| Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-10-19 13:20:29 -0400 (Wed, 19 Oct 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the memes package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/memes.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1111/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| memes 1.4.1 (landing page) Spencer Nystrom
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: memes |
| Version: 1.4.1 |
| Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:memes.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings memes_1.4.1.tar.gz |
| StartedAt: 2022-10-18 20:27:39 -0400 (Tue, 18 Oct 2022) |
| EndedAt: 2022-10-18 20:29:38 -0400 (Tue, 18 Oct 2022) |
| EllapsedTime: 119.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: memes.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:memes.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings memes_1.4.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.15-bioc/meat/memes.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘memes/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘memes’ version ‘1.4.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘memes’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
add_sequence 7.788 0.388 8.176
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
memes.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL memes ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’ * installing *source* package ‘memes’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (memes)
memes.Rcheck/memes-Ex.timings
| name | user | system | elapsed | |
| add_sequence | 7.788 | 0.388 | 8.176 | |
| ame_compare_heatmap_methods | 0.799 | 0.072 | 0.871 | |
| check_meme_install | 0.490 | 0.011 | 0.502 | |
| drop_best_match | 0.007 | 0.000 | 0.008 | |
| example_ame | 0.066 | 0.000 | 0.066 | |
| example_ame_large | 0.05 | 0.00 | 0.05 | |
| force_best_match | 0.052 | 0.000 | 0.053 | |
| get_sequence | 0.369 | 0.004 | 0.380 | |
| has_duplicate_motifs | 0.170 | 0.008 | 0.182 | |
| importAme | 0.233 | 0.053 | 0.292 | |
| importDremeXML | 0.265 | 0.020 | 0.285 | |
| importFimo | 0.056 | 0.012 | 0.061 | |
| importMeme | 0.100 | 0.004 | 0.105 | |
| importStremeXML | 0.177 | 0.016 | 0.192 | |
| importTomTomXML | 0.346 | 0.008 | 0.355 | |
| meme_is_installed | 0.049 | 0.000 | 0.049 | |
| nest_tomtom | 0.144 | 0.008 | 0.153 | |
| plot_ame_heatmap | 0.345 | 0.004 | 0.349 | |
| plot_sequence_heatmap | 3.160 | 0.276 | 3.437 | |
| remove_duplicate_motifs | 0.002 | 0.000 | 0.002 | |
| runAme | 0.05 | 0.00 | 0.05 | |
| runDreme | 0.048 | 0.000 | 0.048 | |
| runFimo | 0.047 | 0.000 | 0.047 | |
| runMeme | 0.048 | 0.000 | 0.048 | |
| runTomTom | 0.051 | 0.000 | 0.051 | |
| update_best_match | 0.094 | 0.004 | 0.098 | |
| view_tomtom_hits | 0.831 | 0.040 | 0.871 | |
| write_fasta | 0.000 | 0.003 | 0.003 | |