Robert Scharpf
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/VanillaICE |
| git_branch: master |
| git_last_commit: 2f5627d |
| git_last_commit_date: 2022-01-05 19:29:16 -0400 (Wed, 05 Jan 2022) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:08:57 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the VanillaICE package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/VanillaICE.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2042/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| VanillaICE 1.57.2 (landing page) Robert Scharpf
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: VanillaICE |
| Version: 1.57.2 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL VanillaICE |
| StartedAt: 2022-03-17 16:11:42 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 16:13:14 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 91.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL VanillaICE
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'VanillaICE' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c rinit.c -o rinit.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c viterbi.c -o viterbi.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o VanillaICE.dll tmp.def rinit.o viterbi.o -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-VanillaICE/00new/VanillaICE/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
Creating a new generic function for 'distance' in package 'VanillaICE'
** help
*** installing help indices
converting help for package 'VanillaICE'
finding HTML links ... done
ArrayViews-class html
CopyNumScanParams html
finding level-2 HTML links ... done
EmissionParam-methods html
FilterParam-class html
HMM html
HMMList-class html
HMMList html
HmmGRanges-methods html
HmmParam html
HmmTrellisParam html
IO html
IdiogramParam-class html
IdiogramParams-class html
LogLik-class html
LogLik html
LowLevelSummaries html
NA_filter html
SnpArrayExperiment-class html
SnpExperiment html
SnpGRanges html
TransitionParam html
VanillaICE html
Viterbi-methods html
acf2 html
baumWelchUpdate html
calculateEmission html
cnvFilter html
doUpdate html
dropDuplicatedMapLocs html
dropSexChrom html
emission html
emissionParam html
REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-VanillaICE/00new/VanillaICE/help/emissionParam.html
filters html
getExampleSnpExperiment html
getHmmParams html
hmm2 html
hmmResults html
isHeterozygous html
matrixOrNULL-class html
numberFeatures html
parseSourceFile html
parsedPath html
plotting html
probability html
rescale html
robust-statistics html
segs html
snpArrayAssays html
snp_exp html
sourcePaths html
start-oligoSnpSet-method html
state-methods html
sweepMode html
threshold html
updateHmmParams html
viewports html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
** testing if installed package can be loaded from final location
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
** testing if installed package keeps a record of temporary installation path
* DONE (VanillaICE)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'methInheritSim' is missing or broken
done