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This page was generated on 2022-03-18 11:08:07 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for MSstatsLOBD on riesling1


To the developers/maintainers of the MSstatsLOBD package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MSstatsLOBD.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1236/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MSstatsLOBD 1.3.0  (landing page)
Devon Kohler
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/MSstatsLOBD
git_branch: master
git_last_commit: 2edb13f
git_last_commit_date: 2021-10-26 13:10:26 -0400 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: MSstatsLOBD
Version: 1.3.0
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:MSstatsLOBD.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings MSstatsLOBD_1.3.0.tar.gz
StartedAt: 2022-03-17 19:40:45 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 19:41:29 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 43.5 seconds
RetCode: 0
Status:   OK  
CheckDir: MSstatsLOBD.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:MSstatsLOBD.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings MSstatsLOBD_1.3.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/MSstatsLOBD.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MSstatsLOBD/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MSstatsLOBD' version '1.3.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MSstatsLOBD' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
'LinkingTo' field is unused: package has no 'src' directory
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'tinytest.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbuild/bbs-3.15-bioc/meat/MSstatsLOBD.Rcheck/00check.log'
for details.

Installation output

MSstatsLOBD.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL MSstatsLOBD
###
##############################################################################
##############################################################################


* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'MSstatsLOBD' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MSstatsLOBD'
    finding HTML links ... done
    linear_quantlim                         html  
    nonlinear_quantlim                      html  
    plot_quantlim                           html  
    raw_data                                html  
    spikeindata                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MSstatsLOBD)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'MetaboCoreUtils' is missing or broken
 done

Tests output

MSstatsLOBD.Rcheck/tests/tinytest.Rout


R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> 
> if ( requireNamespace("tinytest", quietly=TRUE) ){
+   tinytest::test_package("MSstatsLOBD")
+ }

test_MSstatsLOBD.R............    0 tests    %%%%
test_MSstatsLOBD.R............    0 tests    
test_MSstatsLOBD.R............    1 tests OK 
test_MSstatsLOBD.R............    2 tests OK 
test_MSstatsLOBD.R............    3 tests OK 
test_MSstatsLOBD.R............    4 tests OK 
test_MSstatsLOBD.R............    5 tests OK 
test_MSstatsLOBD.R............    6 tests OK 
test_MSstatsLOBD.R............    7 tests OK 
test_MSstatsLOBD.R............    8 tests OK 
test_MSstatsLOBD.R............    9 tests OK 
test_MSstatsLOBD.R............   10 tests OK 
test_MSstatsLOBD.R............   11 tests OK %%%%
test_MSstatsLOBD.R............   11 tests OK 
test_MSstatsLOBD.R............   12 tests OK 
test_MSstatsLOBD.R............   13 tests OK 
test_MSstatsLOBD.R............   14 tests OK 
test_MSstatsLOBD.R............   15 tests OK 
test_MSstatsLOBD.R............   16 tests OK 
test_MSstatsLOBD.R............   17 tests OK 
test_MSstatsLOBD.R............   18 tests OK 
test_MSstatsLOBD.R............   19 tests OK 
test_MSstatsLOBD.R............   20 tests OK 
test_MSstatsLOBD.R............   21 tests OK 
test_MSstatsLOBD.R............   22 tests OK 
test_MSstatsLOBD.R............   22 tests OK 
test_MSstatsLOBD.R............   23 tests OK 
test_MSstatsLOBD.R............   24 tests OK 
test_MSstatsLOBD.R............   25 tests OK 
test_MSstatsLOBD.R............   26 tests OK 
test_MSstatsLOBD.R............   27 tests OK 
test_MSstatsLOBD.R............   27 tests OK 
test_MSstatsLOBD.R............   28 tests OK 
test_MSstatsLOBD.R............   29 tests OK 
test_MSstatsLOBD.R............   30 tests OK 
test_MSstatsLOBD.R............   31 tests OK 0.5s
All ok, 31 results (0.6s)
There were 16 warnings (use warnings() to see them)
> 
> 
> proc.time()
   user  system elapsed 
   1.43    0.12    1.62

Example timings

MSstatsLOBD.Rcheck/MSstatsLOBD-Ex.timings

nameusersystemelapsed
linear_quantlim0.110.020.13
nonlinear_quantlim0.190.010.20
plot_quantlim0.960.051.00
raw_data0.010.000.01
spikeindata0.020.000.02