Sebastian Bauer
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/mgsa |
| git_branch: RELEASE_3_14 |
| git_last_commit: 1e5d21e |
| git_last_commit_date: 2021-10-26 11:57:50 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:53 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the mgsa package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mgsa.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1136/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| mgsa 1.42.0 (landing page) Sebastian Bauer
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: mgsa |
| Version: 1.42.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/mgsa_1.42.0.tar.gz && rm -rf mgsa.buildbin-libdir && mkdir mgsa.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mgsa.buildbin-libdir mgsa_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL mgsa_1.42.0.zip && rm mgsa_1.42.0.tar.gz mgsa_1.42.0.zip |
| StartedAt: 2022-04-12 04:04:14 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 04:05:55 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 100.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/mgsa_1.42.0.tar.gz && rm -rf mgsa.buildbin-libdir && mkdir mgsa.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mgsa.buildbin-libdir mgsa_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL mgsa_1.42.0.zip && rm mgsa_1.42.0.tar.gz mgsa_1.42.0.zip
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install for i386
* installing *source* package 'mgsa' ...
** using staged installation
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c mgsa-core.c -o mgsa-core.o
mgsa-core.c: In function 'ts_R_alloc':
mgsa-core.c:56: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
#pragma omp critical
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c mgsa.c -o mgsa.o
mgsa.c: In function 'mgsa_mcmc':
mgsa.c:552: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
#pragma omp parallel for
mgsa.c:558: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
#pragma omp critical
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c mt.c -o mt.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o mgsa.dll tmp.def mgsa-core.o mgsa.o mt.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/mgsa.buildbin-libdir/00LOCK-mgsa/00new/mgsa/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'mgsa'
finding HTML links ... done
MgsaGoSets-class html
MgsaMcmcResults-class html
MgsaResults-class html
MgsaSets-class html
alphaMcmcPost-methods html
alphaPost-methods html
betaMcmcPost-methods html
betaPost-methods html
createMgsaGoSets html
example-go html
example-o html
itemAnnotations-methods html
itemIndices-methods html
length-methods html
mgsa-methods html
mgsa-package html
nsamples-methods html
pMcmcPost-methods html
pPost-methods html
plot-MgsaResults-method html
populationSize-methods html
readGAF html
restarts-methods html
setAnnotations-methods html
setsMcmcPost-methods html
setsResults-methods html
show-MgsaResults-method html
show-MgsaSets-method html
steps-methods html
studySetSizeInPopulation-methods html
subMgsaSets-methods html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'mgsa' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c mgsa-core.c -o mgsa-core.o
mgsa-core.c: In function 'ts_R_alloc':
mgsa-core.c:56: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
#pragma omp critical
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c mgsa.c -o mgsa.o
mgsa.c: In function 'mgsa_mcmc':
mgsa.c:552: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
#pragma omp parallel for
mgsa.c:558: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
#pragma omp critical
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c mt.c -o mt.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o mgsa.dll tmp.def mgsa-core.o mgsa.o mt.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/mgsa.buildbin-libdir/mgsa/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'mgsa' as mgsa_1.42.0.zip
* DONE (mgsa)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'mgsa' successfully unpacked and MD5 sums checked