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###
### Running command:
###
###   F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:ttgsea.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings ttgsea_1.4.0.tar.gz
###
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##############################################################################


* using log directory 'F:/biocbuild/bbs-3.15-bioc/meat/ttgsea.Rcheck'
* using R version 4.2.1 (2022-06-23 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'ttgsea/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ttgsea' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ttgsea' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
fit_model     19.20   1.54   27.29
predict_model 18.83   1.72   24.93
bi_gru         4.23   1.69   32.50
text_token     2.40   0.05   16.48
token_vector   2.12   0.05   16.11
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
###
###   F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL ttgsea
###
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* installing to library 'F:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'ttgsea' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ttgsea)

R version 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(ttgsea)
Loading required package: keras
> 
> test_check("ttgsea")
2022-10-19 05:03:59.046247: W tensorflow/stream_executor/platform/default/dso_loader.cc:64] Could not load dynamic library 'cudart64_110.dll'; dlerror: cudart64_110.dll not found
2022-10-19 05:03:59.046298: I tensorflow/stream_executor/cuda/cudart_stub.cc:29] Ignore above cudart dlerror if you do not have a GPU set up on your machine.
2022-10-19 05:04:03.450688: W tensorflow/stream_executor/platform/default/dso_loader.cc:64] Could not load dynamic library 'nvcuda.dll'; dlerror: nvcuda.dll not found
2022-10-19 05:04:03.450741: W tensorflow/stream_executor/cuda/cuda_driver.cc:269] failed call to cuInit: UNKNOWN ERROR (303)
2022-10-19 05:04:03.451029: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:169] retrieving CUDA diagnostic information for host: palomino3
2022-10-19 05:04:03.451192: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:176] hostname: palomino3
2022-10-19 05:04:03.451752: I tensorflow/core/platform/cpu_feature_guard.cc:151] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations:  AVX AVX2
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.

 1/45 [..............................] - ETA: 2:48 - loss: 1.4028 - pearson_correlation: -0.3239
 4/45 [=>............................] - ETA: 0s - loss: 1.6192 - pearson_correlation: -0.0303  
 7/45 [===>..........................] - ETA: 0s - loss: 1.5517 - pearson_correlation: -0.0233
10/45 [=====>........................] - ETA: 0s - loss: 1.5507 - pearson_correlation: 0.0227 
13/45 [=======>......................] - ETA: 0s - loss: 1.5728 - pearson_correlation: 0.0414
16/45 [=========>....................] - ETA: 0s - loss: 1.5824 - pearson_correlation: 0.0686
19/45 [===========>..................] - ETA: 0s - loss: 1.5632 - pearson_correlation: 0.0741
22/45 [=============>................] - ETA: 0s - loss: 1.5497 - pearson_correlation: 0.0889
25/45 [===============>..............] - ETA: 0s - loss: 1.5489 - pearson_correlation: 0.1053
28/45 [=================>............] - ETA: 0s - loss: 1.5647 - pearson_correlation: 0.1067
31/45 [===================>..........] - ETA: 0s - loss: 1.5623 - pearson_correlation: 0.0926
34/45 [=====================>........] - ETA: 0s - loss: 1.5536 - pearson_correlation: 0.0838
37/45 [=======================>......] - ETA: 0s - loss: 1.5573 - pearson_correlation: 0.0992
40/45 [=========================>....] - ETA: 0s - loss: 1.5685 - pearson_correlation: 0.1122
43/45 [===========================>..] - ETA: 0s - loss: 1.5581 - pearson_correlation: 0.1126
45/45 [==============================] - 5s 23ms/step - loss: 1.5604 - pearson_correlation: 0.1103
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ]
> 
> proc.time()
   user  system elapsed 
  29.45    3.64   26.65