Kristian K Ullrich
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/MSA2dist |
| git_branch: master |
| git_last_commit: a7cdd79 |
| git_last_commit_date: 2022-01-27 15:21:52 -0400 (Thu, 27 Jan 2022) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:08:05 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the MSA2dist package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MSA2dist.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1217/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MSA2dist 0.99.2 (landing page) Kristian K Ullrich
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: MSA2dist |
| Version: 0.99.2 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL MSA2dist |
| StartedAt: 2022-03-17 15:53:14 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 15:54:19 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 65.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL MSA2dist
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'MSA2dist' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppThread/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppThread/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c rcpp_distSTRING.cpp -o rcpp_distSTRING.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppThread/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c rcpp_pairwiseDeletionAA.cpp -o rcpp_pairwiseDeletionAA.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppThread/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c rcpp_pairwiseDeletionDNA.cpp -o rcpp_pairwiseDeletionDNA.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o MSA2dist.dll tmp.def RcppExports.o rcpp_distSTRING.o rcpp_pairwiseDeletionAA.o rcpp_pairwiseDeletionDNA.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-MSA2dist/00new/MSA2dist/libs/x64
** R
** data
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'Rcpp::LdFlags' by 'RcppThread::LdFlags' when loading 'MSA2dist'
** help
*** installing help indices
converting help for package 'MSA2dist'
finding HTML links ... done
AAMatrix-data html
GENETIC_CODE_TCAG html
aabin2aastring html
aastring2aabin html
aastring2aln html
aastring2dist html
addmask2string html
addpop2string html
addpos2string html
addregion2string html
aln2aastring html
aln2dnastring html
cds2aa html
codon2numberAMBIG html
codon2numberTCAG html
codonmat2pnps html
codonmat2xy html
compareCodons html
dnabin2dnastring html
dnastring2aln html
dnastring2codonmat html
dnastring2dist html
dnastring2dnabin html
dnastring2kaks html
getmask html
getpos html
globalDeletion html
granthamMatrix html
hiv-data html
iupac-data html
iupacMatrix html
popinteger html
popnames html
rcpp_distSTRING html
rcpp_pairwiseDeletionAA html
rcpp_pairwiseDeletionDNA html
region html
regionused html
string2region html
subString html
uptriidx html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'Rcpp::LdFlags' by 'RcppThread::LdFlags' when loading 'MSA2dist'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'Rcpp::LdFlags' by 'RcppThread::LdFlags' when loading 'MSA2dist'
** testing if installed package keeps a record of temporary installation path
* DONE (MSA2dist)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'npGSEA' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'transcriptogramer' is missing or broken
done