| Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:05:43 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the OLIN package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OLIN.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1380/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| OLIN 1.76.0 (landing page) Matthias Futschik
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| Package: OLIN |
| Version: 1.76.0 |
| Command: F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:OLIN.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings OLIN_1.76.0.tar.gz |
| StartedAt: 2023-04-11 04:04:06 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 04:05:12 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 66.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: OLIN.Rcheck |
| Warnings: 0 |
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###
### Running command:
###
### F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:OLIN.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings OLIN_1.76.0.tar.gz
###
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* using log directory 'F:/biocbuild/bbs-3.16-bioc/meat/OLIN.Rcheck'
* using R version 4.2.3 (2023-03-15 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'OLIN/DESCRIPTION' ... OK
* this is package 'OLIN' version '1.76.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'OLIN' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
'marray' 'methods'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to 'convert' in package code.
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
Package in Depends field not imported from: 'locfit'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ino: no visible global function definition for 'locfit'
ino: no visible global function definition for 'predict'
lin: no visible global function definition for 'locfit'
lin: no visible global function definition for 'predict'
oin: no visible global function definition for 'gcvplot'
oin: no visible global function definition for 'locfit'
oin: no visible global function definition for 'predict'
olin: no visible global function definition for 'gcv'
olin: no visible global function definition for 'locfit'
olin: no visible global function definition for 'predict'
Undefined global functions or variables:
gcv gcvplot locfit predict
Consider adding
importFrom("stats", "predict")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
olin 14.85 0.5 15.34
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
'F:/biocbuild/bbs-3.16-bioc/meat/OLIN.Rcheck/00check.log'
for details.
OLIN.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL OLIN ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.16-bioc/R/library' * installing *source* package 'OLIN' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OLIN)
OLIN.Rcheck/OLIN-Ex.timings
| name | user | system | elapsed | |
| anovaint | 0.10 | 0.00 | 0.11 | |
| anovapin | 0.08 | 0.00 | 0.07 | |
| anovaplate | 0.06 | 0.02 | 0.08 | |
| anovaspatial | 0.16 | 0.03 | 0.18 | |
| backgroundCorrect2 | 0.51 | 0.03 | 0.58 | |
| bas | 0.25 | 0.00 | 0.25 | |
| colorbar.mxy | 0.07 | 0.02 | 0.08 | |
| fdr.int | 0 | 0 | 0 | |
| fdr.int2 | 0 | 0 | 0 | |
| fdr.spatial | 0 | 0 | 0 | |
| fdr.spatial2 | 0 | 0 | 0 | |
| fgbg.visu | 0.10 | 0.00 | 0.11 | |
| ino | 0.27 | 0.03 | 0.30 | |
| lin | 0.59 | 0.04 | 0.64 | |
| m2v | 0.07 | 0.00 | 0.06 | |
| ma.matrix | 0.25 | 0.03 | 0.28 | |
| ma.vector | 0.36 | 0.04 | 0.39 | |
| mxy.abs.plot | 0.28 | 0.03 | 0.31 | |
| mxy.plot | 0.11 | 0.00 | 0.11 | |
| mxy2.plot | 0.06 | 0.01 | 0.08 | |
| oin | 0.76 | 0.07 | 0.83 | |
| olin | 14.85 | 0.50 | 15.34 | |
| p.int | 0 | 0 | 0 | |
| p.int2 | 0 | 0 | 0 | |
| p.spatial | 0 | 0 | 0 | |
| p.spatial2 | 0 | 0 | 0 | |
| sig.mask | 0 | 0 | 0 | |
| sigint.plot | 0 | 0 | 0 | |
| sigint.plot2 | 0 | 0 | 0 | |
| sigxy.plot | 0 | 0 | 0 | |
| sigxy.plot2 | 0 | 0 | 0 | |
| v2m | 0.05 | 0.00 | 0.05 | |