##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:OncoSimulR.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings OncoSimulR_3.4.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.15-bioc/meat/OncoSimulR.Rcheck'
* using R version 4.2.1 (2022-06-23 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'OncoSimulR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'OncoSimulR' version '3.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'OncoSimulR' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.3Mb
  sub-directories of 1Mb or more:
    libs   6.9Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'F:/biocbuild/bbs-3.15-bioc/R/library/OncoSimulR/libs/x64/OncoSimulR.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'F:/biocbuild/bbs-3.15-bioc/meat/OncoSimulR.Rcheck/00check.log'
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL OncoSimulR
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'OncoSimulR' ...
** using staged installation
** libs
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c FitnessLandscape/gamma.c -o FitnessLandscape/gamma.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c FitnessLandscape/landscape.c -o FitnessLandscape/landscape.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c FitnessLandscape/random.c -o FitnessLandscape/random.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c FitnessLandscape/sort.c -o FitnessLandscape/sort.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c FitnessLandscape/chain.c -o FitnessLandscape/chain.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c FitnessLandscape/input.c -o FitnessLandscape/input.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c FitnessLandscape/genotypes.c -o FitnessLandscape/genotypes.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c FitnessLandscape/ordered_pairs.c -o FitnessLandscape/ordered_pairs.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c FitnessLandscape/calculus.c -o FitnessLandscape/calculus.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c FitnessLandscape/vector.c -o FitnessLandscape/vector.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c FitnessLandscape/generalized_chain.c -o FitnessLandscape/generalized_chain.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c FitnessLandscape/LinearAlgebra.c -o FitnessLandscape/LinearAlgebra.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c FitnessLandscape/summary_statistics.c -o FitnessLandscape/summary_statistics.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c FitnessLandscape/epistasis_type.c -o FitnessLandscape/epistasis_type.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c FitnessLandscape/decomposition.c -o FitnessLandscape/decomposition.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c FitnessLandscape/models.c -o FitnessLandscape/models.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c FitnessLandscape/verbose.c -o FitnessLandscape/verbose.o
ar -r liblandscape.a FitnessLandscape/gamma.o FitnessLandscape/landscape.o FitnessLandscape/random.o FitnessLandscape/sort.o FitnessLandscape/chain.o FitnessLandscape/input.o FitnessLandscape/genotypes.o FitnessLandscape/ordered_pairs.o FitnessLandscape/calculus.o FitnessLandscape/vector.o FitnessLandscape/generalized_chain.o FitnessLandscape/LinearAlgebra.o FitnessLandscape/summary_statistics.o FitnessLandscape/epistasis_type.o FitnessLandscape/decomposition.o FitnessLandscape/models.o FitnessLandscape/verbose.o ;
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: creating liblandscape.a
ranlib liblandscape.a;
gcc  -O -Wall -o fl_statistics -I/FitnessLandscape/. -L. FitnessLandscape/main_fl_statistics.c -llandscape -lm;
gcc  -O -Wall -o fl_generate -I/FitnessLandscape/. -L. FitnessLandscape/main_fl_generate.c -llandscape -lm;
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -Wa,-mbig-obj -O3 -c BNB_nr.cpp -o BNB_nr.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c OncoSimulR_init.c -o OncoSimulR_init.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -Wa,-mbig-obj -O3 -c RcppExports.cpp -o RcppExports.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -Wa,-mbig-obj -O3 -c accessible_genotypes.cpp -o accessible_genotypes.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -Wa,-mbig-obj -O3 -c bnb_common.cpp -o bnb_common.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -Wa,-mbig-obj -O3 -c new_restrict.cpp -o new_restrict.o
g++ -shared -s -static-libgcc -o OncoSimulR.dll tmp.def BNB_nr.o OncoSimulR_init.o RcppExports.o accessible_genotypes.o bnb_common.o new_restrict.o -Wa,-mbig-obj -O3 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing via 'install.libs.R' to F:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-OncoSimulR/00new/OncoSimulR
[1] "/x64"
Installing fl_statistics.exe fl_generate.exe to F:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-OncoSimulR/00new/OncoSimulR/exec/x64
Installing library OncoSimulR.dll to F:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-OncoSimulR/00new/OncoSimulR/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (OncoSimulR)

R version 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(OncoSimulR)
> 
> test_check("OncoSimulR")

 Starting FDF-letter-fitness-order Wed Oct 19 02:36:46 2022 

exprtk parser error: 

Error[00] Position: 00 Type: [  Syntax Error] Msg: ERR197 - Undefined symbol: 'n_2_3' Expression: n_2_3

exprtk parser error: 

Error[00] Position: 00 Type: [  Syntax Error] Msg: ERR197 - Undefined symbol: 'f_2_3' Expression: f_2_3

