| Back to Build/check report for BioC 3.14 annotations |
|
This page was generated on 2022-04-13 06:00:07 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the ENCODExplorerData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 12/33 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| ENCODExplorerData 0.99.5 (landing page) Eric Fournier
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | ||||||||
| Package: ENCODExplorerData |
| Version: 0.99.5 |
| Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:ENCODExplorerData.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings ENCODExplorerData_0.99.5.tar.gz |
| StartedAt: 2022-04-13 03:02:43 -0400 (Wed, 13 Apr 2022) |
| EndedAt: 2022-04-13 03:04:14 -0400 (Wed, 13 Apr 2022) |
| EllapsedTime: 91.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ENCODExplorerData.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:ENCODExplorerData.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings ENCODExplorerData_0.99.5.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-data-annotation/meat/ENCODExplorerData.Rcheck’
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ENCODExplorerData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ENCODExplorerData’ version ‘0.99.5’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ENCODExplorerData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
encode_df_full 42.551 2.024 45.366
encode_df_lite 15.961 0.676 17.080
get_schemas 2.805 0.367 6.563
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
ENCODExplorerData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL ENCODExplorerData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’ * installing *source* package ‘ENCODExplorerData’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ENCODExplorerData)
ENCODExplorerData.Rcheck/tests/runTests.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> #Run all tests in the ENCODExplorer package
> BiocGenerics:::testPackage("ENCODExplorerData")
RUNIT TEST PROTOCOL -- Wed Apr 13 03:04:12 2022
***********************************************
Number of test functions: 9
Number of errors: 0
Number of failures: 0
1 Test Suite :
ENCODExplorerData RUnit Tests - 9 test functions, 0 errors, 0 failures
Number of test functions: 9
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
0.451 0.032 0.465
ENCODExplorerData.Rcheck/ENCODExplorerData-Ex.timings
| name | user | system | elapsed | |
| build_file_db_from_raw_tables | 0 | 0 | 0 | |
| clean_table | 0.140 | 0.000 | 1.871 | |
| encode_df_full | 42.551 | 2.024 | 45.366 | |
| encode_df_lite | 15.961 | 0.676 | 17.080 | |
| fetch_and_clean_raw_ENCODE_tables | 0.071 | 0.007 | 1.514 | |
| generate_encode_df_full | 0 | 0 | 0 | |
| generate_encode_df_lite | 0 | 0 | 0 | |
| get_encode_types | 0.022 | 0.000 | 0.298 | |
| get_schema_urls | 0.030 | 0.008 | 0.096 | |
| get_schemas | 2.805 | 0.367 | 6.563 | |