| Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:05:35 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the granulator package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/granulator.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 853/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| granulator 1.6.0 (landing page) Sabina Pfister
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| Package: granulator |
| Version: 1.6.0 |
| Command: F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:granulator.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings granulator_1.6.0.tar.gz |
| StartedAt: 2023-04-11 02:06:40 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 02:13:29 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 408.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: granulator.Rcheck |
| Warnings: 0 |
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### Running command:
###
### F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:granulator.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings granulator_1.6.0.tar.gz
###
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* using log directory 'F:/biocbuild/bbs-3.16-bioc/meat/granulator.Rcheck'
* using R version 4.2.3 (2023-03-15 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'granulator/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'granulator' version '1.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'granulator' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
deconvolute 46.43 0.11 46.55
plot_regress 34.28 0.27 34.77
plot_deconvolute 29.70 0.11 29.81
plot_proportions 28.69 0.11 28.80
benchmark 27.58 0.20 27.78
plot_benchmark 27.28 0.14 27.51
plot_correlate 27.05 0.12 27.22
correlate 26.45 0.10 26.55
plot_similarity 5.16 0.01 5.20
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
granulator.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL granulator ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.16-bioc/R/library' * installing *source* package 'granulator' ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (granulator)
granulator.Rcheck/tests/testthat.Rout
R version 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library("testthat")
> library("granulator")
>
> test_check("granulator")
[ FAIL 0 | WARN 23 | SKIP 0 | PASS 137 ]
[ FAIL 0 | WARN 23 | SKIP 0 | PASS 137 ]
>
> proc.time()
user system elapsed
54.23 0.90 57.62
granulator.Rcheck/granulator-Ex.timings
| name | user | system | elapsed | |
| benchmark | 27.58 | 0.20 | 27.78 | |
| correlate | 26.45 | 0.10 | 26.55 | |
| deconvolute | 46.43 | 0.11 | 46.55 | |
| get_TPM | 0 | 0 | 0 | |
| get_decon_methods | 0 | 0 | 0 | |
| load_ABIS | 0.02 | 0.00 | 0.08 | |
| plot_benchmark | 27.28 | 0.14 | 27.51 | |
| plot_correlate | 27.05 | 0.12 | 27.22 | |
| plot_deconvolute | 29.70 | 0.11 | 29.81 | |
| plot_proportions | 28.69 | 0.11 | 28.80 | |
| plot_regress | 34.28 | 0.27 | 34.77 | |
| plot_similarity | 5.16 | 0.01 | 5.20 | |