Soner Koc
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/sevenbridges |
| git_branch: master |
| git_last_commit: 0191c0a |
| git_last_commit_date: 2021-10-26 12:22:17 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:08:41 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the sevenbridges package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/sevenbridges.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1785/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| sevenbridges 1.25.0 (landing page) Soner Koc
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: sevenbridges |
| Version: 1.25.0 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:sevenbridges.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings sevenbridges_1.25.0.tar.gz |
| StartedAt: 2022-03-17 20:16:16 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 20:19:17 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 181.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: sevenbridges.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:sevenbridges.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings sevenbridges_1.25.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/sevenbridges.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'sevenbridges/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'sevenbridges' version '1.25.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'sevenbridges' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
Flow 39.27 0.03 39.35
Tool-class 13.14 0.03 13.17
link_what 7.33 0.02 8.55
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
sevenbridges.Rcheck/00install.out
##############################################################################
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###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL sevenbridges
###
##############################################################################
##############################################################################
* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'sevenbridges' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'sevenbridges'
finding HTML links ... done
App-class html
Auth-class html
Binding html
CCBList html
CWL html
CommandInputParameter-class html
CommandInputSchema-class html
CommandLineBinding-class html
CommandLineTool html
CommandOutputBinding-class html
CommandOutputParameter-class html
CommandOutputSchema-class html
DSCList html
Enum html
Expression-class html
ExpressionTool-class html
FS-class html
File-class html
Files-class html
Flow html
Handler-class html
Item-class html
Metadata html
Parameter html
Process html
ProcessRequirement html
Schema html
TaskHook html
Tool-class html
Workflow html
WorkflowStep html
addIdNum html
api html
as-methods html
batch html
cli_list_projects html
cli_list_tags html
cli_upload html
convert_app html
cwl-utils html
delete-methods html
download-methods html
get_token html
get_uploader html
input_output_matrix html
link html
link_what html
project_details html
project_members html
requirements html
REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-sevenbridges/00new/sevenbridges/help/fileDef.html
response-methods html
sbg_get_env html
sbg_set_env html
setListClass html
set_test_env html
sevenbridges-package html
shorthand-cwl html
status_check html
tag-methods html
test_tool_bunny html
test_tool_cwlrun html
test_tool_rabix html
upload_complete_all html
upload_complete_part html
upload_delete html
upload_info html
upload_info_part html
upload_init html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sevenbridges)
Making 'packages.html' ... done
sevenbridges.Rcheck/tests/testthat.Rout
R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library("testthat")
> library("sevenbridges")
> test_check("sevenbridges")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
>
> proc.time()
user system elapsed
2.75 0.25 4.43
sevenbridges.Rcheck/sevenbridges-Ex.timings
| name | user | system | elapsed | |
| App-class | 0 | 0 | 0 | |
| Auth-class | 0 | 0 | 0 | |
| Binding | 0.06 | 0.01 | 0.08 | |
| CCBList | 0.02 | 0.00 | 0.01 | |
| CWL | 0 | 0 | 0 | |
| CommandInputParameter-class | 0.03 | 0.00 | 0.03 | |
| CommandInputSchema-class | 0.01 | 0.00 | 0.02 | |
| CommandLineBinding-class | 0 | 0 | 0 | |
| CommandLineTool | 0.00 | 0.02 | 0.01 | |
| CommandOutputBinding-class | 0 | 0 | 0 | |
| CommandOutputParameter-class | 0.02 | 0.00 | 0.02 | |
| CommandOutputSchema-class | 0 | 0 | 0 | |
| DSCList | 0.01 | 0.00 | 0.01 | |
| Enum | 0.02 | 0.02 | 0.03 | |
| Expression-class | 0 | 0 | 0 | |
| ExpressionTool-class | 0.02 | 0.00 | 0.02 | |
| File-class | 0.04 | 0.00 | 0.04 | |
| Files-class | 0 | 0 | 0 | |
| Flow | 39.27 | 0.03 | 39.35 | |
| Metadata | 0.09 | 0.00 | 0.09 | |
| Parameter | 0.03 | 0.00 | 0.03 | |
| Process | 0.07 | 0.00 | 0.07 | |
| ProcessRequirement | 0.04 | 0.00 | 0.04 | |
| Schema | 0.02 | 0.00 | 0.02 | |
| TaskHook | 0 | 0 | 0 | |
| Tool-class | 13.14 | 0.03 | 13.17 | |
| Workflow | 0.03 | 0.00 | 0.03 | |
| WorkflowStep | 0 | 0 | 0 | |
| addIdNum | 0 | 0 | 0 | |
| api | 0 | 0 | 0 | |
| as-methods | 0.08 | 0.00 | 0.08 | |
| batch | 0 | 0 | 0 | |
| cli_list_projects | 0 | 0 | 0 | |
| cli_list_tags | 0 | 0 | 0 | |
| cli_upload | 0 | 0 | 0 | |
| convert_app | 4.62 | 0.01 | 4.64 | |
| cwl-utils | 0.10 | 0.00 | 0.09 | |
| delete-methods | 0 | 0 | 0 | |
| download-methods | 0 | 0 | 0 | |
| get_token | 0 | 0 | 0 | |
| get_uploader | 0 | 0 | 0 | |
| input_output_matrix | 0.06 | 0.00 | 0.06 | |
| link | 4.72 | 0.00 | 4.72 | |
| link_what | 7.33 | 0.02 | 8.55 | |
| project_details | 0 | 0 | 0 | |
| project_members | 0 | 0 | 0 | |
| requirements | 0.06 | 0.00 | 0.06 | |
| response-methods | 0 | 0 | 0 | |
| sbg_get_env | 0 | 0 | 0 | |
| sbg_set_env | 0 | 0 | 0 | |
| set_test_env | 0 | 0 | 0 | |
| shorthand-cwl | 0.03 | 0.00 | 0.03 | |
| tag-methods | 0 | 0 | 0 | |
| test_tool_bunny | 0 | 0 | 0 | |
| test_tool_cwlrun | 0 | 0 | 0 | |
| test_tool_rabix | 0 | 0 | 0 | |
| upload_complete_all | 0 | 0 | 0 | |
| upload_complete_part | 0 | 0 | 0 | |
| upload_delete | 0 | 0 | 0 | |
| upload_info | 0 | 0 | 0 | |
| upload_info_part | 0 | 0 | 0 | |
| upload_init | 0 | 0 | 0 | |