| Back to Multiple platform build/check report for BioC 3.16: simplified long |
|
This page was generated on 2023-04-12 11:05:50 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the RTNsurvival package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RTNsurvival.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1745/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RTNsurvival 1.22.0 (landing page) Clarice Groeneveld
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| Package: RTNsurvival |
| Version: 1.22.0 |
| Command: F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:RTNsurvival.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings RTNsurvival_1.22.0.tar.gz |
| StartedAt: 2023-04-11 05:30:38 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 05:33:57 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 198.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: RTNsurvival.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:RTNsurvival.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings RTNsurvival_1.22.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.16-bioc/meat/RTNsurvival.Rcheck' * using R version 4.2.3 (2023-03-15 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'RTNsurvival/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'RTNsurvival' version '1.22.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'RTNsurvival' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'runTests.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
RTNsurvival.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL RTNsurvival ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.16-bioc/R/library' * installing *source* package 'RTNsurvival' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RTNsurvival)
RTNsurvival.Rcheck/tests/runTests.Rout
R version 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("RTNsurvival")
RUNIT TEST PROTOCOL -- Tue Apr 11 05:33:47 2023
***********************************************
Number of test functions: 1
Number of errors: 0
Number of failures: 0
1 Test Suite :
RTNsurvival RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
8.75 0.68 9.42
RTNsurvival.Rcheck/RTNsurvival-Ex.timings
| name | user | system | elapsed | |
| TNS.data | 0.00 | 0.00 | 0.03 | |
| hclust_semisupervised | 0.06 | 0.02 | 0.08 | |
| tni2tnsPreprocess-methods | 0.31 | 0.02 | 0.33 | |
| tnsAREA3-methods | 1.64 | 0.00 | 1.64 | |
| tnsCox-methods | 1.41 | 0.17 | 1.57 | |
| tnsCoxInteraction-methods | 1.42 | 0.15 | 1.58 | |
| tnsGSEA2-methods | 0.83 | 0.05 | 0.88 | |
| tnsGet-methods | 0.87 | 0.11 | 0.98 | |
| tnsInteraction-methods | 0.83 | 0.05 | 0.88 | |
| tnsKM-methods | 1.39 | 0.09 | 1.48 | |
| tnsKmInteraction-methods | 1.45 | 0.05 | 1.50 | |
| tnsPlotCovariates-methods | 2.44 | 0.26 | 2.72 | |
| tnsPlotCox-methods | 0.97 | 0.03 | 1.00 | |
| tnsPlotCoxInteraction-methods | 1.52 | 0.07 | 1.58 | |
| tnsPlotGSEA2-methods | 1.92 | 0.01 | 1.94 | |
| tnsPlotKM-methods | 1.72 | 0.14 | 1.85 | |
| tnsPlotKmInteraction-methods | 0.87 | 0.02 | 0.90 | |
| tnsPlotSRE-methods | 0.99 | 0.00 | 0.98 | |
| tnsSRD-methods | 0.85 | 0.00 | 0.86 | |
| tnsSRE-methods | 1.61 | 0.05 | 1.66 | |
| tnsStratification | 0 | 0 | 0 | |