 Ending FDF-small-fitness-specs Wed Oct 19 02:36:46 2022 
  Took  0.54 


 Starting LOD_POM at Wed Oct 19 02:36:46 2022 

 Ending LOD_POM at Wed Oct 19 02:37:02 2022 
  Took  15.88 


 Starting test.Z-all-fitness at Wed Oct 19 02:37:02 2022 

 Ending test.Z-all-fitness at Wed Oct 19 02:37:02 2022 
  Took  0.1 


 Starting test.Z-driver-counts at Wed Oct 19 02:37:02 2022 

 Ending test.Z-driver-counts at Wed Oct 19 02:37:03 2022 
  Took  0.16 


 Starting test.Z-fixation at Wed Oct 19 02:37:03 2022 

 Ending test.Z-fixation at Wed Oct 19 02:37:03 2022 
  Took  0.59 


 Starting test.Z-magellan at Wed Oct 19 02:37:03 2022 

 Ended test.Z-magellan at Wed Oct 19 02:37:05 2022 

 Starting test.Z-mutator at Wed Oct 19 02:37:05 2022 

 Ending test.Z-mutator at Wed Oct 19 02:37:05 2022 
  Took  0.38 


 Starting test.Z-mutatorFDF at Wed Oct 19 02:37:05 2022 

 Ending test.Z-mutatorFDF at Wed Oct 19 02:37:06 2022 
  Took  0.29 


 Starting test.Z-oncoSimulIndiv at Wed Oct 19 02:37:06 2022 

 Ending test.Z-oncoSimulIndiv at Wed Oct 19 02:37:07 2022 
  Took  1.39 


 Starting test.Z-oncoSimulIndivFDF at Wed Oct 19 02:37:07 2022 

 Ending test.Z-oncoSimulIndivFDF at Wed Oct 19 02:37:07 2022 
  Took  0.15 


 Starting test.Z-rfitness-landscape at Wed Oct 19 02:37:07 2022 

 Ending test.Z-rfitness-landscape at Wed Oct 19 02:37:07 2022 
  Took  0.16 


 Starting Z-sample-only-last tests Wed Oct 19 02:37:07 2022 

 Ending Z-sample-only-last tests Wed Oct 19 02:37:07 2022 
  Took  0 


 Starting Z-total-present-drivers tests Wed Oct 19 02:37:07 2022 

 Ending Z-total-present-drivers tests Wed Oct 19 02:37:09 2022 
  Took  1.36 


 Dummy empty test  Wed Oct 19 02:37:09 2022 

 Starting accessible_genotypes at Wed Oct 19 02:37:09 2022 

 Ending accessible_genotypes at Wed Oct 19 02:37:16 2022 
  Took  7.8 


 Starting all fitness at Wed Oct 19 02:37:16 2022
 Ending all-fitness at Wed Oct 19 02:37:22 2022 
  Took  5.74 


 Starting test.allFitnessEffectsFDF at Wed Oct 19 02:37:22 2022 

 Ending test.allFitnessEffectsFDF at Wed Oct 19 02:37:22 2022 
  Took  0.11 


 Starting test.allFitnessEffectsFDF at Wed Oct 19 02:37:22 2022 

 Ending test.allFitnessEffectsFDF at Wed Oct 19 02:37:23 2022 
  Took  0.4 


 Starting driverCounts at Wed Oct 19 02:37:23 2022
 Ending driverCounts at Wed Oct 19 02:37:30 2022 
  Took  7.63 


 Starting epist-order-modules at Wed Oct 19 02:37:30 2022
 Ending epist-order-modules at Wed Oct 19 02:37:30 2022 
  Took  0.03 


 Starting test.evaluatingGenotypesFDF at Wed Oct 19 02:37:30 2022 

 Ending test.evaluatingGenotypesFDF at Wed Oct 19 02:37:31 2022 
  Took  0.19 


 Starting exercise-plotting-code at Wed Oct 19 02:37:31 2022
 Ending exercise-plotting-code at Wed Oct 19 02:37:36 2022 
  Took  5.71 


 Starting exercise-rfitness at Wed Oct 19 02:37:36 2022 

 Ending exercise-rfitness at Wed Oct 19 02:37:50 2022 
  Took  13.63 


 Starting to_Magella at Wed Oct 19 02:37:50 2022 

 Ending to_Magella at Wed Oct 19 02:37:50 2022 
  Took  0.06 


 Starting fitness preds at Wed Oct 19 02:37:50 2022 

 Observed vs expected, case III

 done tries 1 

 Ending fitness preds long at Wed Oct 19 02:38:03 2022 
  Took  12.78 


 Starting fixation  at Wed Oct 19 02:38:03 2022 

 Ending fixation  at Wed Oct 19 02:38:54 2022 
  Took  51.05 


 Starting test.flfast-additional.R test at Wed Oct 19 02:38:54 2022
 Ending test.flfast-additional.R test at Wed Oct 19 02:38:56 2022 
  Took  1.65 


 Starting test.flfast-mutator.R test at Wed Oct 19 02:38:56 2022
 Finished test.flfast-mutator.R test at Wed Oct 19 02:39:00 2022 
  Took  4.89 


