Multiple platform build/check report for BioC 3.15 - CHECK results for graper on palomino3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 20.04.5 LTS)	x86_64	4.2.1 (2022-06-23) -- "Funny-Looking Kid"	4386
palomino3	Windows Server 2022 Datacenter	x64	4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid"	4138
merida1	macOS 10.14.6 Mojave	x86_64	4.2.1 (2022-06-23) -- "Funny-Looking Kid"	4205
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

Package: graper

Version: 1.12.0

Command: F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:graper.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings graper_1.12.0.tar.gz

StartedAt: 2022-10-19 00:47:52 -0400 (Wed, 19 Oct 2022)

EndedAt: 2022-10-19 00:49:19 -0400 (Wed, 19 Oct 2022)

EllapsedTime: 87.0 seconds

RetCode: 0

Status: OK

CheckDir: graper.Rcheck

Warnings: 0

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###
### Running command:
###
###   F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:graper.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings graper_1.12.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.15-bioc/meat/graper.Rcheck'
* using R version 4.2.1 (2022-06-23 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'graper/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'graper' version '1.12.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'graper' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'F:/biocbuild/bbs-3.15-bioc/R/library/graper/libs/x64/graper.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'F:/biocbuild/bbs-3.15-bioc/meat/graper.Rcheck/00check.log'
for details.

##############################################################################
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###
### Running command:
###
###   F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'graper' ...
** using staged installation
** libs
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/BH/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/BH/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c fit_graper.cpp -o fit_graper.o
In file included from F:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from F:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from F:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from F:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from F:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from F:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from F:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/lexical_cast.hpp:30,
                 from F:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/math/tools/lexical_cast.hpp:12,
                 from F:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/math/tools/convert_from_string.hpp:14,
                 from F:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/math/constants/constants.hpp:14,
                 from F:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/math/special_functions/digamma.hpp:20,
                 from graper_linear_dense_ff.h:2,
                 from fit_graper.cpp:4:
F:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
  194 | failed ************ (Pred::************
      |                     ^
F:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^
g++ -shared -s -static-libgcc -o graper.dll tmp.def RcppExports.o fit_graper.o -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-graper/00new/graper/libs/x64
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)


R version 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-812.723
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-556.994
ELB improved by 255.729

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-501.639
ELB improved by 55.3545

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-465.694
ELB improved by 35.9458

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.248
ELB improved by 16.4453

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.54
ELB improved by 6.70784

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.96
ELB improved by 3.58003

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.233
ELB improved by 2.72702

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.705
ELB improved by 2.52792

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.167
ELB improved by 2.53806

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.534
ELB improved by 2.63328

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.849
ELB improved by 2.6852

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.318
ELB improved by 2.53054

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.198
ELB improved by 2.12071

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.601
ELB improved by 1.59709

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.454
ELB improved by 1.14618

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.61
ELB improved by 0.844155

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.944
ELB improved by 0.66578

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.382
ELB improved by 0.562914

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.877
ELB improved by 0.504545

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.402
ELB improved by 0.475243

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.936
ELB improved by 0.465424

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.468
ELB improved by 0.468267

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.988
ELB improved by 0.48019

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.485
ELB improved by 0.502359

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.942
ELB improved by 0.543633

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.322
ELB improved by 0.620006

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.593
ELB improved by 0.729358

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.761
ELB improved by 0.831848

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.799
ELB improved by 0.961324

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.515
ELB improved by 1.28449

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.571
ELB improved by 1.94393

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.103
ELB improved by 2.46805

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.714
ELB improved by 2.3884

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.455
ELB improved by 2.25903

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.237
ELB improved by 2.21797

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.135
ELB improved by 2.10261

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.218
ELB improved by 1.91694

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.435
ELB improved by 1.78306

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.97
ELB improved by 1.4647

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.984
ELB improved by 0.986126

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.34
ELB improved by 0.644408

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.878
ELB improved by 0.461853

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.469
ELB improved by 0.408579

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.047
ELB improved by 0.422259

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.662
ELB improved by 0.384711

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.375
ELB improved by 0.287638

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.171
ELB improved by 0.203679

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.028
ELB improved by 0.142655

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.928
ELB improved by 0.100409

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.854
ELB improved by 0.073907

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.796
ELB improved by 0.0579852

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.748
ELB improved by 0.0480681

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.706
ELB improved by 0.0413477

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.67
ELB improved by 0.036353

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.638
ELB improved by 0.0323553

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.609
ELB improved by 0.0289934

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.583
ELB improved by 0.0260807

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.559
ELB improved by 0.0235133

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.538
ELB improved by 0.0212276

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.519
ELB improved by 0.0191808

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.501
ELB improved by 0.0173416

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.486
ELB improved by 0.0156857

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.472
ELB improved by 0.0141932

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.459
ELB improved by 0.0128473

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.447
ELB improved by 0.0116336

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.437
ELB improved by 0.0105395

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.427
ELB improved by 0.0095538

