Denes Turei
| Snapshot Date: 2022-10-18 13:55:19 -0400 (Tue, 18 Oct 2022) |
| git_url: https://git.bioconductor.org/packages/OmnipathR |
| git_branch: RELEASE_3_15 |
| git_last_commit: fd6742c |
| git_last_commit_date: 2022-10-15 12:41:33 -0400 (Sat, 15 Oct 2022) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-10-19 13:20:37 -0400 (Wed, 19 Oct 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the OmnipathR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OmnipathR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1366/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| OmnipathR 3.4.7 (landing page) Denes Turei
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | TIMEOUT | OK | |||||||||
| Package: OmnipathR |
| Version: 3.4.7 |
| Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:OmnipathR.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings OmnipathR_3.4.7.tar.gz |
| StartedAt: 2022-10-18 20:56:39 -0400 (Tue, 18 Oct 2022) |
| EndedAt: 2022-10-18 21:23:23 -0400 (Tue, 18 Oct 2022) |
| EllapsedTime: 1603.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: OmnipathR.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:OmnipathR.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings OmnipathR_3.4.7.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.15-bioc/meat/OmnipathR.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘OmnipathR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘OmnipathR’ version ‘3.4.7’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OmnipathR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
‘rmarkdown’
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
[2022-10-18 20:57:05] [INFO] [OmnipathR] Initialized cache: `/home/biocbuild/.cache/OmnipathR`.
[2022-10-18 20:57:05] [TRACE] [OmnipathR] Running on a build server, wiping cache.
[2022-10-18 20:57:05] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/biocbuild/.cache/OmnipathR`.
[2022-10-18 20:57:05] [TRACE] [OmnipathR] Pandoc version: `2.5`.
[2022-10-18 20:57:05] [TRACE] [OmnipathR] Cache locked: FALSE
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
nichenet_lr_network 161.559 1.360 164.310
evex_download 97.772 2.428 147.902
nichenet_networks 67.066 1.103 75.467
simplify_intercell_network 55.529 1.270 66.020
nichenet_gr_network_evex 52.667 1.019 52.828
filter_intercell_network 50.290 0.997 62.613
unique_intercell_network 50.347 0.285 50.633
nichenet_signaling_network 40.603 2.391 49.801
nichenet_lr_network_omnipath 35.992 1.748 49.147
annotation_categories 35.609 0.046 38.084
bioplex_all 23.142 0.813 25.284
curated_ligrec_stats 20.625 2.798 107.218
consensuspathdb_raw_table 20.156 1.521 44.745
go_annot_download 13.726 1.332 14.804
pivot_annotations 13.106 1.272 45.799
preppi_download 10.659 2.080 52.807
preppi_filter 10.422 1.610 7.141
nichenet_signaling_network_evex 8.160 0.628 7.943
nichenet_gr_network_pathwaycommons 7.822 0.588 10.902
filter_intercell 6.781 0.885 14.330
pathwaycommons_download 6.719 0.515 9.523
extra_attr_values 6.893 0.300 11.345
filter_extra_attrs 6.890 0.297 7.810
ancestors 5.975 0.641 14.271
nichenet_gr_network 5.593 0.128 8.713
curated_ligand_receptor_interactions 4.782 0.652 22.643
with_extra_attrs 5.050 0.339 9.540
nichenet_gr_network_omnipath 5.101 0.136 8.371
import_intercell_network 4.726 0.261 11.509
nichenet_gr_network_harmonizome 4.292 0.209 6.033
hpo_download 4.019 0.449 7.825
giant_component 3.924 0.301 8.934
guide2pharma_download 2.828 0.308 7.957
filter_by_resource 2.171 0.347 6.323
kegg_pathway_download 2.443 0.040 18.779
print_interactions 2.222 0.235 10.451
enzsub_graph 2.052 0.159 6.168
pubmed_open 1.954 0.218 5.996
htridb_download 1.453 0.132 5.691
print_path_vs 1.371 0.123 5.471
nichenet_gr_network_trrust 1.394 0.064 10.749
import_all_interactions 1.122 0.122 5.633
all_uniprots 1.138 0.035 13.702
uniprot_full_id_mapping_table 0.961 0.004 13.031
translate_ids 0.833 0.057 13.266
annotated_network 0.608 0.097 5.501
trrust_download 0.576 0.015 10.428
kegg_info 0.422 0.016 5.418
uniprot_id_mapping_table 0.352 0.012 5.430
ramilowski_download 0.257 0.032 5.353
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.15-bioc/meat/OmnipathR.Rcheck/00check.log’
for details.
