Pierre Khoueiry
| Snapshot Date: 2022-10-18 13:55:19 -0400 (Tue, 18 Oct 2022) |
| git_url: https://git.bioconductor.org/packages/fcScan |
| git_branch: RELEASE_3_15 |
| git_last_commit: a393868 |
| git_last_commit_date: 2022-04-26 11:58:13 -0400 (Tue, 26 Apr 2022) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-10-19 13:21:28 -0400 (Wed, 19 Oct 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the fcScan package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fcScan.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 654/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| fcScan 1.10.0 (landing page) Pierre Khoueiry
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: fcScan |
| Version: 1.10.0 |
| Command: F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:fcScan.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings fcScan_1.10.0.tar.gz |
| StartedAt: 2022-10-19 00:12:19 -0400 (Wed, 19 Oct 2022) |
| EndedAt: 2022-10-19 00:28:25 -0400 (Wed, 19 Oct 2022) |
| EllapsedTime: 965.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: fcScan.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:fcScan.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings fcScan_1.10.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.15-bioc/meat/fcScan.Rcheck'
* using R version 4.2.1 (2022-06-23 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'fcScan/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'fcScan' version '1.10.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'fcScan' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
getCluster 0.21 0 14.25
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'runTests.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
fcScan.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL fcScan ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'fcScan' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fcScan)
fcScan.Rcheck/tests/runTests.Rout
R version 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("fcScan")
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Attaching package: 'IRanges'
The following object is masked from 'package:grDevices':
windows
Loading required package: GenomeInfoDb
17 entries loaded
Running getCluster using 1 threads
Time difference of 14.5879 secs
Sites in condition do not match sites in data
3 entries loaded
Running getCluster using 1 threads
Time difference of 14.24013 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 14.39516 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 14.50245 secs
17 entries loaded
Running getCluster using 1 threads
No cluster found
17 entries loaded
Running getCluster using 1 threads
Time difference of 14.21942 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 13.45166 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 13.68148 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 14.64877 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 14.96478 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 13.68385 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 15.39364 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 15.60272 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 15.03406 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 14.84508 secs
10 entries loaded
Running getCluster using 1 threads
Time difference of 14.7648 secs
10 entries loaded
Running getCluster using 1 threads
No cluster found
10 entries loaded
Running getCluster using 1 threads
Time difference of 14.975 secs
16 entries loaded
Running getCluster using 1 threads
Time difference of 14.93733 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 15.18472 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 15.16127 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 15.78578 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 15.85635 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 15.77798 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 16.4874 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 16.18921 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 16.31014 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 15.59874 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 14.88961 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 15.55031 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 15.25676 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 16.27256 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 14.91862 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 15.92697 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 16.18596 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 16.01274 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 16.89479 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 15.68275 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 15.31631 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 15.14858 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 15.36894 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 16.80871 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 17.30366 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 16.07734 secs
RUNIT TEST PROTOCOL -- Wed Oct 19 00:28:07 2022
***********************************************
Number of test functions: 1
Number of errors: 0
Number of failures: 0
1 Test Suite :
fcScan RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
17.42 1.28 688.28
fcScan.Rcheck/fcScan-Ex.timings
| name | user | system | elapsed | |
| getCluster | 0.21 | 0.00 | 14.25 | |