| Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-10-19 13:22:52 -0400 (Wed, 19 Oct 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the drugTargetInteractions package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/drugTargetInteractions.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 565/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| drugTargetInteractions 1.4.1 (landing page) Thomas Girke
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: drugTargetInteractions |
| Version: 1.4.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:drugTargetInteractions.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings drugTargetInteractions_1.4.1.tar.gz |
| StartedAt: 2022-10-19 01:53:31 -0400 (Wed, 19 Oct 2022) |
| EndedAt: 2022-10-19 02:02:51 -0400 (Wed, 19 Oct 2022) |
| EllapsedTime: 560.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: drugTargetInteractions.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:drugTargetInteractions.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings drugTargetInteractions_1.4.1.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.15-bioc/meat/drugTargetInteractions.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘drugTargetInteractions/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘drugTargetInteractions’ version ‘1.4.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘drugTargetInteractions’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.getCacheFile: no visible binding for global variable 'create_time'
getParalogs: no visible global function definition for 'setNames'
Undefined global functions or variables:
create_time setNames
Consider adding
importFrom("stats", "setNames")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
drugTargetAnnotTable 67.544 1.180 68.856
processDrugage 55.833 0.688 60.365
transformTTD 9.912 0.696 10.840
downloadUniChem 4.375 0.275 5.093
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.15-bioc/meat/drugTargetInteractions.Rcheck/00check.log’
for details.
drugTargetInteractions.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL drugTargetInteractions ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’ * installing *source* package ‘drugTargetInteractions’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (drugTargetInteractions)
drugTargetInteractions.Rcheck/drugTargetInteractions-Ex.timings
| name | user | system | elapsed | |
| cmpIdMapping | 0.000 | 0.001 | 0.001 | |
| downloadChemblDb | 0 | 0 | 0 | |
| downloadUniChem | 4.375 | 0.275 | 5.093 | |
| drugTargetAnnot | 0.028 | 0.003 | 0.032 | |
| drugTargetAnnotTable | 67.544 | 1.180 | 68.856 | |
| drugTargetBioactivity | 0.135 | 0.007 | 0.142 | |
| genConfig | 0.001 | 0.000 | 0.000 | |
| getDrugTarget | 0.034 | 0.003 | 0.037 | |
| getParalogs | 0.001 | 0.000 | 0.001 | |
| getSymEnsUp | 2.564 | 0.159 | 2.740 | |
| getUniprotIDs | 0 | 0 | 0 | |
| processDrugage | 55.833 | 0.688 | 60.365 | |
| runDrugTarget_Annot_Bioassay | 0.737 | 0.031 | 0.772 | |
| transformTTD | 9.912 | 0.696 | 10.840 | |