.00068
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.381
ELB improved by 1.92845
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.576
ELB improved by 1.80553
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.946
ELB improved by 1.62924
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.528
ELB improved by 1.41784
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.336
ELB improved by 1.19252
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.373
ELB improved by 0.962625
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.629
ELB improved by 0.74398
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.066
ELB improved by 0.563449
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.633
ELB improved by 0.433222
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.286
ELB improved by 0.346336
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.997
ELB improved by 0.289748
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.744
ELB improved by 0.25252
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.517
ELB improved by 0.227429
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.306
ELB improved by 0.210153
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.108
ELB improved by 0.19818
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.918
ELB improved by 0.190044
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.733
ELB improved by 0.18487
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.551
ELB improved by 0.182122
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.37
ELB improved by 0.181468
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.187
ELB improved by 0.182714
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.001
ELB improved by 0.185767
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.811
ELB improved by 0.190618
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.613
ELB improved by 0.197338
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.407
ELB improved by 0.206074
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.19
ELB improved by 0.217049
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.96
ELB improved by 0.230539
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.713
ELB improved by 0.246838
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.447
ELB improved by 0.266189
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.158
ELB improved by 0.288683
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.844
ELB improved by 0.314158
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.502
ELB improved by 0.342101
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.13
ELB improved by 0.371608
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.729
ELB improved by 0.401353
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.299
ELB improved by 0.429554
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.845
ELB improved by 0.453943
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.373
ELB improved by 0.471855
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.893
ELB improved by 0.480607
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.415
ELB improved by 0.478257
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.95
ELB improved by 0.464583
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.508
ELB improved by 0.441892
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.093
ELB improved by 0.415053
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.703
ELB improved by 0.390043
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.333
ELB improved by 0.370267
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.981
ELB improved by 0.35152
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.658
ELB improved by 0.323194
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.377
ELB improved by 0.281502
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.142
ELB improved by 0.234475
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.952
ELB improved by 0.190035
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.801
ELB improved by 0.151069
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.683
ELB improved by 0.118331
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.591
ELB improved by 0.0919186
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.519
ELB improved by 0.0713784
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.463
ELB improved by 0.0558338
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.419
ELB improved by 0.044265
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.383
ELB improved by 0.0357307
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.354
ELB improved by 0.0294661
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.329
ELB improved by 0.0248936
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.308
ELB improved by 0.0215957
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.288
ELB improved by 0.0192825
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.27
ELB improved by 0.017765
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.254
ELB improved by 0.0169379
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.237
ELB improved by 0.0167727
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.219
ELB improved by 0.0173182
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.201
ELB improved by 0.018703
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.18
ELB improved by 0.0211197
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.155
ELB improved by 0.0247374
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.125
ELB improved by 0.0294397
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.091
ELB improved by 0.0343283
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.054
ELB improved by 0.0373679
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.017
ELB improved by 0.036301
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.986
ELB improved by 0.0309887
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.962
ELB improved by 0.0240716
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.944
ELB improved by 0.0182869
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.93
ELB improved by 0.0144206
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.918
ELB improved by 0.0119738
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.907
ELB improved by 0.0103138
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.898
ELB improved by 0.00904805
ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
>
> proc.time()
user system elapsed
1.98 0.25 2.65
graper.Rcheck/graper-Ex.timings
| name | user | system | elapsed | |
| coef.graper | 0.07 | 0.00 | 0.06 | |
| getPIPs | 0.04 | 0.00 | 0.05 | |
| graper | 0.09 | 0.00 | 0.09 | |
| makeExampleData | 0 | 0 | 0 | |
| makeExampleDataWithUnequalGroups | 0.03 | 0.00 | 0.03 | |
| plotELBO | 0.25 | 0.00 | 0.25 | |
| plotGroupPenalties | 0.90 | 0.04 | 0.94 | |
| plotPosterior | 0.48 | 0.03 | 0.52 | |
| predict.graper | 1.62 | 0.09 | 1.72 | |
| print.graper | 0.05 | 0.00 | 0.04 | |