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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:pageRank.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings pageRank_1.5.0.tar.gz
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* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/pageRank.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'pageRank/DESCRIPTION' ... OK
* this is package 'pageRank' version '1.5.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'pageRank' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
accessibility_network : <anonymous>: no visible global function
  definition for 'name'
Undefined global functions or variables:
  name
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
accessibility_network 9.51   0.53   12.61
conformation_network  9.47   0.36   12.08
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbuild/bbs-3.15-bioc/meat/pageRank.Rcheck/00check.log'
for details.

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###
### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL pageRank
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'pageRank' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'pageRank'
    finding HTML links ... done
    PX                                      html  
    PXPY                                    html  
    PXY                                     html  
    P_dist                                  html  
    P_graph                                 html  
    P_null                                  html  
    accessibility_network                   html  
    adjust_graph                            html  
    aracne_network                          html  
    bubble_plot                             html  
    clean_graph                             html  
    conformation_network                    html  
    diff_graph                              html  
    gene_bin                                html  
    get_color_gradient                      html  
    multiplex_page_rank                     html  
    time_expmat                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pageRank)
Making 'packages.html' ... done