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-866.392
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-572.254
ELB improved by 294.137

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-513.772
ELB improved by 58.4825

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-476.235
ELB improved by 37.5366

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.67
ELB improved by 16.5648

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.536
ELB improved by 7.13461

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.884
ELB improved by 4.65162

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.73
ELB improved by 4.15412

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.664
ELB improved by 4.06615

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.618
ELB improved by 4.0459

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.681
ELB improved by 3.93739

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.051
ELB improved by 3.62988

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.95
ELB improved by 3.10073

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.496
ELB improved by 2.45417

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.647
ELB improved by 1.84877

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.267
ELB improved by 1.38055

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.216
ELB improved by 1.05039

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.403
ELB improved by 0.813159

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.771
ELB improved by 0.632484

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.276
ELB improved by 0.494609

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.883
ELB improved by 0.393135

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.564
ELB improved by 0.31916

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.3
ELB improved by 0.263419

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.08
ELB improved by 0.219763

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.895
ELB improved by 0.18514

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.738
ELB improved by 0.157832

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.601
ELB improved by 0.136327

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.482
ELB improved by 0.119199

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.377
ELB improved by 0.105277

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.283
ELB improved by 0.0937158

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.199
ELB improved by 0.0839406

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.123
ELB improved by 0.0755605

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.055
ELB improved by 0.0683033

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.993
ELB improved by 0.0619705

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.937
ELB improved by 0.0564115

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.885
ELB improved by 0.0515082

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.838
ELB improved by 0.0471652

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.795
ELB improved by 0.0433047

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.755
ELB improved by 0.0398619

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.718
ELB improved by 0.0367828

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.684
ELB improved by 0.0340216

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.653
ELB improved by 0.0315395

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.623
ELB improved by 0.0293035

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.596
ELB improved by 0.0272851

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.571
ELB improved by 0.0254599

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.547
ELB improved by 0.0238065

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.524
ELB improved by 0.0223067

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.504
ELB improved by 0.0209443

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.484
ELB improved by 0.0197053

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.465
ELB improved by 0.0185773

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.448
ELB improved by 0.0175496

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.431
ELB improved by 0.0166124

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.415
ELB improved by 0.0157574

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.4
ELB improved by 0.0149769

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.386
ELB improved by 0.0142643

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.372
ELB improved by 0.0136135

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.359
ELB improved by 0.0130193

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.347
ELB improved by 0.0124769

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.335
ELB improved by 0.011982

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.323
ELB improved by 0.0115307

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.312
ELB improved by 0.0111197

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.302
ELB improved by 0.0107457

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.291
ELB improved by 0.010406

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.281
ELB improved by 0.0100981

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.271
ELB improved by 0.00981972

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-844.025
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-588.474
ELB improved by 255.55

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-531.277
ELB improved by 57.1974

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-486.829
ELB improved by 44.4481

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.428
ELB improved by 25.4007

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.782
ELB improved by 10.646

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.444
ELB improved by 4.33874

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.835
ELB improved by 2.60876

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.825
ELB improved by 2.01009

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.076
ELB improved by 1.74832

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.461
ELB improved by 1.615

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.932
ELB improved by 1.52966

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.468
ELB improved by 1.4636

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.061
ELB improved by 1.40703

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.706
ELB improved by 1.35459

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.408
ELB improved by 1.29849

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.181
ELB improved by 1.22729

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.05
ELB improved by 1.13104

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.041
ELB improved by 1.00872

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.169
ELB improved by 0.871735

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.428
ELB improved by 0.74147

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.787
ELB improved by 0.640505

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.206
ELB improved by 0.58127

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.648
ELB improved by 0.558264

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.098
ELB improved by 0.549905

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.566
ELB improved by 0.531959

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.074
ELB improved by 0.491697

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.641
ELB improved by 0.433297

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.267
ELB improved by 0.373387

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.941
ELB improved by 0.326372

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.644
ELB improved by 0.297077

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.359
ELB improved by 0.28538

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.067
ELB improved by 0.291764

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.746
ELB improved by 0.320969

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.36
ELB improved by 0.385911

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.851
ELB improved by 0.508513

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.171
ELB improved by 0.680367

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.408
ELB improved by 0.762995

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.724
ELB improved by 0.684026

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.113
ELB improved by 0.610641

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.528
ELB improved by 0.585439

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.956
ELB improved by 0.571653

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.405
ELB improved by 0.551476

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.883
ELB improved by 0.521423

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.4
ELB improved by 0.483795

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.957
ELB improved by 0.442666

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.555
ELB improved by 0.401809

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.191
ELB improved by 0.363871

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.861
ELB improved by 0.330322

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.559
ELB improved by 0.301771

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.281
ELB improved by 0.278337

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.021
ELB improved by 0.26001

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.774
ELB improved by 0.246992

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.534
ELB improved by 0.24018

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.292
ELB improved by 0.242051

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.033
ELB improved by 0.25854

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.731
ELB improved by 0.301968