OmnipathR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL OmnipathR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’ * installing *source* package ‘OmnipathR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location [2022-10-18 15:31:00] [INFO] [OmnipathR] Initialized cache: `/home/biocbuild/.cache/OmnipathR`. [2022-10-18 15:31:00] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2022-10-18 15:31:00] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/biocbuild/.cache/OmnipathR`. [2022-10-18 15:31:00] [TRACE] [OmnipathR] Pandoc version: `2.5`. [2022-10-18 15:31:00] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package can be loaded from final location [2022-10-18 15:31:01] [INFO] [OmnipathR] Initialized cache: `/home/biocbuild/.cache/OmnipathR`. [2022-10-18 15:31:01] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2022-10-18 15:31:01] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/biocbuild/.cache/OmnipathR`. [2022-10-18 15:31:01] [TRACE] [OmnipathR] Pandoc version: `2.5`. [2022-10-18 15:31:01] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package keeps a record of temporary installation path * DONE (OmnipathR)
OmnipathR.Rcheck/tests/testthat.Rout
R version 4.2.1 (2022-06-23) -- "Funny-Looking Kid"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> #!/usr/bin/env Rscript
>
> #
> # This file is part of the `OmnipathR` R package
> #
> # Copyright
> # 2018-2022
> # Saez Lab, Uniklinik RWTH Aachen, Heidelberg University
> #
> # File author(s): Alberto Valdeolivas
> # Dénes Türei (turei.denes@gmail.com)
> # Attila Gábor
> #
> # Distributed under the MIT (Expat) License.
> # See accompanying file `LICENSE` or find a copy at
> # https://directory.fsf.org/wiki/License:Expat
> #
> # Website: https://saezlab.github.io/omnipathr
> # Git repo: https://github.com/saezlab/OmnipathR
> #
>
>
> library(testthat)
> library(OmnipathR)
[2022-10-18 21:22:29] [INFO] [OmnipathR] Initialized cache: `/home/biocbuild/.cache/OmnipathR`.
[2022-10-18 21:22:29] [TRACE] [OmnipathR] Running on a build server, wiping cache.
[2022-10-18 21:22:29] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/biocbuild/.cache/OmnipathR`.
[2022-10-18 21:22:29] [TRACE] [OmnipathR] Pandoc version: `2.5`.
[2022-10-18 21:22:29] [TRACE] [OmnipathR] Cache locked: FALSE
>
> test_check('OmnipathR')
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 34 ]
>
> proc.time()
user system elapsed
9.294 0.983 47.377
OmnipathR.Rcheck/OmnipathR-Ex.timings
| name | user | system | elapsed | |
| OmnipathR | 0.000 | 0.000 | 0.001 | |
| all_uniprots | 1.138 | 0.035 | 13.702 | |
| ancestors | 5.975 | 0.641 | 14.271 | |
| annotated_network | 0.608 | 0.097 | 5.501 | |
| annotation_categories | 35.609 | 0.046 | 38.084 | |
| bioplex1 | 1.340 | 0.077 | 2.243 | |
| bioplex2 | 1.851 | 0.133 | 3.060 | |
| bioplex3 | 3.147 | 0.383 | 4.756 | |
| bioplex_all | 23.142 | 0.813 | 25.284 | |
| bioplex_hct116_1 | 0.145 | 0.008 | 0.152 | |
