Multiple platform build/check report for BioC 3.15 - INSTALL results for fishpond on riesling1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 20.04.4 LTS)	x86_64	R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences"	4334
riesling1	Windows Server 2019 Standard	x64	R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences"	4097
palomino3	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences"	4083
merida1	macOS 10.14.6 Mojave	x86_64	R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences"	4134
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

Hostname

Arch (*)

R version

Installed pkgs

nebbiolo1

Linux (Ubuntu 20.04.4 LTS)

x86_64

R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences"

4334

riesling1

Windows Server 2019 Standard

x64

R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences"

4097

palomino3

Windows Server 2022 Datacenter

x64

R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences"

4083

merida1

macOS 10.14.6 Mojave

x86_64

R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences"

4134

Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for fishpond on riesling1

To the developers/maintainers of the fishpond package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fishpond.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

fishpond 2.1.24 (landing page)
Michael Love

Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)

git_url: https://git.bioconductor.org/packages/fishpond

git_branch: master

git_last_commit: 6caa6c5

git_last_commit_date: 2022-03-15 14:26:29 -0400 (Tue, 15 Mar 2022)

nebbiolo1

Linux (Ubuntu 20.04.4 LTS) / x86_64

ERROR

skipped

riesling1

Windows Server 2019 Standard / x64

ERROR

skipped

palomino3

Windows Server 2022 Datacenter / x64

ERROR

skipped

merida1

macOS 10.14.6 Mojave / x86_64

ERROR

skipped

Summary

Package: fishpond

Version: 2.1.24

Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL fishpond

StartedAt: 2022-03-17 15:44:59 -0400 (Thu, 17 Mar 2022)

EndedAt: 2022-03-17 15:46:37 -0400 (Thu, 17 Mar 2022)

EllapsedTime: 97.6 seconds

RetCode: 0

Status: OK

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL fishpond
###
##############################################################################
##############################################################################


* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'fishpond' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c readEDS.cpp -o readEDS.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o fishpond.dll tmp.def RcppExports.o readEDS.o -lz -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-fishpond/00new/fishpond/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'fishpond'
    finding HTML links ... done
    addStatsFromCSV                         html  
    alevinEC                                html  
    computeInfRV                            html  
    deswish                                 html  
    fishpond-package                        html  
    getTrace                                html  
    importAllelicCounts                     html  
    isoformProportions                      html  
    labelKeep                               html  
    loadFry                                 html  
    makeInfReps                             html  
    makeSimSwishData                        html  
    makeTx2Tss                              html  
    miniSwish                               html  
    plotAllelicGene                         html  
    plotAllelicHeatmap                      html  
    plotInfReps                             html  
    plotMASwish                             html  
    readEDS                                 html  
    salmonEC                                html  
    scaleInfReps                            html  
    splitSwish                              html  
    swish                                   html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fishpond)
Making 'packages.html' ... done