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.345
ELB improved by 0.386537

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.863
ELB improved by 0.482033

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.379
ELB improved by 0.48371

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.991
ELB improved by 0.387597

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.705
ELB improved by 0.286369

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.493
ELB improved by 0.21166

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.335
ELB improved by 0.158544

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.215
ELB improved by 0.120112

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.122
ELB improved by 0.0920507

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.051
ELB improved by 0.0716001

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.994
ELB improved by 0.056773

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.948
ELB improved by 0.0460437

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.91
ELB improved by 0.0382327

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.877
ELB improved by 0.0324462

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.849
ELB improved by 0.02803

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.825
ELB improved by 0.0245251

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.803
ELB improved by 0.0216275

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.784
ELB improved by 0.0191498

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.767
ELB improved by 0.0169861

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.752
ELB improved by 0.0150822

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.739
ELB improved by 0.0134113

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.727
ELB improved by 0.0119575

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.716
ELB improved by 0.0107059

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.706
ELB improved by 0.00963927

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-890.603
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-594.572
ELB improved by 296.031

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-537.87
ELB improved by 56.7025

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-499.928
ELB improved by 37.9416

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-479.45
ELB improved by 20.4776

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-469.823
ELB improved by 9.62761

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-464.265
ELB improved by 5.55802

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.726
ELB improved by 4.53924

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.421
ELB improved by 4.30442

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.177
ELB improved by 4.24443

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.118
ELB improved by 4.05854

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.548
ELB improved by 3.57006

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.723
ELB improved by 2.82564

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.679
ELB improved by 2.04382

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.274
ELB improved by 1.40431

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.321
ELB improved by 0.953659

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.66
ELB improved by 0.661203

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.18
ELB improved by 0.479845

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.811
ELB improved by 0.368954

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.511
ELB improved by 0.299848

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.256
ELB improved by 0.254938

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.032
ELB improved by 0.2244

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.829
ELB improved by 0.202944

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.641
ELB improved by 0.187675

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.464
ELB improved by 0.176926

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.294
ELB improved by 0.169689

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.129
ELB improved by 0.165343

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.965
ELB improved by 0.163535

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.801
ELB improved by 0.164113

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.634
ELB improved by 0.167074

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.462
ELB improved by 0.172531

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.281
ELB improved by 0.180666

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.089
ELB improved by 0.191679

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.884
ELB improved by 0.205743

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.661
ELB improved by 0.22298

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.417
ELB improved by 0.243535

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.149
ELB improved by 0.267737

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.853
ELB improved by 0.296241

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.523
ELB improved by 0.329992

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.153
ELB improved by 0.370005

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.736
ELB improved by 0.417095

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.264
ELB improved by 0.471584

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.732
ELB improved by 0.532921

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.132
ELB improved by 0.599167

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.466
ELB improved by 0.666535

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.736
ELB improved by 0.72936

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.956
ELB improved by 0.780841

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.142
ELB improved by 0.813991

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.321
ELB improved by 0.820749

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.531
ELB improved by 0.790141

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.814
ELB improved by 0.716781

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.197
ELB improved by 0.617112

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.677
ELB improved by 0.519406

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.238
ELB improved by 0.439297

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.86
ELB improved by 0.377789

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.529
ELB improved by 0.331072

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.233
ELB improved by 0.295872

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.963
ELB improved by 0.2708

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.706
ELB improved by 0.256294

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.452
ELB improved by 0.254086

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.186
ELB improved by 0.266618

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.892
ELB improved by 0.293335

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.572
ELB improved by 0.32049

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.25
ELB improved by 0.32143

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.962
ELB improved by 0.287878

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.72
ELB improved by 0.242731

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.51
ELB improved by 0.2097

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.318
ELB improved by 0.191713

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.145
ELB improved by 0.173302

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.004
ELB improved by 0.140649

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.904
ELB improved by 0.100309

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.837
ELB improved by 0.0665778

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.793
ELB improved by 0.044313

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.762
ELB improved by 0.0311082

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.739
ELB improved by 0.0234477

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.72
ELB improved by 0.0188645

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.704
ELB improved by 0.0159454

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.69
ELB improved by 0.0139373

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.677
ELB improved by 0.0124482

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.666
ELB improved by 0.0112736

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.656
ELB improved by 0.010305

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.646
ELB improved by 0.00948228

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
   2.40    0.23    2.64

name	user	system	elapsed
coef.graper	0.05	0.02	0.13
getPIPs	0.03	0.01	0.04
graper	0.06	0.03	0.09
makeExampleData	0.02	0.00	0.02
makeExampleDataWithUnequalGroups	0.00	0.01	0.02
plotELBO	0.25	0.02	0.26
plotGroupPenalties	0.73	0.00	0.83
plotPosterior	0.83	0.06	0.89
predict.graper	1.80	0.05	1.84
print.graper	0.03	0.02	0.05

CHECK results for graper on palomino3

Summary

Command output

Installation output

Tests output

Example timings