Rui Guan
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/mina |
| git_branch: master |
| git_last_commit: 5317203 |
| git_last_commit_date: 2021-10-26 13:05:26 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:08:02 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the mina package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mina.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1158/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| mina 1.3.0 (landing page) Rui Guan
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: mina |
| Version: 1.3.0 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL mina |
| StartedAt: 2022-03-17 15:35:45 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 15:37:16 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 90.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL mina
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'mina' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppParallel/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppParallel/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c cp_cor.cpp -o cp_cor.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o mina.dll tmp.def RcppExports.o cp_cor.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-mina/00new/mina/libs/x64
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'norm' in package 'mina'
** help
*** installing help indices
converting help for package 'mina'
finding HTML links ... done
adj-matrix html
adj-mina html
adj html
adj_accessor html
adj_method_list html
bs_pm-mina html
bs_pm html
bs_pm_accessor html
check_mina html
check_mina_de html
check_mina_qu html
cls html
cls_accessor html
cls_tab html
cls_tab_accessor html
com_dis-matrix html
com_dis-mina html
com_dis html
com_dis_list html
com_plot-mina html
com_plot html
com_r2-mina html
com_r2 html
cp_cor html
data-hmp html
data-maize html
des_accessor html
dis_accessor html
dis_stat_accessor html
dmr-matrix html
dmr-mina html
dmr html
dmr_accessor html
filter_mat html
fit_tabs-mina html
fit_tabs html
get_contrast html
get_contrast_grp html
get_dis_df html
get_ja html
get_ja0 html
get_ja0_grp html
get_ja_grp html
get_net_cls_tab-matrix-data.frame-method
html
get_net_cls_tab html
get_r2-mat html
get_r2 html
get_rep-matrix html
get_rep-mima html
get_spectra html
get_stat html
hmp_des html
hmp_otu html
maize_asv html
maize_asv2 html
maize_des html
maize_des2 html
mat_or_NULL-class html
mina-class html
net_cls-matrix html
net_cls-mina html
net_cls html
net_cls_tab-mina-method html
net_cls_tab html
net_dis-mina html
net_dis html
net_dis_accessor html
net_dis_indi html
net_dis_pcoa html
net_dis_plot html
net_grp_cmp html
net_node_cmp html
norm_accessor html
norm_by_raref html
norm_by_total html
norm_tab-matrix html
norm_tab-mina html
norm_tab html
norm_tab_method_list html
pcoa_plot html
rarefaction_subsample html
re_format_AP html
re_format_MCL html
sim_par html
sparcc html
tab_accessor html
tina-matrix-method html
tina html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mina)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'DelayedArray' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'tweeDEseq' is missing or broken
done