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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:goSTAG.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings goSTAG_1.18.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/goSTAG.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'goSTAG/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'goSTAG' version '1.18.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'goSTAG' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                               user system elapsed
performGOEnrichment           22.95   0.19   23.16
groupClusters                 22.61   0.11   22.73
annotateClusters              20.92   0.13   21.05
goSTAG-package                20.78   0.03   20.81
performHierarchicalClustering 19.66   0.18   19.84
plotHeatmap                   19.23   0.00   19.24
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                               user system elapsed
groupClusters                 25.14   0.01   25.15
annotateClusters              22.98   0.34   23.33
goSTAG-package                21.67   0.06   21.75
plotHeatmap                   20.97   0.02   20.99
performGOEnrichment           20.61   0.00   20.64
performHierarchicalClustering 19.54   0.02   19.56
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/goSTAG_1.18.0.tar.gz && rm -rf goSTAG.buildbin-libdir && mkdir goSTAG.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=goSTAG.buildbin-libdir goSTAG_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL goSTAG_1.18.0.zip && rm goSTAG_1.18.0.tar.gz goSTAG_1.18.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 32 1576k   32  510k    0     0   622k      0  0:00:02 --:--:--  0:00:02  622k
100 1576k  100 1576k    0     0   987k      0  0:00:01  0:00:01 --:--:--  987k

install for i386

* installing *source* package 'goSTAG' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'goSTAG'
    finding HTML links ... done
    annotateClusters                        html  
    goSTAG-package                          html  
    goSTAG_example_gene_lists               html  
    goSTAG_go_genes_human                   html  
    goSTAG_go_genes_mouse                   html  
    goSTAG_go_genes_rat                     html  
    groupClusters                           html  
    loadGOTerms                             html  
    loadGeneLists                           html  
    performGOEnrichment                     html  
    performHierarchicalClustering           html  
    plotHeatmap                             html  
    rat_cancer_therapeutics_gene_lists      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'goSTAG' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'goSTAG' as goSTAG_1.18.0.zip
* DONE (goSTAG)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'goSTAG' successfully unpacked and MD5 sums checked