| bma_motif_es | 0.310 | 0.053 | 1.437 | |
| bma_motif_vs | 0.171 | 0.009 | 0.871 | |
| consensuspathdb_download | 0.001 | 0.000 | 0.001 | |
| consensuspathdb_raw_table | 20.156 | 1.521 | 44.745 | |
| curated_ligand_receptor_interactions | 4.782 | 0.652 | 22.643 | |
| curated_ligrec_stats | 20.625 | 2.798 | 107.218 | |
| descendants | 1.465 | 0.180 | 1.646 | |
| enzsub_graph | 2.052 | 0.159 | 6.168 | |
| evex_download | 97.772 | 2.428 | 147.902 | |
| extra_attr_values | 6.893 | 0.300 | 11.345 | |
| extra_attrs | 2.728 | 0.120 | 2.848 | |
| extra_attrs_to_cols | 4.218 | 0.112 | 4.330 | |
| filter_by_resource | 2.171 | 0.347 | 6.323 | |
| filter_extra_attrs | 6.890 | 0.297 | 7.810 | |
| filter_intercell | 6.781 | 0.885 | 14.330 | |
| filter_intercell_network | 50.290 | 0.997 | 62.613 | |
| find_all_paths | 1.821 | 0.056 | 1.877 | |
| get_annotation_resources | 0.051 | 0.012 | 0.687 | |
| get_complex_genes | 1.060 | 0.105 | 4.743 | |
| get_complex_resources | 0.052 | 0.011 | 0.687 | |
| get_db | 0.501 | 0.040 | 0.980 | |
| get_enzsub_resources | 0.074 | 0.016 | 0.711 | |
| get_interaction_resources | 0.073 | 0.004 | 0.701 | |
| get_intercell_categories | 0.274 | 0.071 | 0.806 | |
| get_intercell_generic_categories | 0.025 | 0.004 | 0.029 | |
| get_intercell_resources | 0.069 | 0.012 | 0.792 | |
| get_ontology_db | 0.226 | 0.015 | 0.242 | |
| get_resources | 0.079 | 0.004 | 0.708 | |
| get_signed_ptms | 1.177 | 0.065 | 1.869 | |
| giant_component | 3.924 | 0.301 | 8.934 | |
| go_annot_download | 13.726 | 1.332 | 14.804 | |
| go_annot_slim | 0.000 | 0.001 | 0.000 | |
| go_ontology_download | 0.150 | 0.003 | 0.153 | |
| guide2pharma_download | 2.828 | 0.308 | 7.957 | |
| harmonizome_download | 0.361 | 0.032 | 0.653 | |
| has_extra_attrs | 3.199 | 0.088 | 3.287 | |
| hpo_download | 4.019 | 0.449 | 7.825 | |
| htridb_download | 1.453 | 0.132 | 5.691 | |
| import_all_interactions | 1.122 | 0.122 | 5.633 | |
| import_dorothea_interactions | 1.232 | 0.122 | 4.422 | |
| import_intercell_network | 4.726 | 0.261 | 11.509 | |
| import_kinaseextra_interactions | 0.908 | 0.097 | 4.440 | |
| import_ligrecextra_interactions | 0.584 | 0.077 | 3.282 | |
| import_lncrna_mrna_interactions | 0.542 | 0.046 | 1.662 | |
| import_mirnatarget_interactions | 0.709 | 0.035 | 3.394 | |
| import_omnipath_annotations | 0.373 | 0.020 | 1.469 | |
| import_omnipath_complexes | 0.564 | 0.013 | 3.584 | |
| import_omnipath_enzsub | 0.473 | 0.004 | 1.107 | |
| import_omnipath_interactions | 0.122 | 0.012 | 0.759 | |
| import_omnipath_intercell | 0.413 | 0.061 | 1.346 | |
| import_pathwayextra_interactions | 0.612 | 0.081 | 3.440 | |
| import_post_translational_interactions | 0.680 | 0.104 | 3.832 | |
| import_small_molecule_protein_interactions | 0.448 | 0.109 | 0.991 | |
| import_tf_mirna_interactions | 0.573 | 0.085 | 2.384 | |
| import_tf_target_interactions | 0.831 | 0.116 | 3.830 | |
