VJ Carey
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/erma |
| git_branch: RELEASE_3_14 |
| git_last_commit: 8ff4f3c |
| git_last_commit_date: 2021-10-26 12:21:07 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:31 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the erma package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/erma.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 602/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| erma 1.10.0 (landing page) VJ Carey
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: erma |
| Version: 1.10.0 |
| Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:erma.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings erma_1.10.0.tar.gz |
| StartedAt: 2022-04-12 19:23:53 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 19:32:57 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 544.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: erma.Rcheck |
| Warnings: 0 |
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### Running command:
###
### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:erma.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings erma_1.10.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/erma.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'erma/DESCRIPTION' ... OK
* this is package 'erma' version '1.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'erma' can be installed ... OK
* checking installed package size ... NOTE
installed size is 199.3Mb
sub-directories of 1Mb or more:
bed_tabix 161.4Mb
data 37.1Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
geneTxRange: no visible global function definition for 'select'
genemodelOLD: no visible binding for global variable 'exonsBy'
stateProfile: no visible binding for global variable 'states_25'
stateProfile: no visible binding for global variable 'short_celltype'
stateProfile: no visible binding for global variable 'name'
statesByRange: no visible binding for global variable 'mod'
statesByRange: no visible binding for global variable 'upstream'
statesByRange: no visible binding for global variable 'downstream'
statesByRange : <anonymous>: no visible binding for global variable
'tss'
statesByRange: no visible binding for global variable 'states_25'
Undefined global functions or variables:
downstream exonsBy mod name select short_celltype states_25 tss
upstream
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
erma-package 9.89 0.66 27.02
stateProfile 3.62 0.09 22.33
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
erma-package 8.94 0.22 30.75
stateProfile 3.89 0.05 22.78
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'C:/Users/biocbuild/bbs-3.14-bioc/meat/erma.Rcheck/00check.log'
for details.
erma.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/erma_1.10.0.tar.gz && rm -rf erma.buildbin-libdir && mkdir erma.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=erma.buildbin-libdir erma_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL erma_1.10.0.zip && rm erma_1.10.0.tar.gz erma_1.10.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 197M 0 829k 0 0 1169k 0 0:02:52 --:--:-- 0:02:52 1169k
1 197M 1 2912k 0 0 1704k 0 0:01:58 0:00:01 0:01:57 1703k
2 197M 2 5842k 0 0 2156k 0 0:01:33 0:00:02 0:01:31 2156k
4 197M 4 9712k 0 0 2631k 0 0:01:16 0:00:03 0:01:13 2631k
7 197M 7 13.9M 0 0 3055k 0 0:01:06 0:00:04 0:01:02 3055k
9 197M 9 19.3M 0 0 3490k 0 0:00:57 0:00:05 0:00:52 3820k
13 197M 13 25.7M 0 0 3938k 0 0:00:51 0:00:06 0:00:45 4704k
16 197M 16 33.1M 0 0 4406k 0 0:00:45 0:00:07 0:00:38 5630k
20 197M 20 41.0M 0 0 4843k 0 0:00:41 0:00:08 0:00:33 6477k
25 197M 25 49.4M 0 0 5213k 0 0:00:38 0:00:09 0:00:29 7225k
28 197M 28 56.5M 0 0 5412k 0 0:00:37 0:00:10 0:00:27 7598k
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32 197M 32 64.4M 0 0 5193k 0 0:00:38 0:00:12 0:00:26 6401k
34 197M 34 68.4M 0 0 5112k 0 0:00:39 0:00:13 0:00:26 5578k
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38 197M 38 75.3M 0 0 4916k 0 0:00:41 0:00:15 0:00:26 3852k
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52 197M 52 104M 0 0 4699k 0 0:00:42 0:00:22 0:00:20 3991k
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56 197M 56 112M 0 0 4650k 0 0:00:43 0:00:24 0:00:19 4584k
59 197M 59 117M 0 0 4679k 0 0:00:43 0:00:25 0:00:18 4861k
62 197M 62 123M 0 0 4724k 0 0:00:42 0:00:26 0:00:16 5078k
64 197M 64 126M 0 0 4692k 0 0:00:43 0:00:27 0:00:16 4661k
66 197M 66 131M 0 0 4692k 0 0:00:43 0:00:28 0:00:15 4852k
69 197M 69 137M 0 0 4727k 0 0:00:42 0:00:29 0:00:13 5103k
71 197M 71 140M 0 0 4702k 0 0:00:42 0:00:30 0:00:12 4821k
73 197M 73 145M 0 0 4687k 0 0:00:43 0:00:31 0:00:12 4492k
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76 197M 76 151M 0 0 4605k 0 0:00:43 0:00:33 0:00:10 4103k
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81 197M 81 161M 0 0 4634k 0 0:00:43 0:00:35 0:00:08 4215k
84 197M 84 167M 0 0 4675k 0 0:00:43 0:00:36 0:00:07 4597k
88 197M 88 174M 0 0 4748k 0 0:00:42 0:00:37 0:00:05 5511k
91 197M 91 181M 0 0 4796k 0 0:00:42 0:00:38 0:00:04 6084k
94 197M 94 186M 0 0 4800k 0 0:00:42 0:00:39 0:00:03 6155k
96 197M 96 190M 0 0 4782k 0 0:00:42 0:00:40 0:00:02 5837k
98 197M 98 193M 0 0 4758k 0 0:00:42 0:00:41 0:00:01 5362k
100 197M 100 197M 0 0 4752k 0 0:00:42 0:00:42 --:--:-- 4783k
install for i386
* installing *source* package 'erma' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'erma'
finding HTML links ... done
ErmaSet-class html
finding level-2 HTML links ... done
erma-package html
genemodel html
mapmeta html
stateProfile html
states_25 html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'erma' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'erma' as erma_1.10.0.zip
* DONE (erma)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'erma' successfully unpacked and MD5 sums checked
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erma.Rcheck/examples_i386/erma-Ex.timings
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erma.Rcheck/examples_x64/erma-Ex.timings
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