Daniel Huebschmann
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/YAPSA |
| git_branch: master |
| git_last_commit: 2261ecf |
| git_last_commit_date: 2021-11-13 14:32:49 -0400 (Sat, 13 Nov 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:08:59 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the YAPSA package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/YAPSA.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2085/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| YAPSA 1.21.1 (landing page) Daniel Huebschmann
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: YAPSA |
| Version: 1.21.1 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:YAPSA.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings YAPSA_1.21.1.tar.gz |
| StartedAt: 2022-03-17 20:37:06 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 20:42:52 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 346.1 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: YAPSA.Rcheck |
| Warnings: 1 |
##############################################################################
##############################################################################
###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:YAPSA.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings YAPSA_1.21.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/YAPSA.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'YAPSA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'YAPSA' version '1.21.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'YAPSA' can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import 'GenomicRanges::subtract' by 'magrittr::subtract' when loading 'YAPSA'
See 'D:/biocbuild/bbs-3.15-bioc/meat/YAPSA.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
read_list: no visible global function definition for 'detectCores'
read_list: no visible global function definition for 'makeCluster'
read_list: no visible global function definition for 'mclapply'
read_list: no visible global function definition for 'stopCluster'
Undefined global functions or variables:
detectCores makeCluster mclapply stopCluster
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
confidence_indel_only_calulation 16.35 0.03 16.38
create_indel_mutation_catalogue_from_df 9.12 0.37 9.50
build_gene_list_for_pathway 3.00 0.10 19.98
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
'D:/biocbuild/bbs-3.15-bioc/meat/YAPSA.Rcheck/00check.log'
for details.
YAPSA.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL YAPSA
###
##############################################################################
##############################################################################
* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'YAPSA' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Warning: replacing previous import 'GenomicRanges::subtract' by 'magrittr::subtract' when loading 'YAPSA'
** help
*** installing help indices
converting help for package 'YAPSA'
finding HTML links ... done
GenomeOfNl_raw html
LCD html
LCD_SMC html
LCD_complex_cutoff html
MutCat_indel_df html
SMC html
SMC_perPID html
YAPSA html
add_annotation html
add_as_fist_to_list html
aggregate_exposures_by_category html
annotate_intermut_dist_PID html
annotate_intermut_dist_cohort html
annotation_exposures_barplot html
annotation_exposures_list_barplot html
annotation_heatmap_exposures html
attribute_nucleotide_exchanges html
attribute_sequence_contex_indel html
attribution_of_indels html
build_gene_list_for_pathway html
classify_indels html
compare_SMCs html
compare_exposures html
compare_expousre_sets html
compare_sets html
compare_to_catalogues html
complex_heatmap_exposures html
computeLogLik html
compute_comparison_stat_df html
confIntExp html
confidence_indel_calulation html