| import_transcriptional_interactions | 1.232 | 0.095 | 4.434 | |
| inbiomap_download | 0.000 | 0.001 | 0.001 | |
| inbiomap_raw | 0.000 | 0.000 | 0.001 | |
| interaction_graph | 0.283 | 0.017 | 0.922 | |
| intercell_categories | 0.047 | 0.004 | 0.052 | |
| intercell_consensus_filter | 1.593 | 0.133 | 4.471 | |
| is_ontology_id | 0.001 | 0.000 | 0.000 | |
| kegg_info | 0.422 | 0.016 | 5.418 | |
| kegg_open | 0.002 | 0.001 | 0.002 | |
| kegg_pathway_annotations | 0.000 | 0.000 | 0.001 | |
| kegg_pathway_download | 2.443 | 0.040 | 18.779 | |
| kegg_pathway_list | 0.530 | 0.010 | 4.564 | |
| kegg_pathways_download | 0.001 | 0.000 | 0.000 | |
| kegg_picture | 0.135 | 0.013 | 2.261 | |
| kegg_process | 0.188 | 0.000 | 0.188 | |
| load_db | 0.266 | 0.008 | 0.274 | |
| nichenet_build_model | 0.001 | 0.000 | 0.001 | |
| nichenet_expression_data | 0.001 | 0.000 | 0.001 | |
| nichenet_gr_network | 5.593 | 0.128 | 8.713 | |
| nichenet_gr_network_evex | 52.667 | 1.019 | 52.828 | |
| nichenet_gr_network_harmonizome | 4.292 | 0.209 | 6.033 | |
| nichenet_gr_network_htridb | 0.060 | 0.000 | 0.059 | |
| nichenet_gr_network_omnipath | 5.101 | 0.136 | 8.371 | |
| nichenet_gr_network_pathwaycommons | 7.822 | 0.588 | 10.902 | |
| nichenet_gr_network_regnetwork | 0.238 | 0.008 | 0.738 | |
| nichenet_gr_network_remap | 0 | 0 | 0 | |
| nichenet_gr_network_trrust | 1.394 | 0.064 | 10.749 | |
| nichenet_ligand_activities | 0 | 0 | 0 | |
| nichenet_ligand_target_links | 0.000 | 0.001 | 0.000 | |
| nichenet_ligand_target_matrix | 0.000 | 0.000 | 0.001 | |
| nichenet_lr_network | 161.559 | 1.360 | 164.310 | |
| nichenet_lr_network_guide2pharma | 0.586 | 0.007 | 0.593 | |
| nichenet_lr_network_omnipath | 35.992 | 1.748 | 49.147 | |
| nichenet_lr_network_ramilowski | 0.151 | 0.016 | 0.167 | |
| nichenet_main | 0 | 0 | 0 | |
| nichenet_networks | 67.066 | 1.103 | 75.467 | |
| nichenet_optimization | 0 | 0 | 0 | |
| nichenet_remove_orphan_ligands | 0 | 0 | 0 | |
| nichenet_results_dir | 0 | 0 | 0 | |
| nichenet_signaling_network | 40.603 | 2.391 | 49.801 | |
| nichenet_signaling_network_cpdb | 0 | 0 | 0 | |
| nichenet_signaling_network_evex | 8.160 | 0.628 | 7.943 | |
| nichenet_signaling_network_harmonizome | 0.130 | 0.008 | 0.136 | |
| nichenet_signaling_network_inbiomap | 0.000 | 0.000 | 0.001 | |
| nichenet_signaling_network_omnipath | 4.477 | 0.055 | 4.532 | |
| nichenet_signaling_network_pathwaycommons | 2.244 | 0.043 | 2.288 | |
| nichenet_signaling_network_vinayagam | 0.384 | 0.045 | 0.429 | |
| nichenet_test | 0.001 | 0.000 | 0.000 | |
| nichenet_workarounds | 0.000 | 0.000 | 0.001 | |
| obo_parser | 0.232 | 0.020 | 0.407 | |
| omnipath_cache_autoclean | 0.001 | 0.000 | 0.000 | |
| omnipath_cache_clean | 0.005 | 0.000 | 0.005 | |
| omnipath_cache_clean_db | 0.087 | 0.000 | 0.087 | |
| omnipath_cache_download_ready | 0.542 | 0.031 | 0.627 | |
| omnipath_cache_filter_versions | 0.042 | 0.004 | 0.062 | |
| omnipath_cache_get | 0.023 | 0.003 | 0.027 | |
