| Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-04-12 11:07:06 -0400 (Tue, 12 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-03-17 r81925) -- "Unsuffered Consequences" | 4379 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-03-17 r81925 ucrt) -- "Unsuffered Consequences" | 4127 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-17 r81925) -- "Unsuffered Consequences" | 4190 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the PrecisionTrialDrawer package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PrecisionTrialDrawer.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1472/2113 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| PrecisionTrialDrawer 1.11.0 (landing page) Giorgio Melloni
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: PrecisionTrialDrawer |
| Version: 1.11.0 |
| Command: F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:PrecisionTrialDrawer.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings PrecisionTrialDrawer_1.11.0.tar.gz |
| StartedAt: 2022-04-12 02:18:13 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 02:21:42 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 209.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: PrecisionTrialDrawer.Rcheck |
| Warnings: 0 |
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### Running command:
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### F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:PrecisionTrialDrawer.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings PrecisionTrialDrawer_1.11.0.tar.gz
###
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* using log directory 'F:/biocbuild/bbs-3.15-bioc/meat/PrecisionTrialDrawer.Rcheck'
* using R Under development (unstable) (2022-03-17 r81925 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'PrecisionTrialDrawer/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'PrecisionTrialDrawer' version '1.11.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'PrecisionTrialDrawer' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
newCancerPanel 9.23 0.18 13.82
panelDesigner 7.64 0.03 12.20
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
PrecisionTrialDrawer.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL PrecisionTrialDrawer ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'PrecisionTrialDrawer' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis' ** testing if installed package can be loaded from final location Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis' ** testing if installed package keeps a record of temporary installation path * DONE (PrecisionTrialDrawer)
PrecisionTrialDrawer.Rcheck/PrecisionTrialDrawer-Ex.timings
| name | user | system | elapsed | |
| CancerPanel-class | 0 | 0 | 0 | |
| PrecisionTrialDrawer-package | 0.16 | 0.00 | 0.16 | |
| appendRepo | 0.54 | 0.02 | 0.55 | |
| coocMutexPlot | 2.10 | 0.08 | 2.19 | |
| coveragePlot | 0.22 | 0.01 | 0.23 | |
| coverageStackPlot | 0.27 | 0.03 | 0.30 | |
| cpArguments | 0.03 | 0.00 | 0.03 | |
| cpData | 0.09 | 0.00 | 0.09 | |
| cpDataSubset | 0.02 | 0.00 | 0.02 | |
| cpDesign | 0.07 | 0.00 | 0.08 | |
| cpFreq | 0.33 | 0.03 | 0.36 | |
| cpObj | 0.64 | 0.02 | 0.66 | |
| cpObj2 | 0.13 | 0.00 | 0.12 | |
| dataExtractor | 0.29 | 0.00 | 0.30 | |
| filterFusions | 0.33 | 0.00 | 0.33 | |
| filterMutations | 0.78 | 0.00 | 0.78 | |
| getAlterations | 0.32 | 0.02 | 0.40 | |
| newCancerPanel | 9.23 | 0.18 | 13.82 | |
| panelDesigner | 7.64 | 0.03 | 12.20 | |
| panelOptimizer | 0 | 0 | 0 | |
| panelexample | 0.02 | 0.00 | 0.02 | |
| propPowerSampleSize | 0.73 | 0.05 | 0.78 | |
| saturationPlot | 1.58 | 0.05 | 1.62 | |
| showCancerStudy | 0.01 | 0.00 | 0.03 | |
| showTumorType | 0.05 | 0.00 | 0.05 | |
| subsetAlterations | 0.45 | 0.00 | 0.45 | |
| survPowerSampleSize | 0.52 | 0.00 | 0.52 | |
| survPowerSampleSize1Arm | 0.56 | 0.03 | 0.59 | |