Altuna Akalin
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/genomation |
| git_branch: master |
| git_last_commit: fe8db24 |
| git_last_commit_date: 2021-11-18 16:59:51 -0400 (Thu, 18 Nov 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:07:36 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the genomation package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/genomation.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 746/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| genomation 1.27.1 (landing page) Altuna Akalin
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: genomation |
| Version: 1.27.1 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL genomation |
| StartedAt: 2022-03-17 16:07:35 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 16:09:02 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 86.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL genomation
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'genomation' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c binSum.cpp -o binSum.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o genomation.dll tmp.def RcppExports.o binSum.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-genomation/00new/genomation/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'Biostrings::pattern' by 'grid::pattern' when loading 'genomation'
** help
*** installing help indices
converting help for package 'genomation'
finding HTML links ... done
AnnotationByFeature-class html
AnnotationByGeneParts-class html
AnnotationByGeneParts-methods html
Max_c html
Mean_c html
Median_c html
Min_c html
Ops-ScoreMatrix-ScoreMatrix-method html
Ops-ScoreMatrixList-ScoreMatrixList-method
html
Ops-ScoreMatrixList-numeric-method html
Ops-numeric-ScoreMatrixList-method html
RandomEnrichment-class html
ScoreMatrix-class html
ScoreMatrix-methods html
ScoreMatrixBin-methods html
ScoreMatrixList-class html
ScoreMatrixList-methods html
Sum_c html
annotatGrWithGeneParts html
annotateWithFeature-methods html
annotateWithFeatureFlank-methods html
annotateWithFeatures-methods html
annotateWithGeneParts-methods html
finding level-2 HTML links ... done
bed12ToExons html
bed12ToIntrons html
binMatrix-methods html
binMax html
binMean html
binMedian html
binMin html
binSum html
binner html
c.ScoreMatrix html
c.ScoreMatrixList html
cage html
calculateOverlapSignificance-methods html
checkBedValidity html
checkClass html
compressedAndUrl2temp html
constrainRanges html
convertBed2Exons-methods html
convertBed2Introns-methods html
convertBedDf-methods html
cpgi html
detectUCSCheader html
distance2NearestFeature html
enrichmentMatrix-ScoreMatrix-method html
enrichmentMatrix-ScoreMatrixList-ScoreMatrix-method
html
enrichmentMatrix-ScoreMatrixList-method
html
file.ext html
findFeatureComb-methods html
galpTo2Ranges html
genes html
getColors html
getFeatsWithTargetsStats-methods html
getFlanks-methods html
getMembers-methods html
getRandomEnrichment-methods html
getTargetAnnotationStats-methods html
gffToGRanges html
heatMatrix html
heatMeta html
heatTargetAnnotation-methods html
intersectScoreMatrixList-methods html
listSliceMax html
listSliceMean html
listSliceMedian html
listSliceMin html
listSliceSum html
multiHeatMatrix html
orderBy-methods html
patternMatrix-methods html
plotMeta html
plotTargetAnnotation-methods html
promoters html
randomizeFeature-methods html
read.zip html
readBam html
readBed html
readBigWig html
readBroadPeak html
readFeatureFlank-methods html
readGeneric html
readNarrowPeak html
readTableFast html
readTranscriptFeatures-methods html
scaleScoreMatrix-methods html
scaleScoreMatrixList html
show-methods html
sub-ScoreMatrix-ANY-ANY-ANY-method html
sub-ScoreMatrixList-ANY-ANY-ANY-method
html
target.type html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'Biostrings::pattern' by 'grid::pattern' when loading 'genomation'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'Biostrings::pattern' by 'grid::pattern' when loading 'genomation'
** testing if installed package keeps a record of temporary installation path
* DONE (genomation)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'RJMCMCNucleosomes' is missing or broken
done