| omnipath_cache_key | 0 | 0 | 0 | |
| omnipath_cache_latest_or_new | 0.019 | 0.004 | 0.023 | |
| omnipath_cache_load | 0.644 | 0.029 | 3.478 | |
| omnipath_cache_move_in | 0.070 | 0.008 | 0.104 | |
| omnipath_cache_remove | 0.051 | 0.000 | 0.097 | |
| omnipath_cache_save | 0.102 | 0.004 | 0.342 | |
| omnipath_cache_search | 0 | 0 | 0 | |
| omnipath_cache_set_ext | 0.041 | 0.000 | 0.060 | |
| omnipath_cache_update_status | 0.096 | 0.004 | 0.101 | |
| omnipath_cache_wipe | 0 | 0 | 0 | |
| omnipath_get_config_path | 0.000 | 0.000 | 0.001 | |
| omnipath_load_config | 0.000 | 0.000 | 0.001 | |
| omnipath_log | 0.001 | 0.000 | 0.000 | |
| omnipath_logfile | 0.001 | 0.000 | 0.001 | |
| omnipath_msg | 0.007 | 0.000 | 0.007 | |
| omnipath_reset_config | 0.001 | 0.000 | 0.000 | |
| omnipath_save_config | 0 | 0 | 0 | |
| omnipath_set_cachedir | 0.006 | 0.000 | 0.006 | |
| omnipath_set_console_loglevel | 0.000 | 0.001 | 0.001 | |
| omnipath_set_logfile_loglevel | 0.000 | 0.001 | 0.001 | |
| omnipath_set_loglevel | 0.001 | 0.000 | 0.000 | |
| omnipath_show_db | 0.076 | 0.000 | 0.075 | |
| omnipath_unlock_cache_db | 0.001 | 0.000 | 0.000 | |
| ontology_ensure_id | 0.012 | 0.004 | 0.015 | |
| ontology_ensure_name | 0.015 | 0.000 | 0.016 | |
| ontology_name_id | 0.034 | 0.000 | 0.034 | |
| pathwaycommons_download | 6.719 | 0.515 | 9.523 | |
| pivot_annotations | 13.106 | 1.272 | 45.799 | |
| preppi_download | 10.659 | 2.080 | 52.807 | |
| preppi_filter | 10.422 | 1.610 | 7.141 | |
| print_bma_motif_es | 0.272 | 0.105 | 1.612 | |
| print_bma_motif_vs | 0.118 | 0.013 | 0.751 | |
| print_interactions | 2.222 | 0.235 | 10.451 | |
| print_path_es | 0.428 | 0.105 | 3.054 | |
| print_path_vs | 1.371 | 0.123 | 5.471 | |
| pubmed_open | 1.954 | 0.218 | 5.996 | |
| ramilowski_download | 0.257 | 0.032 | 5.353 | |
| regnetwork_directions | 0.056 | 0.004 | 0.209 | |
| regnetwork_download | 0.049 | 0.008 | 0.199 | |
| relations_list_to_table | 0.135 | 0.004 | 0.288 | |
| relations_table_to_graph | 0.095 | 0.008 | 0.104 | |
| relations_table_to_list | 0.191 | 0.012 | 0.325 | |
| remap_dorothea_download | 0.233 | 0.005 | 0.731 | |
| remap_filtered | 0.000 | 0.000 | 0.001 | |
| remap_tf_target_download | 0 | 0 | 0 | |
| resources_colname | 0.686 | 0.076 | 4.580 | |
| simplify_intercell_network | 55.529 | 1.270 | 66.020 | |
| swap_relations | 0.150 | 0.001 | 0.405 | |
| tfcensus_download | 0.452 | 0.015 | 0.684 | |
| translate_ids | 0.833 | 0.057 | 13.266 | |
| trrust_download | 0.576 | 0.015 | 10.428 | |
| uniprot_full_id_mapping_table | 0.961 | 0.004 | 13.031 | |
| uniprot_id_mapping_table | 0.352 | 0.012 | 5.430 | |
| unique_intercell_network | 50.347 | 0.285 | 50.633 | |
| vinayagam_download | 0.505 | 0.056 | 3.066 | |
| walk_ontology_tree | 0.470 | 0.019 | 0.489 | |
| with_extra_attrs | 5.050 | 0.339 | 9.540 | |
| with_references | 0.417 | 0.121 | 2.786 | |
| zenodo_download | 0.000 | 0.001 | 0.000 | |