Dongmin Jung
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/ttgsea |
| git_branch: RELEASE_3_14 |
| git_last_commit: bdfd91e |
| git_last_commit_date: 2021-12-14 18:58:49 -0400 (Tue, 14 Dec 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:07:31 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the ttgsea package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ttgsea.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2014/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ttgsea 1.2.1 (landing page) Dongmin Jung
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: ttgsea |
| Version: 1.2.1 |
| Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ttgsea.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings ttgsea_1.2.1.tar.gz |
| StartedAt: 2022-04-13 04:29:45 -0400 (Wed, 13 Apr 2022) |
| EndedAt: 2022-04-13 04:34:07 -0400 (Wed, 13 Apr 2022) |
| EllapsedTime: 262.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ttgsea.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ttgsea.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings ttgsea_1.2.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/ttgsea.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ttgsea/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ttgsea' version '1.2.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ttgsea' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
text_token 4.23 0.39 22.19
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
predict_model 22.89 0.73 26.80
fit_model 20.25 0.71 28.22
text_token 2.64 0.14 18.30
token_vector 2.67 0.08 17.92
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
ttgsea.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ttgsea_1.2.1.tar.gz && rm -rf ttgsea.buildbin-libdir && mkdir ttgsea.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ttgsea.buildbin-libdir ttgsea_1.2.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ttgsea_1.2.1.zip && rm ttgsea_1.2.1.tar.gz ttgsea_1.2.1.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
30 140k 30 44361 0 0 282k 0 --:--:-- --:--:-- --:--:-- 283k
100 140k 100 140k 0 0 236k 0 --:--:-- --:--:-- --:--:-- 236k
install for i386
* installing *source* package 'ttgsea' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ttgsea'
finding HTML links ... done
bi_gru html
bi_lstm html
fit_model html
metric_pearson_correlation html
plot_model html
predict_model html
sampling_generator html
text_token html
token_vector html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ttgsea' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ttgsea' as ttgsea_1.2.1.zip
* DONE (ttgsea)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'ttgsea' successfully unpacked and MD5 sums checked
|
ttgsea.Rcheck/tests_i386/testthat.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(ttgsea)
Loading required package: keras
>
> test_check("ttgsea")
[ FAIL 0 | WARN 0 | SKIP 13 | PASS 0 ]
== Skipped tests ===============================================================
* Python is not available on this system (13)
[ FAIL 0 | WARN 0 | SKIP 13 | PASS 0 ]
>
> proc.time()
user system elapsed
4.92 0.43 12.68
|
ttgsea.Rcheck/tests_x64/testthat.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(ttgsea)
Loading required package: keras
>
> test_check("ttgsea")
2022-04-13 04:33:48.335148: I tensorflow/core/platform/cpu_feature_guard.cc:142] Your CPU supports instructions that this TensorFlow binary was not compiled to use: AVX2
Train on 1420 samples
32/1420 [..............................] - ETA: 2:07 - loss: 1.3867 - pearson_correlation: 0.0276
96/1420 [=>............................] - ETA: 41s - loss: 1.5857 - pearson_correlation: 0.0769
160/1420 [==>...........................] - ETA: 24s - loss: 1.5459 - pearson_correlation: 0.0428
224/1420 [===>..........................] - ETA: 17s - loss: 1.5235 - pearson_correlation: 0.0299
288/1420 [=====>........................] - ETA: 12s - loss: 1.5351 - pearson_correlation: 0.0030
352/1420 [======>.......................] - ETA: 10s - loss: 1.5100 - pearson_correlation: 0.0168
416/1420 [=======>......................] - ETA: 8s - loss: 1.5534 - pearson_correlation: 0.0361
480/1420 [=========>....................] - ETA: 6s - loss: 1.5562 - pearson_correlation: 0.0385
512/1420 [=========>....................] - ETA: 6s - loss: 1.5922 - pearson_correlation: 0.0298
576/1420 [===========>..................] - ETA: 5s - loss: 1.5830 - pearson_correlation: 0.0412
640/1420 [============>.................] - ETA: 4s - loss: 1.5684 - pearson_correlation: 0.0320
704/1420 [=============>................] - ETA: 3s - loss: 1.5721 - pearson_correlation: 0.0429
768/1420 [===============>..............] - ETA: 3s - loss: 1.5739 - pearson_correlation: 0.0620
832/1420 [================>.............] - ETA: 2s - loss: 1.5808 - pearson_correlation: 0.0676
896/1420 [=================>............] - ETA: 2s - loss: 1.5837 - pearson_correlation: 0.0769
960/1420 [===================>..........] - ETA: 2s - loss: 1.5591 - pearson_correlation: 0.0759
1024/1420 [====================>.........] - ETA: 1s - loss: 1.5529 - pearson_correlation: 0.0709
1088/1420 [=====================>........] - ETA: 1s - loss: 1.5573 - pearson_correlation: 0.0809
1152/1420 [=======================>......] - ETA: 1s - loss: 1.5522 - pearson_correlation: 0.0865
1216/1420 [========================>.....] - ETA: 0s - loss: 1.5563 - pearson_correlation: 0.0900
1280/1420 [==========================>...] - ETA: 0s - loss: 1.5602 - pearson_correlation: 0.0982
1344/1420 [===========================>..] - ETA: 0s - loss: 1.5575 - pearson_correlation: 0.1015
1408/1420 [============================>.] - ETA: 0s - loss: 1.5561 - pearson_correlation: 0.1014
1420/1420 [==============================] - 5s 4ms/sample - loss: 1.5546 - pearson_correlation: 0.1115
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ]
>
> proc.time()
user system elapsed
41.14 2.29 27.46
|
|
ttgsea.Rcheck/examples_i386/ttgsea-Ex.timings
|
ttgsea.Rcheck/examples_x64/ttgsea-Ex.timings
|