confidence_indel_only_calulation html
correct_rounded html
cosineDist html
cosineMatchDist html
create_indel_mut_cat_from_df html
create_indel_mutation_catalogue_from_df
html
create_mutation_catalogue_from_VR html
create_mutation_catalogue_from_df html
finding level-2 HTML links ... done
cut_breaks_as_intervals html
cutoffs html
cutoffs_pcawg html
deriveSigInd_df html
disambiguateVector html
enrichSigs html
exampleINDEL_YAPSA html
exampleYAPSA html
exchange_colour_vector html
exome_mutCatRaw_df html
exposures_barplot html
extract_names_from_gene_list html
find_affected_PIDs html
getSequenceContext html
get_extreme_PIDs html
hclust_exposures html
logLikelihood html
lymphomaNature2013_mutCat_df html
makeVRangesFromDataFrame html
make_catalogue_strata_df html
make_comparison_matrix html
make_strata_df html
make_subgroups_df html
melt_exposures html
merge_exposures html
normalizeMotifs_otherRownames html
normalize_df_per_dim html
plotExchangeSpectra html
plotExchangeSpectra_indel html
plotExposuresConfidence html
plotExposuresConfidence_indel html
plot_SMC html
plot_exposures html
plot_strata html
read_entry html
relateSigs html
repeat_df html
round_precision html
run_SMC html
run_annotate_vcf_pl html
run_comparison_catalogues html
run_comparison_general html
run_kmer_frequency_correction html
run_kmer_frequency_normalization html
run_plot_strata_general html
shapiro_if_possible html
sigs html
sigs_pcawg html
split_exposures_by_subgroups html
stat_plot_subgroups html
stat_test_SMC html
stat_test_subgroups html
stderrmean html
sum_over_list_of_df html
targetCapture_cor_factors html
temp_trellis_rainfall_plot html
testSigs html
test_exposureAffected html
test_gene_list_in_exposures html
transform_rownames_R_to_MATLAB html
translate_to_hg19 html
trellis_rainfall_plot html
trellis_rainfall_plot_old html
variateExp html
variateExpSingle html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Warning: replacing previous import 'GenomicRanges::subtract' by 'magrittr::subtract' when loading 'YAPSA'
** testing if installed package can be loaded from final location
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Warning: replacing previous import 'GenomicRanges::subtract' by 'magrittr::subtract' when loading 'YAPSA'
** testing if installed package keeps a record of temporary installation path
* DONE (YAPSA)
Making 'packages.html' ... done
YAPSA.Rcheck/tests/testthat.Rout
R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> Sys.setenv(R_TESTS=" ")
> library(testthat)
> library(YAPSA)
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Attaching package: 'IRanges'
The following object is masked from 'package:grDevices':
windows
Loading required package: GenomeInfoDb
Loading required package: ggplot2
Loading required package: grid
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Found more than one class "atomicVector" in cache; using the first, from namespace 'Matrix'
Also defined by 'Rmpfr'
Warning message:
replacing previous import 'GenomicRanges::subtract' by 'magrittr::subtract' when loading 'YAPSA'
>
> test_check("YAPSA")
YAPSA:::shapiro_if_possible::error: Non-numeric inputYAPSA:::makeVRangesFromDataFrame::warning:strand information missing, set to "+".
YAPSA:::makeVRangesFromDataFrame::in_PID.field found. Retrieving PID information.
YAPSA:::makeVRangesFromDataFrame::in_subgroup.field found. Retrieving subgroup information.
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 62 ]
>
> proc.time()
user system elapsed
11.53 0.56 12.07
YAPSA.Rcheck/YAPSA-Ex.timings
| name | user | system | elapsed | |
| GenomeOfNl_raw | 0 | 0 | 0 | |
| LCD | 0.00 | 0.02 | 0.02 | |
| LCD_complex_cutoff | 0 | 0 | 0 | |
| MutCat_indel_df | 0.01 | 0.00 | 0.02 | |
| SMC | 0 | 0 | 0 | |
| SMC_perPID | 0 | 0 | 0 | |