 Starting genotFitness at Wed Oct 19 02:39:00 2022 

 Ending genotFitness at Wed Oct 19 02:39:01 2022 
  Took  0.15 


 Starting genot_fitness_to_epistasis at Wed Oct 19 02:39:01 2022 

 Ending genot_fitness_to_epistasis at Wed Oct 19 02:39:01 2022 
  Took  0.03 


 Starting init-mutant tests Wed Oct 19 02:39:01 2022 

exprtk parser error: 

Error[00] Position: 18 Type: [  Syntax Error] Msg: ERR197 - Undefined symbol: 'f_2' Expression: 1.1 + 0.7*((f_1 + f_2) > 0.3)

 Ending init-mutant tests Wed Oct 19 02:39:12 2022 
  Took  11.03 


 Starting test.magellan at Wed Oct 19 02:39:12 2022 

 Ending test.magellan at Wed Oct 19 02:39:12 2022 
  Took  0.65 


 Starting test.modules-root-no-root at Wed Oct 19 02:39:12 2022 

 Ending test.modules-root-no-root at Wed Oct 19 02:39:12 2022 
  Took  0.06 


 Starting at mutPropGrowth  Wed Oct 19 02:39:12 2022 

 Ended test.mutPropGrowth:  Wed Oct 19 02:39:25 2022 
  Took  13.07 


 Starting test.mutator-oncoSimulSample.R test at Wed Oct 19 02:39:25 2022 

 Finished test.mutator-oncoSimulSample.R test at Wed Oct 19 02:39:37 2022 
  Took  11.36 seconds 


 Starting test.mutator.R test at Wed Oct 19 02:39:37 2022[1] 1.447758e-10
[1] 5.037738e-14

 Finished test.mutator.R test at Wed Oct 19 02:40:01 2022 
  Took  24.65 


 Starting test.mutatorFDF.R test at Wed Oct 19 02:40:01 2022
 Starting test.no-v1 at Wed Oct 19 02:40:02 2022 

 Ending test.no-v1 at Wed Oct 19 02:40:02 2022 
  Took  0.01 


 Starting oncoSimulIndiv-miscell tests Wed Oct 19 02:40:02 2022 

 Ending oncoSimulIndiv-miscell tests Wed Oct 19 02:40:17 2022 
  Took  15.2 


 Starting oncoSimulSample-failures tests Wed Oct 19 02:40:17 2022 

 Ending oncoSimulSample-failures tests Wed Oct 19 02:40:22 2022 
  Took  4.11 


 Starting oncoSimulSample-limits tests Wed Oct 19 02:40:22 2022 

 Ending oncoSimulSample-limits tests Wed Oct 19 02:40:22 2022 
  Took  0.56 


 Starting per-gene-mutation rates at Wed Oct 19 02:40:22 2022 

 Ending per-gene-mutation rates at Wed Oct 19 02:41:21 2022 
  Took  58.5 


 Starting plotFitnessLandscape at Wed Oct 19 02:41:21 2022
 Ending plotFitnessLandscape at Wed Oct 19 02:41:25 2022 
  Took  4.08 


 Starting poset-transformations tests Wed Oct 19 02:41:25 2022 

 Ending poset-transformations tests Wed Oct 19 02:41:38 2022 
  Took  12.85 


 Starting sample-prob Wed Oct 19 02:41:38 2022 
[1] 3.189095e-26
[1] 6.70587e-17
[1] 5.718279e-08
[1] 1.311807e-11
[1] 2.651847e-11
[1] 1.851301e-10
[1] 3.747045e-11
[1] 1.963869e-15
[1] 1.4452e-09
[1] 1.679178e-09
[1] 4.902546e-09
[1] 3.59442e-09

 Ending sample-prob tests Wed Oct 19 02:41:54 2022 
 Took  16.23 



 Starting samplePop tests Wed Oct 19 02:41:54 2022 

 Ending samplePop tests Wed Oct 19 02:42:06 2022 
  Took  11.78 


 Starting simuls-runs-examples tests Wed Oct 19 02:42:06 2022 

 Ending simuls-runs-examples tests Wed Oct 19 02:42:18 2022 
  Took  12.12 


 Starting warning-mutPropGrowth tests Wed Oct 19 02:42:18 2022 

 Ending warning-mutPropGrowth tests Wed Oct 19 02:42:20 2022 
  Took  1.28 


 Starting wide2long tests Wed Oct 19 02:42:20 2022 

 Ending wide2long tests Wed Oct 19 02:42:20 2022 
  Took  0.24 

[ FAIL 0 | WARN 1 | SKIP 6 | PASS 8198 ]

══ Skipped tests ═══════════════════════════════════════════════════════════════
• On Windows (1)
• empty test (5)

[ FAIL 0 | WARN 1 | SKIP 6 | PASS 8198 ]
> 
> proc.time()
   user  system elapsed 
 320.51    5.65  338.21