Stefano Berri
| Snapshot Date: 2023-04-12 13:00:02 -0400 (Wed, 12 Apr 2023) |
| git_url: https://git.bioconductor.org/packages/CNAnorm |
| git_branch: RELEASE_3_16 |
| git_last_commit: 06b7d11 |
| git_last_commit_date: 2023-01-19 11:15:48 -0400 (Thu, 19 Jan 2023) |
| Back to Mac ARM64 build report for BioC 3.16 |
|
This page was generated on 2023-04-19 11:01:53 -0400 (Wed, 19 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson | macOS 13.0 Ventura | arm64 | 4.2.2 (2022-10-31) -- "Innocent and Trusting" | 4256 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the CNAnorm package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 360/2183 | Hostname | OS / Arch | INSTALL | BUILD | BUILD BIN | ||||||||
| CNAnorm 1.44.3 (landing page) Stefano Berri
| kjohnson | macOS 13.0 Ventura / arm64 | OK | OK | OK | | |||||||
| Package: CNAnorm |
| Version: 1.44.3 |
| Command: rm -rf CNAnorm.buildbin-libdir && mkdir CNAnorm.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CNAnorm_1.44.3.tar.gz /Library/Frameworks/R.framework/Resources/bin/R CNAnorm.buildbin-libdir |
| StartedAt: 2023-04-18 14:37:27 -0400 (Tue, 18 Apr 2023) |
| EndedAt: 2023-04-18 14:37:49 -0400 (Tue, 18 Apr 2023) |
| EllapsedTime: 21.9 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: CNAnorm_1.44.3.tgz |
| PackageFileSize: 1.831 MiB |
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### Running command:
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### rm -rf CNAnorm.buildbin-libdir && mkdir CNAnorm.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CNAnorm_1.44.3.tar.gz /Library/Frameworks/R.framework/Resources/bin/R CNAnorm.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CNAnorm.buildbin-libdir CNAnorm_1.44.3.tar.gz'
>>>>>>>
* installing *source* package ‘CNAnorm’ ...
** using staged installation
** libs
/opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c daxpy.f -o daxpy.o
/opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c ddot.f -o ddot.o
/opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c dgbfa.f -o dgbfa.o
/opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c dgbsl.f -o dgbsl.o
/opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c dscal.f -o dscal.o
/opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c dsmooth.f -o dsmooth.o
f951: Warning: Nonconforming tab character in column 1 of line 14 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 15 [-Wtabs]
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f951: Warning: Nonconforming tab character in column 3 of line 23 [-Wtabs]
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f951: Warning: Nonconforming tab character in column 1 of line 27 [-Wtabs]
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f951: Warning: Nonconforming tab character in column 2 of line 32 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 33 [-Wtabs]
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f951: Warning: Nonconforming tab character in column 3 of line 36 [-Wtabs]
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f951: Warning: Nonconforming tab character in column 3 of line 71 [-Wtabs]
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f951: Warning: Nonconforming tab character in column 3 of line 74 [-Wtabs]
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f951: Warning: Nonconforming tab character in column 3 of line 94 [-Wtabs]
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f951: Warning: Nonconforming tab character in column 1 of line 96 [-Wtabs]
dsmooth.f:62:21:
62 | do 10 i=1,n-1
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
dsmooth.f:70:8:
70 | & diff(i-1)*diff(i+1) .lt. 0.) isplit(i)=1
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
dsmooth.f:50:6:
50 | function amed3(a,b,c)
| ^
Warning: ‘__result_amed3’ may be used uninitialized [-Wmaybe-uninitialized]
/opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c idamax.f -o idamax.o
clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o CNAnorm.so daxpy.o ddot.o dgbfa.o dgbsl.o dscal.o dsmooth.o idamax.o -L/opt/R/arm64/gfortran/lib/gcc/aarch64-apple-darwin20.6.0/12.0.1 -L/opt/R/arm64/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: -undefined dynamic_lookup may not work with chained fixups
ld: warning: could not create compact unwind for _dgbsl_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for ___emutls_get_address: registers 23 and 24 not saved contiguously in frame
ld: warning: could not create compact unwind for _med3r_: registers 72 and 73 not saved contiguously in frame
ld: warning: could not create compact unwind for _split_: registers 23 and 24 not saved contiguously in frame
installing to /Volumes/External/bbs-3.16-bioc-m1/meat/CNAnorm.buildbin-libdir/00LOCK-CNAnorm/00new/CNAnorm/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CNAnorm)
>>>>>>>
>>>>>>> FIXING LINKS FOR CNAnorm.buildbin-libdir/CNAnorm/libs/CNAnorm.so
>>>>>>>
install_name_tool -change "/opt/R/arm64/lib/libgcc_s.1.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libgcc_s.1.1.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs/CNAnorm.so"
install_name_tool -change "/opt/R/arm64/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libgfortran.5.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs/CNAnorm.so"
install_name_tool -change "/opt/R/arm64/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libquadmath.0.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs/CNAnorm.so"
install_name_tool -change "/opt/R/arm64/gfortran/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libgfortran.5.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs/CNAnorm.so"
install_name_tool -change "/opt/R/arm64/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libquadmath.0.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs/CNAnorm.so"