| add_annotation | 0 | 0 | 0 | |
| add_as_fist_to_list | 0 | 0 | 0 | |
| aggregate_exposures_by_category | 0 | 0 | 0 | |
| annotate_intermut_dist_PID | 0.02 | 0.00 | 0.01 | |
| annotate_intermut_dist_cohort | 0.01 | 0.00 | 0.02 | |
| annotation_exposures_barplot | 0 | 0 | 0 | |
| annotation_exposures_list_barplot | 0 | 0 | 0 | |
| annotation_heatmap_exposures | 0 | 0 | 0 | |
| attribute_nucleotide_exchanges | 0 | 0 | 0 | |
| attribute_sequence_contex_indel | 1.13 | 0.03 | 1.15 | |
| attribution_of_indels | 0.31 | 0.06 | 0.38 | |
| build_gene_list_for_pathway | 3.00 | 0.10 | 19.98 | |
| classify_indels | 0 | 0 | 0 | |
| compare_SMCs | 0 | 0 | 0 | |
| compare_exposures | 0 | 0 | 0 | |
| compare_expousre_sets | 0 | 0 | 0 | |
| compare_sets | 0 | 0 | 0 | |
| compare_to_catalogues | 0 | 0 | 0 | |
| complex_heatmap_exposures | 0.68 | 0.00 | 0.69 | |
| computeLogLik | 0 | 0 | 0 | |
| compute_comparison_stat_df | 0 | 0 | 0 | |
| confIntExp | 0.91 | 0.18 | 1.09 | |
| confidence_indel_calulation | 0 | 0 | 0 | |
| confidence_indel_only_calulation | 16.35 | 0.03 | 16.38 | |
| correct_rounded | 0 | 0 | 0 | |
| cosineDist | 0 | 0 | 0 | |
| cosineMatchDist | 0.00 | 0.02 | 0.01 | |
| create_indel_mut_cat_from_df | 0.31 | 0.00 | 0.31 | |
| create_indel_mutation_catalogue_from_df | 9.12 | 0.37 | 9.50 | |
| create_mutation_catalogue_from_VR | 0.93 | 0.07 | 0.99 | |
| create_mutation_catalogue_from_df | 0.65 | 0.11 | 0.76 | |
| cut_breaks_as_intervals | 0.1 | 0.0 | 0.1 | |
| deriveSigInd_df | 0 | 0 | 0 | |
| disambiguateVector | 0 | 0 | 0 | |
| enrichSigs | 0 | 0 | 0 | |
| exampleYAPSA | 0.06 | 0.01 | 0.08 | |
| exome_mutCatRaw_df | 0 | 0 | 0 | |
| exposures_barplot | 1.96 | 0.00 | 1.95 | |
| extract_names_from_gene_list | 0 | 0 | 0 | |
| find_affected_PIDs | 0 | 0 | 0 | |
| getSequenceContext | 0.09 | 0.00 | 0.10 | |
| get_extreme_PIDs | 0.03 | 0.00 | 0.03 | |
| hclust_exposures | 0 | 0 | 0 | |
| logLikelihood | 0.69 | 0.10 | 0.78 | |
| lymphomaNature2013_mutCat_df | 0.01 | 0.00 | 0.02 | |
| makeVRangesFromDataFrame | 0.08 | 0.00 | 0.07 | |
| make_catalogue_strata_df | 0 | 0 | 0 | |
| make_comparison_matrix | 0.06 | 0.00 | 0.06 | |
| make_strata_df | 0 | 0 | 0 | |
| make_subgroups_df | 0.03 | 0.00 | 0.03 | |
| melt_exposures | 0 | 0 | 0 | |
| merge_exposures | 0 | 0 | 0 | |
| normalizeMotifs_otherRownames | 0 | 0 | 0 | |
| normalize_df_per_dim | 0 | 0 | 0 | |
| plotExchangeSpectra | 0 | 0 | 0 | |
| plotExchangeSpectra_indel | 0.81 | 0.01 | 0.83 | |
| plotExposuresConfidence | 0 | 0 | 0 | |
| plotExposuresConfidence_indel | 0 | 0 | 0 | |
| plot_SMC | 0 | 0 | 0 | |
| plot_exposures | 0.36 | 0.00 | 0.36 | |
| plot_strata | 0 | 0 | 0 | |
| read_entry | 0 | 0 | 0 | |
| relateSigs | 0 | 0 | 0 | |
| repeat_df | 0 | 0 | 0 | |
| round_precision | 0 | 0 | 0 | |
| run_SMC | 3.17 | 0.24 | 3.40 | |
| run_annotate_vcf_pl | 0 | 0 | 0 | |
| run_comparison_catalogues | 0 | 0 | 0 | |
| run_comparison_general | 0 | 0 | 0 | |
| run_kmer_frequency_correction | 0 | 0 | 0 | |
| run_kmer_frequency_normalization | 0 | 0 | 0 | |
| run_plot_strata_general | 0 | 0 | 0 | |
| shapiro_if_possible | 0 | 0 | 0 | |
| split_exposures_by_subgroups | 0 | 0 | 0 | |
| stat_plot_subgroups | 0 | 0 | 0 | |
| stat_test_SMC | 0 | 0 | 0 | |
| stat_test_subgroups | 0 | 0 | 0 | |
| stderrmean | 0 | 0 | 0 | |
| sum_over_list_of_df | 0 | 0 | 0 | |
| temp_trellis_rainfall_plot | 1.40 | 0.01 | 1.42 | |
| testSigs | 0 | 0 | 0 | |
| test_exposureAffected | 0 | 0 | 0 | |
| test_gene_list_in_exposures | 0 | 0 | 0 | |
| transform_rownames_R_to_MATLAB | 0 | 0 | 0 | |
| translate_to_hg19 | 0 | 0 | 0 | |
| trellis_rainfall_plot | 1.43 | 0.03 | 1.45 | |
| trellis_rainfall_plot_old | 1.46 | 0.01 | 1.48 | |
| variateExp | 1.74 | 0.18 | 1.91 | |
| variateExpSingle | 0.61 | 0.15 | 0.77 | |